Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0001332

Physical Location & Seq

Genomic Coordinates Forward (+)

11970807 .. 11973211

Gene Structure 2405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0146200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGAGCAGCCATGGAATATTGGTTGAAAGATTCAAGGCTGCAAAGCCTTTCTTTGCTGTTGTTTTCTTGCAATTTGGGCTTGCAGGGATGGATATTCTTTGCAAGGCTGCACTTAACCAGGGGGTGAGCAACTATGTGCTCGTCGTCTACCGCCACGCAGTTGCCACTCTAGTTGTTGCTCCTTTTGCAGTGGTTCTGGACAAAAAAGTAAGGCCAAAGATGACACTTTCAATCTTCATCAAGATAATGGTGCTCGGCTTGCTAGAGCCAGTTCTTGACCAAAATATGTATTACTTGGGAATGAAGTACACAACAGCAACCTTTGCAGCAGCTATGTCCAATATTCTTCCTGCCCTTACTTTTGTAATGGCTTGGATTCTTAGGCTTGAGAAAGTAAAATTGAAATGCATCCGAAGCCAAAGTAAGGTGCTCGGAACTGCAGCAACAGTTGCAGGTGCCATGATCATGACACTGGTAAAAGGACCACTTTTGAAGTTGTTTTGGACCAGAGCAACCACTAGTAACCAACAGCAAACAAATGGGGTAGATATTCACAGTTCCATTAAGGGTGCCCTAATGATCACAGCTGGTTGCTTCTGCTGGGCTTGTTTCATGATTCTGCAGTCAGTGACACTAAGATCATACCCTGCTGAGCTCTCCCTTTCAGCTTGGATATGCCTGATGGGCACATTGGAAGGAACTGCTGTAGCATTAGTCATGGAAAGGGGAAACGCGGCCGTTTGGGCTATACATTGGGACGGAAAATTATTGGCAGCTGTCTACAGTGGAATATTCTGTTCAGGACTAGCTTATTACATTCAAGGAGTAGTAATGAAACACAGGGGCCCTGTGTTTGTGACAGCTTTTAGTCCCCTAAGCATGGTTATTGTTGCTGTCATGAGCTCCTTCATTTTGCGAGAGCAATTGTTTCTTGGAAGGTTACTTGGTGCTGCTGTCATAATCATCGGCCTGTATCTTGTTGTATGGGGTAAGAGCAAAGAGAATTCCCCAGAAGAGGAACTAGCAACAACTAAACAAGTAGGAGAGGAAAAAGATAGGTCCAATCTTGAGGTTATCACAATTGCATCATCTTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010178 GO:0010210 GO:0010211 GO:0010817 GO:0012505 GO:0016787 GO:0016810 GO:0042445 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

366

Amino Acids

39.94

Weight (kDa)

