Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0001332

Physical Location & Seq

Genomic Coordinates Reverse (-)

20665873 .. 20666349

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG226100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGAGTTTCATAATCACCTTCATCTTGTTGCTATCAACCACACTATTTCATCAATCTTGGGCTTTGGAGGAGGTAGCTTATGGATCAGAGGCTTCAGAGCTTGAGGTTTTGACTAGGGAGCTATTGGAATTGGCGAGAGAGCCTGAGTTCTTTGAATGGATGAGAGGGCTCAGGAGGAGGATTCATGAGTATCCAGAGCTGGGATTTGAAGAGCACAAAACTAGTGAACTCATCAGGGCTGAGCTTGACTTACTCGGGATTGAGTACAAATGGCCTGTGGCCAAGACTGGTGTGGTGGCCTTTATTGGGTCTGGCTCTAAACCAGTCTTTGGACTTAGAGCTGACATGGATGCTCTCCCTCTCCAGGTTCTCTCTCACACACTTTTTTACTGTGTCATTCCAAACAATGCTCATGGTGCCTCTGTTTTCATCTTTCTCAAATGTATGACGGTAATATTAGGGTTAAATGTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010178 GO:0010210 GO:0010211 GO:0010817 GO:0012505 GO:0016787 GO:0016810 GO:0042445 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

158

Amino Acids

17.95

Weight (kDa)

5.21

Isoelectric Point (pI)

