Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001332

Physical Location & Seq

Genomic Coordinates Reverse (-)

13168575 .. 13169018

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g19690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGACCTGCAACCTCACATTGTGCTTGTTACTATCAGCCACACTACTTAATCAACCTTGTGCTTTGGAGGAGGTAGCTTATGAATCAGAGGCTTCAGAGCTAGAGGTTTTGACTCGGGAGCTGTTGAAATCAGCGAGAGAGCCTGAGTTCTTTGAATGGATGATAGGGCTGAGGAGGAGGATTCATGAGTACCCAGAGCTGGGATTTGAAGAGCACAAGACCAGTGAGCTCATCAGGGCTGAGCTTGACTTTCTAGGGATTGATTACAAATGGCCTGTGGCCAAGACCGGAGTGGTGGCCTTTATTGGGTCTGGCTCTAAACCAGTGTTTGGACTAAGAGCTGACATGGATGCTCTCCCTGTCCAGGTTCTCTCTCACACATATTACTGTGTTTCCAAAACAATGCTCATGGTGCCTCTGTTTTCATTTTTGCCAAAGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010178 GO:0010210 GO:0010211 GO:0010817 GO:0012505 GO:0016787 GO:0016810 GO:0042445 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

148

Amino Acids

16.74

Weight (kDa)