9.45

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EamA	PF00892	23 - 157	2.3e-10	EamA-like transporter family
EamA	PF00892	189 - 328	1.7e-13	EamA-like transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02875 AT3G02875 AT3G02875
fragaria_vesca	FvH4_6g19670 FvH4_6g19670 FvH4_6g19670 FvH4_6g19670 FvH4_6g19690 FvH4_6g19700 FvH4_6g19700
malus_domestica	MD14G1032600.v1.1 MD14G1032900.v1.1 MD14G1033000.v1.1 MD14G1033100.v1.1
prunus_persica	Prupe.7G099900_v2.0.a1 Prupe.7G100000_v2.0.a1 Prupe.7G100000_v2.0.a1
pyrus_communis	pycom14g02930 pycom14g02940
rosa_chinensis	RchiOBHm_Chr3g0475011 RchiOBHm_Chr3g0475021 RchiOBHm_Chr3g0475031
rosa_laevigata	RLG00000023869 RLG00000023870 RLG00000023871
rosa_multiflora	Rmu_sc0003093.1_g000010 Rmu_sc0003093.1_g000011 Rmu_sc0003093.1_g000012 Rmu_sc0003093.1_g000017
rosa_roxburghii	Rroxscaffold_6G00406610 Rroxscaffold_6G00406620 Rroxscaffold_6G00406630
rosa_rugosa	Rorug03G0146000 Rorug03G0146100 Rorug03G0146200 Rorug03G0146300 Rorug03G0146300 Rorug03G0146300
rosa_samantha	Rh3AG195700 Rh3AG195900 Rh3AG196000 Rh3BG225900 Rh3BG226100 Rh3BG226200 Rh3CG220700 Rh3CG221000 Rh3CG221200 Rh3DG221200 Rh3DG221300 Rh3DG221400
rosa_wichuraiana	Rw3G017820 Rw3G017830 Rw3G017840 Rw3G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	443
Acc36I	ACCTGC	1 cut(s)	443
AccB1I	GGYRCC	2 cut(s)	455, 569
AccI	GTMKAC	2 cut(s)	147, 780
AccII	CGCG	1 cut(s)	734
AciI	CCGC	2 cut(s)	151, 734
AcoI	YGGCCR	1 cut(s)	735
AcsI	RAATTY	1 cut(s)	1003
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	3 cut(s)	424, 880, 1015
AgsI	TTSAA	6 cut(s)	26, 34, 231, 403, 493, 821
AhlI	ACTAGT	1 cut(s)	518
AjnI	CCWGG	1 cut(s)	117
AluBI	AGCT	8 cut(s)	332, 587, 655, 668, 776, 809, 863, 903
AluI	AGCT	8 cut(s)	332, 587, 655, 668, 776, 809, 863, 903
Alw21I	GWGCWC	5 cut(s)	141, 255, 432, 657, 905
AoxI	GGCC	4 cut(s)	212, 735, 844, 967
ApaI	GGGCCC	1 cut(s)	848
ApeKI	GCWGC	8 cut(s)	6, 38, 107, 326, 329, 440, 773, 950
ApoI	RAATTY	1 cut(s)	1003
AspS9I	GGNCC	5 cut(s)	482, 504, 844, 845, 1059
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	3 cut(s)	482, 504, 1059
BaeGI	GKGCMC	3 cut(s)	574, 689, 848
BanI	GGYRCC	2 cut(s)	455, 569
BanII	GRGCYC	3 cut(s)	657, 848, 905
Bbv12I	GWGCWC	5 cut(s)	141, 255, 432, 657, 905
BbvI	GCAGC	8 cut(s)	18, 25, 94, 338, 341, 452, 785, 937
BccI	CCATC	2 cut(s)	82, 676
BceAI	ACGGC	1 cut(s)	722
BciT130I	CCWGG	1 cut(s)	119
BclI	TGATCA	2 cut(s)	462, 579
BcuI	ACTAGT	1 cut(s)	518
BfaI	CTAG	5 cut(s)	170, 263, 519, 806, 1022
BfmI	CTRYAG	4 cut(s)	438, 620, 705, 781
BfuAI	ACCTGC	1 cut(s)	443
BglI	GCCNNNNNGGC	2 cut(s)	684, 743
BisI	GCNGC	9 cut(s)	7, 39, 108, 327, 330, 441, 735, 774, 951