46.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02875 AT3G02875 AT3G02875
fragaria_vesca	FvH4_6g19670 FvH4_6g19670 FvH4_6g19670 FvH4_6g19670 FvH4_6g19690 FvH4_6g19700 FvH4_6g19700
malus_domestica	MD14G1032600.v1.1 MD14G1032900.v1.1 MD14G1033000.v1.1 MD14G1033100.v1.1
prunus_persica	Prupe.7G099900_v2.0.a1 Prupe.7G100000_v2.0.a1 Prupe.7G100000_v2.0.a1
pyrus_communis	pycom14g02930 pycom14g02940
rosa_chinensis	RchiOBHm_Chr3g0475011 RchiOBHm_Chr3g0475021 RchiOBHm_Chr3g0475031
rosa_laevigata	RLG00000023869 RLG00000023870 RLG00000023871
rosa_multiflora	Rmu_sc0003093.1_g000010 Rmu_sc0003093.1_g000011 Rmu_sc0003093.1_g000012 Rmu_sc0003093.1_g000017
rosa_roxburghii	Rroxscaffold_6G00406610 Rroxscaffold_6G00406620 Rroxscaffold_6G00406630
rosa_rugosa	Rorug03G0146000 Rorug03G0146100 Rorug03G0146200 Rorug03G0146300 Rorug03G0146300 Rorug03G0146300
rosa_samantha	Rh3AG195700 Rh3AG195900 Rh3AG196000 Rh3BG225900 Rh3BG226100 Rh3BG226200 Rh3CG220700 Rh3CG221000 Rh3CG221200 Rh3DG221200 Rh3DG221300 Rh3DG221400
rosa_wichuraiana	Rw3G017820 Rw3G017830 Rw3G017840 Rw3G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	416
AccB7I	CCANNNNNTGG	1 cut(s)	329
AclWI	GGATC	1 cut(s)	91
AcoI	YGGCCR	1 cut(s)	279
AcuI	CTGAAG	1 cut(s)	78
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	4 cut(s)	200, 306, 329, 364
AgsI	TTSAA	2 cut(s)	155, 209
AhlI	ACTAGT	1 cut(s)	221
AjnI	CCWGG	1 cut(s)	363
AluBI	AGCT	6 cut(s)	77, 100, 121, 199, 244, 341
AluI	AGCT	6 cut(s)	77, 100, 121, 199, 244, 341
Alw21I	GWGCWC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	91
Ama87I	CYCGRG	1 cut(s)	254
AoxI	GGCC	3 cut(s)	272, 279, 297
AsuHPI	GGTGA	1 cut(s)	7
AvaI	CYCGRG	1 cut(s)	254
BalI	TGGCCA	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	365
BciVI	GTATCC	1 cut(s)	201
BcuI	ACTAGT	1 cut(s)	221
BfaI	CTAG	2 cut(s)	114, 222
BfuI	GTATCC	1 cut(s)	201
BlpI	GCTNAGC	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	365
BmeT110I	CYCGRG	1 cut(s)	254
BmiI	GGNNCC	1 cut(s)	418
BmrFI	CCNGG	1 cut(s)	365
BmsI	GCATC	1 cut(s)	340
BpmI	CTGGAG	1 cut(s)	347
Bpu10I	CCTNAGC	1 cut(s)	170
Bpu1102I	GCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	122
Bsc4I	CCNNNNNNNGG	4 cut(s)	200, 306, 329, 364
Bse1I	ACTGG	2 cut(s)	292, 323
BseBI	CCWGG	1 cut(s)	365
BseGI	GGATG	2 cut(s)	165, 355
BseLI	CCNNNNNNNGG	4 cut(s)	200, 306, 329, 364
BseMII	CTCAG	3 cut(s)	135, 184, 231
BseNI	ACTGG	2 cut(s)	292, 323
BseRI	GAGGAG	2 cut(s)	83, 190
BseYI	CCCAGC	1 cut(s)	199
BshFI	GGCC	3 cut(s)	274, 281, 299
BshNI	GGYRCC	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	216
BsiHKCI	CYCGRG	1 cut(s)	254
BslI	CCNNNNNNNGG	4 cut(s)	200, 306, 329, 364
BsnI	GGCC	3 cut(s)	274, 281, 299
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	2 cut(s)	171, 216
Bsp143I	GATC	1 cut(s)	83
Bsp1720I	GCTNAGC	1 cut(s)	240
BspANI	GGCC	3 cut(s)	274, 281, 299
BspCNI	CTCAG	3 cut(s)	136, 183, 232
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	418
BspPI	GGATC	1 cut(s)	91
BspQI	GCTCTTC	1 cut(s)	204
BspT107I	GGYRCC	1 cut(s)	416
BsrI	ACTGG	2 cut(s)	292, 323
BssMI	GATC	1 cut(s)	83
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	2 cut(s)	392, 451
Bst6I	CTCTTC	1 cut(s)	204
BstDEI	CTNAG	4 cut(s)	144, 170, 240, 335
BstF5I	GGATG	2 cut(s)	165, 355
BstKTI	GATC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	83
BstMWI	GCNNNNNNNGC	1 cut(s)	416
BstNI	CCWGG	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	363
BsuI	GTATCC	1 cut(s)	201
BsuRI	GGCC	3 cut(s)	274, 281, 299
BtsCI	GGATG	2 cut(s)	165, 355
CciI	TCATGA	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	3 cut(s)	185, 346, 413
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	4 cut(s)	144, 170, 240, 335
DpnI	GATC	1 cut(s)	85
DpnII	GATC	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Eco24I	GRGCYC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	171
FaeI	CATG	3 cut(s)	188, 349, 416
FaiI	YATR	6 cut(s)	11, 81, 186, 347, 414, 446
FatI	CATG	3 cut(s)	184, 345, 412
FokI	GGATG	2 cut(s)	172, 362
FriOI	GRGCYC	1 cut(s)	171
FspBI	CTAG	2 cut(s)	114, 222
GsaI	CCCAGC	1 cut(s)	203
GsuI	CTGGAG	1 cut(s)	347
HaeIII	GGCC	3 cut(s)	274, 281, 299
Hin1II	CATG	3 cut(s)	188, 349, 416
HinfI	GANTC	1 cut(s)	181
HphI	GGTGA	1 cut(s)	7
Hpy166II	GTNNAC	1 cut(s)	227
Hpy188I	TCNGA	2 cut(s)	88, 97
Hpy188III	TCNNGA	4 cut(s)	172, 185, 194, 256
Hpy8I	GTNNAC	1 cut(s)	227
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	2 cut(s)	392, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	416
HpyF3I	CTNAG	4 cut(s)	144, 170, 240, 335
Hsp92II	CATG	3 cut(s)	188, 349, 416
Kzo9I	GATC	1 cut(s)	83
LguI	GCTCTTC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	118
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	2 cut(s)	114, 222
MalI	GATC	1 cut(s)	85
MboI	GATC	1 cut(s)	83
MboII	GAAGA	1 cut(s)	221
MhlI	GDGCHC	2 cut(s)	171, 216
MlsI	TGGCCA	1 cut(s)	281
MluCI	AATT	1 cut(s)	128
MluNI	TGGCCA	1 cut(s)	281
MnlI	CCTC	9 cut(s)	61, 64, 82, 97, 158, 168, 171, 369, 430
Mox20I	TGGCCA	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	1 cut(s)	464
Msp20I	TGGCCA	1 cut(s)	281
MspR9I	CCNGG	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	416
NdeII	GATC	1 cut(s)	83
NlaIII	CATG	3 cut(s)	188, 349, 416
NlaIV	GGNNCC	1 cut(s)	418
PagI	TCATGA	1 cut(s)	184
PciSI	GCTCTTC	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	181
PflMI	CCANNNNNTGG	1 cut(s)	329
Psp6I	CCWGG	1 cut(s)	363
PspFI	CCCAGC	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	418
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	464
Sau3AI	GATC	1 cut(s)	83
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	2 cut(s)	171, 216
SfaNI	GCATC	1 cut(s)	340
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
SpeI	ACTAGT	1 cut(s)	221
Sse9I	AATT	1 cut(s)	128
SspI	AATATT	1 cut(s)	456
SspMI	CTAG	2 cut(s)	114, 222
StyD4I	CCNGG	1 cut(s)	363
TaaI	ACNGT	2 cut(s)	392, 451
TasI	AATT	1 cut(s)	128
TatI	WGTACW	1 cut(s)	264
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	464
Tru9I	TTAA	1 cut(s)	464
TspDTI	ATGAA	4 cut(s)	10, 38, 173, 418
Van91I	CCANNNNNTGG	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XspI	CTAG	2 cut(s)	114, 222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.