5.09

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02875 AT3G02875 AT3G02875
fragaria_vesca	FvH4_6g19670 FvH4_6g19670 FvH4_6g19670 FvH4_6g19670 FvH4_6g19690 FvH4_6g19700 FvH4_6g19700
malus_domestica	MD14G1032600.v1.1 MD14G1032900.v1.1 MD14G1033000.v1.1 MD14G1033100.v1.1
prunus_persica	Prupe.7G099900_v2.0.a1 Prupe.7G100000_v2.0.a1 Prupe.7G100000_v2.0.a1
pyrus_communis	pycom14g02930 pycom14g02940
rosa_chinensis	RchiOBHm_Chr3g0475011 RchiOBHm_Chr3g0475021 RchiOBHm_Chr3g0475031
rosa_laevigata	RLG00000023869 RLG00000023870 RLG00000023871
rosa_multiflora	Rmu_sc0003093.1_g000010 Rmu_sc0003093.1_g000011 Rmu_sc0003093.1_g000012 Rmu_sc0003093.1_g000017
rosa_roxburghii	Rroxscaffold_6G00406610 Rroxscaffold_6G00406620 Rroxscaffold_6G00406630
rosa_rugosa	Rorug03G0146000 Rorug03G0146100 Rorug03G0146200 Rorug03G0146300 Rorug03G0146300 Rorug03G0146300
rosa_samantha	Rh3AG195700 Rh3AG195900 Rh3AG196000 Rh3BG225900 Rh3BG226100 Rh3BG226200 Rh3CG220700 Rh3CG221000 Rh3CG221200 Rh3DG221200 Rh3DG221300 Rh3DG221400
rosa_wichuraiana	Rw3G017820 Rw3G017830 Rw3G017840 Rw3G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	14
AccB1I	GGYRCC	1 cut(s)	412
AccB7I	CCANNNNNTGG	1 cut(s)	329
AcoI	YGGCCR	1 cut(s)	279
AcuI	CTGAAG	1 cut(s)	78
AdeI	CACNNNGTG	1 cut(s)	21
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	5 cut(s)	199, 200, 306, 329, 364
AgsI	TTSAA	3 cut(s)	127, 155, 209
AjnI	CCWGG	1 cut(s)	363
AluBI	AGCT	7 cut(s)	77, 100, 121, 199, 229, 244, 341
AluI	AGCT	7 cut(s)	77, 100, 121, 199, 229, 244, 341
Alw21I	GWGCWC	2 cut(s)	216, 231
Ama87I	CYCGRG	1 cut(s)	114
AoxI	GGCC	3 cut(s)	272, 279, 297
AvaI	CYCGRG	1 cut(s)	114
BalI	TGGCCA	1 cut(s)	281
BanI	GGYRCC	1 cut(s)	412
BanII	GRGCYC	1 cut(s)	231
Bbv12I	GWGCWC	2 cut(s)	216, 231
BbvCI	CCTCAGC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	365
BfaI	CTAG	2 cut(s)	101, 254
BfuAI	ACCTGC	1 cut(s)	14
BlpI	GCTNAGC	1 cut(s)	240
Bme1390I	CCNGG	1 cut(s)	365
BmeT110I	CYCGRG	1 cut(s)	114
BmiI	GGNNCC	1 cut(s)	414
BmrFI	CCNGG	1 cut(s)	365
BmsI	GCATC	1 cut(s)	340
Bpu10I	CCTNAGC	1 cut(s)	170
Bpu1102I	GCTNAGC	1 cut(s)	240
BsaWI	WCCGGW	1 cut(s)	287
Bsc4I	CCNNNNNNNGG	5 cut(s)	199, 200, 306, 329, 364
Bse1I	ACTGG	2 cut(s)	222, 323
BseBI	CCWGG	1 cut(s)	365
BseGI	GGATG	2 cut(s)	165, 355
BseLI	CCNNNNNNNGG	5 cut(s)	199, 200, 306, 329, 364
BseMII	CTCAG	3 cut(s)	135, 161, 231
BseNI	ACTGG	2 cut(s)	222, 323
BseRI	GAGGAG	3 cut(s)	83, 187, 190
BseYI	CCCAGC	1 cut(s)	199
BshFI	GGCC	3 cut(s)	274, 281, 299
BshNI	GGYRCC	1 cut(s)	412
BsiHKAI	GWGCWC	2 cut(s)	216, 231
BsiHKCI	CYCGRG	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	288
BslI	CCNNNNNNNGG	5 cut(s)	199, 200, 306, 329, 364
BsnI	GGCC	3 cut(s)	274, 281, 299
BsoBI	CYCGRG	1 cut(s)	114
Bsp1286I	GDGCHC	2 cut(s)	216, 231
Bsp1720I	GCTNAGC	1 cut(s)	240
BspANI	GGCC	3 cut(s)	274, 281, 299
BspCNI	CTCAG	3 cut(s)	136, 162, 232
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	1 cut(s)	414
BspMI	ACCTGC	1 cut(s)	14
BspQI	GCTCTTC	1 cut(s)	204
BspT107I	GGYRCC	1 cut(s)	412
BsrI	ACTGG	2 cut(s)	222, 323
Bst2UI	CCWGG	1 cut(s)	365
Bst4CI	ACNGT	1 cut(s)	389
Bst6I	CTCTTC	1 cut(s)	204
BstDEI	CTNAG	4 cut(s)	144, 170, 240, 335
BstF5I	GGATG	2 cut(s)	165, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	412
BstNI	CCWGG	1 cut(s)	365
BstSCI	CCNGG	1 cut(s)	363
BsuRI	GGCC	3 cut(s)	274, 281, 299
BtsCI	GGATG	2 cut(s)	165, 355
BtsIMutI	CAGTG	2 cut(s)	229, 330
BveI	ACCTGC	1 cut(s)	14
CciI	TCATGA	1 cut(s)	184
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	3 cut(s)	185, 346, 409
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	4 cut(s)	144, 170, 240, 335
DraIII	CACNNNGTG	1 cut(s)	21
EaeI	YGGCCR	1 cut(s)	279
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
Ecl136II	GAGCTC	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	231
Eco53kI	GAGCTC	1 cut(s)	229
Eco57I	CTGAAG	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	114
EcoICRI	GAGCTC	1 cut(s)	229
EcoRII	CCWGG	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	231
FaeI	CATG	3 cut(s)	188, 349, 412
FaiI	YATR	5 cut(s)	81, 186, 347, 382, 410
FatI	CATG	3 cut(s)	184, 345, 408
FokI	GGATG	2 cut(s)	172, 362
FriOI	GRGCYC	1 cut(s)	231
FspBI	CTAG	2 cut(s)	101, 254
GsaI	CCCAGC	1 cut(s)	203
HaeIII	GGCC	3 cut(s)	274, 281, 299
HapII	CCGG	1 cut(s)	288
Hin1II	CATG	3 cut(s)	188, 349, 412
HinfI	GANTC	3 cut(s)	83, 112, 181
HpaII	CCGG	1 cut(s)	288
Hpy188I	TCNGA	2 cut(s)	88, 97
Hpy188III	TCNNGA	2 cut(s)	116, 185
HpyCH4III	ACNGT	1 cut(s)	389
HpyCH4V	TGCA	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	1 cut(s)	412
HpyF3I	CTNAG	4 cut(s)	144, 170, 240, 335
Hsp92II	CATG	3 cut(s)	188, 349, 412
LguI	GCTCTTC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	118
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	2 cut(s)	101, 254
MaeIII	GTNAC	1 cut(s)	27
MboII	GAAGA	1 cut(s)	221
MhlI	GDGCHC	2 cut(s)	216, 231
MlsI	TGGCCA	1 cut(s)	281
MluNI	TGGCCA	1 cut(s)	281
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	9 cut(s)	23, 61, 64, 82, 97, 165, 168, 171, 426
Mox20I	TGGCCA	1 cut(s)	281
MscI	TGGCCA	1 cut(s)	281
MseI	TTAA	1 cut(s)	48
Msp20I	TGGCCA	1 cut(s)	281
MspI	CCGG	1 cut(s)	288
MspR9I	CCNGG	1 cut(s)	365
MvaI	CCWGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	412
NlaIII	CATG	3 cut(s)	188, 349, 412
NlaIV	GGNNCC	1 cut(s)	414
PagI	TCATGA	1 cut(s)	184
PciSI	GCTCTTC	1 cut(s)	204
PfeI	GAWTC	2 cut(s)	83, 181
PflMI	CCANNNNNTGG	1 cut(s)	329
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Psp124BI	GAGCTC	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	363
PspFI	CCCAGC	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	414
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SacI	GAGCTC	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	204
SaqAI	TTAA	1 cut(s)	48
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	2 cut(s)	216, 231
SfaNI	GCATC	1 cut(s)	340
SspMI	CTAG	2 cut(s)	101, 254
SstI	GAGCTC	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	389
TfiI	GAWTC	2 cut(s)	83, 181
Tru1I	TTAA	1 cut(s)	48
Tru9I	TTAA	1 cut(s)	48
TscAI	CASTG	2 cut(s)	229, 330
TspDTI	ATGAA	3 cut(s)	96, 173, 414
TspRI	CASTG	2 cut(s)	229, 330
Van91I	CCANNNNNTGG	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XspI	CTAG	2 cut(s)	101, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.