BlpI	GCTNAGC	1 cut(s)	651
BlsI	GCNGC	9 cut(s)	8, 40, 109, 328, 331, 442, 736, 775, 952
Bme1390I	CCNGG	1 cut(s)	119
Bme18I	GGWCC	3 cut(s)	482, 504, 1059
BmgT120I	GGNCC	5 cut(s)	482, 504, 844, 845, 1059
BmiI	GGNNCC	4 cut(s)	457, 571, 845, 846
BmrFI	CCNGG	1 cut(s)	119
BmsI	GCATC	2 cut(s)	417, 1094
Bpu10I	CCTNAGC	1 cut(s)	875
Bpu1102I	GCTNAGC	1 cut(s)	651
BpuEI	CTTGAG	2 cut(s)	407, 1088
BsaJI	CCNNGG	2 cut(s)	10, 118
Bsc4I	CCNNNNNNNGG	3 cut(s)	424, 880, 1015
Bse1I	ACTGG	2 cut(s)	269, 477
BseBI	CCWGG	1 cut(s)	119
BseDI	CCNNGG	2 cut(s)	10, 118
BseGI	GGATG	2 cut(s)	93, 408
BseLI	CCNNNNNNNGG	3 cut(s)	424, 880, 1015
BseMII	CTCAG	1 cut(s)	642
BseNI	ACTGG	2 cut(s)	269, 477
BseSI	GKGCMC	3 cut(s)	574, 689, 848
BseX3I	CGGCCG	1 cut(s)	735
BseXI	GCAGC	8 cut(s)	18, 25, 94, 338, 341, 452, 785, 937
BseYI	CCCAGC	1 cut(s)	600
BsgI	GTGCAG	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	734
Bsh1285I	CGRYCG	1 cut(s)	738
BshFI	GGCC	4 cut(s)	214, 737, 846, 969
BshNI	GGYRCC	2 cut(s)	455, 569
BsiEI	CGRYCG	1 cut(s)	738
BsiHKAI	GWGCWC	5 cut(s)	141, 255, 432, 657, 905
BslFI	GGGAC	2 cut(s)	770, 855
BslI	CCNNNNNNNGG	3 cut(s)	424, 880, 1015
BsmFI	GGGAC	2 cut(s)	770, 855
BsnI	GGCC	4 cut(s)	214, 737, 846, 969
Bsp120I	GGGCCC	1 cut(s)	844
Bsp1286I	GDGCHC	8 cut(s)	141, 255, 432, 574, 657, 689, 848, 905
Bsp143I	GATC	3 cut(s)	462, 579, 638
Bsp1720I	GCTNAGC	1 cut(s)	651
Bsp19I	CCATGG	1 cut(s)	10
BspACI	CCGC	2 cut(s)	151, 734
BspANI	GGCC	4 cut(s)	214, 737, 846, 969
BspCNI	CTCAG	1 cut(s)	643
BspFNI	CGCG	1 cut(s)	734
BspHI	TCATGA	3 cut(s)	465, 612, 897
BspLI	GGNNCC	4 cut(s)	457, 571, 845, 846
BspMAI	CTGCAG	2 cut(s)	442, 624
BspMI	ACCTGC	1 cut(s)	443
BspT107I	GGYRCC	2 cut(s)	455, 569
BsrI	ACTGG	2 cut(s)	269, 477
BssECI	CCNNGG	2 cut(s)	10, 118
BssMI	GATC	3 cut(s)	462, 579, 638
BssT1I	CCWWGG	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	119
Bst4CI	ACNGT	3 cut(s)	448, 557, 785
Bst6I	CTCTTC	1 cut(s)	1008
BstAPI	GCANNNNNTGC	2 cut(s)	323, 449
BstC8I	GCNNGC	2 cut(s)	81, 260
BstDEI	CTNAG	4 cut(s)	380, 635, 651, 875
BstDSI	CCRYGG	1 cut(s)	10
BstF5I	GGATG	2 cut(s)	93, 408
BstFNI	CGCG	1 cut(s)	734
BstKTI	GATC	3 cut(s)	465, 582, 641
BstMBI	GATC	3 cut(s)	462, 579, 638
BstMCI	CGRYCG	1 cut(s)	738
BstMWI	GCNNNNNNNGC	8 cut(s)	76, 185, 259, 323, 414, 449, 684, 743
BstNI	CCWGG	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	117
BstSFI	CTRYAG	4 cut(s)	438, 620, 705, 781
BstSLI	GKGCMC	3 cut(s)	574, 689, 848
BstUI	CGCG	1 cut(s)	734
BstV1I	GCAGC	8 cut(s)	18, 25, 94, 338, 341, 452, 785, 937
BstZI	CGGCCG	1 cut(s)	735
BsuRI	GGCC	4 cut(s)	214, 737, 846, 969
BtgI	CCRYGG	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	93, 408
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	4 cut(s)	195, 470, 633, 790
BveI	ACCTGC	1 cut(s)	443
Cac8I	GCNNGC	2 cut(s)	81, 260
CciI	TCATGA	3 cut(s)	465, 612, 897
Cfr13I	GGNCC	5 cut(s)	482, 504, 844, 845, 1059
Csp6I	GTAC	1 cut(s)	307
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviAII	CATG	7 cut(s)	11, 460, 466, 613, 718, 880, 898
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	4 cut(s)	380, 635, 651, 875
DpnI	GATC	3 cut(s)	464, 581, 640
DpnII	GATC	3 cut(s)	462, 579, 638
EaeI	YGGCCR	1 cut(s)	735
EagI	CGGCCG	1 cut(s)	735
Eam1104I	CTCTTC	1 cut(s)	1008
EarI	CTCTTC	1 cut(s)	1008
Ecl136II	GAGCTC	2 cut(s)	655, 903
EclXI	CGGCCG	1 cut(s)	735
Eco130I	CCWWGG	1 cut(s)	10
Eco24I	GRGCYC	3 cut(s)	657, 848, 905
Eco47I	GGWCC	3 cut(s)	482, 504, 1059
Eco52I	CGGCCG	1 cut(s)	735
Eco53kI	GAGCTC	2 cut(s)	655, 903
EcoICRI	GAGCTC	2 cut(s)	655, 903
EcoO109I	RGGNCCY	2 cut(s)	844, 845
EcoRI	GAATTC	1 cut(s)	1003
EcoRII	CCWGG	1 cut(s)	117
EcoT14I	CCWWGG	1 cut(s)	10
EcoT22I	ATGCAT	1 cut(s)	410
EcoT38I	GRGCYC	3 cut(s)	657, 848, 905
ErhI	CCWWGG	1 cut(s)	10
FaeI	CATG	7 cut(s)	14, 463, 469, 616, 721, 883, 901
FalI	AAGNNNNNCTT	4 cut(s)	35, 67, 471, 503
FaqI	GGGAC	2 cut(s)	770, 855
FatI	CATG	7 cut(s)	10, 459, 465, 612, 717, 879, 897
FbaI	TGATCA	2 cut(s)	462, 579
FblI	GTMKAC	2 cut(s)	147, 780
Fnu4HI	GCNGC	9 cut(s)	7, 39, 108, 327, 330, 441, 735, 774, 951
FokI	GGATG	2 cut(s)	100, 395
FriOI	GRGCYC	3 cut(s)	657, 848, 905
Fsp4HI	GCNGC	9 cut(s)	7, 39, 108, 327, 330, 441, 735, 774, 951
FspBI	CTAG	5 cut(s)	170, 263, 519, 806, 1022
GluI	GCNGC	9 cut(s)	7, 39, 108, 327, 330, 441, 735, 774, 951
GsaI	CCCAGC	1 cut(s)	604
HaeIII	GGCC	4 cut(s)	214, 737, 846, 969
Hin1II	CATG	7 cut(s)	14, 463, 469, 616, 721, 883, 901
HinfI	GANTC	3 cut(s)	30, 376, 616
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	3 cut(s)	148, 309, 781
Hpy188I	TCNGA	2 cut(s)	413, 434
Hpy188III	TCNNGA	8 cut(s)	197, 241, 275, 466, 613, 801, 898, 1067
Hpy8I	GTNNAC	3 cut(s)	148, 309, 781
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	3 cut(s)	689, 916, 930
HpyCH4III	ACNGT	3 cut(s)	448, 557, 785
HpyF10VI	GCNNNNNNNGC	8 cut(s)	76, 185, 259, 323, 414, 449, 684, 743
HpyF3I	CTNAG	4 cut(s)	380, 635, 651, 875
Hsp92II	CATG	7 cut(s)	14, 463, 469, 616, 721, 883, 901
Ksp22I	TGATCA	2 cut(s)	462, 579
Kzo9I	GATC	3 cut(s)	462, 579, 638
LmnI	GCTCC	2 cut(s)	184, 908
Lsp1109I	GCAGC	8 cut(s)	18, 25, 94, 338, 341, 452, 785, 937
LweI	GCATC	2 cut(s)	417, 1094
MaeI	CTAG	5 cut(s)	170, 263, 519, 806, 1022
MaeIII	GTNAC	4 cut(s)	521, 628, 856, 939
MalI	GATC	3 cut(s)	464, 581, 640
MboI	GATC	3 cut(s)	462, 579, 638
MboII	GAAGA	3 cut(s)	226, 338, 1025
MfeI	CAATTG	2 cut(s)	923, 1080
MhlI	GDGCHC	8 cut(s)	141, 255, 432, 574, 657, 689, 848, 905
MluCI	AATT	6 cut(s)	71, 398, 764, 923, 1003, 1080
MnlI	CCTC	3 cut(s)	1009, 1039, 1063
Mph1103I	ATGCAT	1 cut(s)	410
MseI	TTAA	2 cut(s)	114, 564
MslI	CAYNNNNRTG	1 cut(s)	464
MspA1I	CMGCKG	2 cut(s)	587, 776
MspR9I	CCNGG	1 cut(s)	119
MunI	CAATTG	2 cut(s)	923, 1080
MvaI	CCWGG	1 cut(s)	119
MvnI	CGCG	1 cut(s)	734
MwoI	GCNNNNNNNGC	8 cut(s)	76, 185, 259, 323, 414, 449, 684, 743
NcoI	CCATGG	1 cut(s)	10
NdeII	GATC	3 cut(s)	462, 579, 638
NlaIII	CATG	7 cut(s)	14, 463, 469, 616, 721, 883, 901
NlaIV	GGNNCC	4 cut(s)	457, 571, 845, 846
NmeAIII	GCCGAG	1 cut(s)	234
NmuCI	GTSAC	2 cut(s)	628, 856
NsiI	ATGCAT	1 cut(s)	410
PagI	TCATGA	3 cut(s)	465, 612, 897
PaqCI	CACCTGC	1 cut(s)	443
PfeI	GAWTC	3 cut(s)	30, 376, 616
PkrI	GCNGC	9 cut(s)	8, 40, 109, 328, 331, 442, 736, 775, 952
Psp124BI	GAGCTC	2 cut(s)	657, 905
Psp6I	CCWGG	1 cut(s)	117
PspFI	CCCAGC	1 cut(s)	600
PspGI	CCWGG	1 cut(s)	117
PspN4I	GGNNCC	4 cut(s)	457, 571, 845, 846
PspOMI	GGGCCC	1 cut(s)	844
PspPI	GGNCC	5 cut(s)	482, 504, 844, 845, 1059
PstI	CTGCAG	2 cut(s)	442, 624
PvuII	CAGCTG	2 cut(s)	587, 776
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	464
SacI	GAGCTC	2 cut(s)	657, 905
SaqAI	TTAA	2 cut(s)	114, 564
SatI	GCNGC	9 cut(s)	7, 39, 108, 327, 330, 441, 735, 774, 951
Sau3AI	GATC	3 cut(s)	462, 579, 638
Sau96I	GGNCC	5 cut(s)	482, 504, 844, 845, 1059
ScrFI	CCNGG	1 cut(s)	119
SduI	GDGCHC	8 cut(s)	141, 255, 432, 574, 657, 689, 848, 905
SfaNI	GCATC	2 cut(s)	417, 1094
SfcI	CTRYAG	4 cut(s)	438, 620, 705, 781
SinI	GGWCC	3 cut(s)	482, 504, 1059
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	2 cut(s)	386, 1067
SmoI	CTYRAG	2 cut(s)	386, 1067
SpeI	ACTAGT	1 cut(s)	518
Sse9I	AATT	6 cut(s)	71, 398, 764, 923, 1003, 1080
SsiI	CCGC	2 cut(s)	151, 734
SspI	AATATT	3 cut(s)	18, 343, 792
SspMI	CTAG	5 cut(s)	170, 263, 519, 806, 1022
SstI	GAGCTC	2 cut(s)	657, 905
StyD4I	CCNGG	1 cut(s)	117
StyI	CCWWGG	1 cut(s)	10
TaaI	ACNGT	3 cut(s)	448, 557, 785
TasI	AATT	6 cut(s)	71, 398, 764, 923, 1003, 1080
TatI	WGTACW	1 cut(s)	306
TauI	GCSGC	1 cut(s)	737
TfiI	GAWTC	3 cut(s)	30, 376, 616
Tru1I	TTAA	2 cut(s)	114, 564
Tru9I	TTAA	2 cut(s)	114, 564
TscAI	CASTG	4 cut(s)	195, 477, 633, 790
TseFI	GTSAC	2 cut(s)	628, 856
TseI	GCWGC	8 cut(s)	6, 38, 107, 326, 329, 440, 773, 950
Tsp45I	GTSAC	2 cut(s)	628, 856
TspDTI	ATGAA	5 cut(s)	226, 317, 601, 848, 898
TspGWI	ACGGA	1 cut(s)	774
TspRI	CASTG	4 cut(s)	195, 477, 633, 790
VpaK11BI	GGWCC	3 cut(s)	482, 504, 1059
XapI	RAATTY	1 cut(s)	1003
XmiI	GTMKAC	2 cut(s)	147, 780
XspI	CTAG	5 cut(s)	170, 263, 519, 806, 1022
Zsp2I	ATGCAT	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.