Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0001332

Physical Location & Seq

Genomic Coordinates Reverse (-)

20611677 .. 20612292

Gene Structure 616 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG221200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGATGGGGTTCATGCTCTTCTGCTTATTGCTGTTGTCCATCTTAAGCCAATCATGGGCTTTGGAAGCAACTGCGACTGAGTCGGATCAGCTGGGGTTATTGACTCGGGAGTTGCTGGAGTCGGCCAAGGAACCCGAGTTCTTTGAATGGATGATAGGAGTGAGGAGAAGAATCCACCAGTACCCAGAGACTGGTTTCGAGGAGTACAGGACGAGTCAACTCATAAGGTCCGAGCTTGACTCGCTTGGGATCAAGTACACCTGGCCTGTTGCCAAGACTGGTATTGTTGCTTCTATCGGGTCCGGGTCCAAACCCGTCTTCGCTCTCAGAGCTGACATGGACGCCCTTCCTATTCAGGAACAAGTAGAGTGGGAATTCAAGAGCAAAATAGATGGCAAAATGCACGCTTGTGGTCACGATGCTCATGTAGCAATGTTGCTTGGTGCAGCCAGGATACTCCAGAGTAGAAGAGACGTGCTAAAGGTATGCAGAAGTCGTCAAAATGTTCTATATATTGCCACACCTACAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010178 GO:0010210 GO:0010211 GO:0010817 GO:0012505 GO:0016787 GO:0016810 GO:0042445 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

177

Amino Acids

20.03

Weight (kDa)

6.91

Isoelectric Point (pI)

53.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M20	PF01546	108 - 160	1.4e-15	Peptidase family M20/M25/M40

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02875 AT3G02875 AT3G02875
fragaria_vesca	FvH4_6g19670 FvH4_6g19670 FvH4_6g19670 FvH4_6g19670 FvH4_6g19690 FvH4_6g19700 FvH4_6g19700
malus_domestica	MD14G1032600.v1.1 MD14G1032900.v1.1 MD14G1033000.v1.1 MD14G1033100.v1.1
prunus_persica	Prupe.7G099900_v2.0.a1 Prupe.7G100000_v2.0.a1 Prupe.7G100000_v2.0.a1
pyrus_communis	pycom14g02930 pycom14g02940
rosa_chinensis	RchiOBHm_Chr3g0475011 RchiOBHm_Chr3g0475021 RchiOBHm_Chr3g0475031
rosa_laevigata	RLG00000023869 RLG00000023870 RLG00000023871
rosa_multiflora	Rmu_sc0003093.1_g000010 Rmu_sc0003093.1_g000011 Rmu_sc0003093.1_g000012 Rmu_sc0003093.1_g000017
rosa_roxburghii	Rroxscaffold_6G00406610 Rroxscaffold_6G00406620 Rroxscaffold_6G00406630
rosa_rugosa	Rorug03G0146000 Rorug03G0146100 Rorug03G0146200 Rorug03G0146300 Rorug03G0146300 Rorug03G0146300
rosa_samantha	Rh3AG195700 Rh3AG195900 Rh3AG196000 Rh3BG225900 Rh3BG226100 Rh3BG226200 Rh3CG220700 Rh3CG221000 Rh3CG221200 Rh3DG221200 Rh3DG221300 Rh3DG221400
rosa_wichuraiana	Rw3G017820 Rw3G017830 Rw3G017840 Rw3G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	191
AclWI	GGATC	2 cut(s)	93, 257
AcoI	YGGCCR	1 cut(s)	123
AcsI	RAATTY	1 cut(s)	374
AcyI	GRCGYC	1 cut(s)	342
AfaI	GTAC	3 cut(s)	182, 206, 257
AfiI	CCNNNNNNNGG	2 cut(s)	55, 191
AflII	CTTAAG	1 cut(s)	43
AgsI	TTSAA	2 cut(s)	146, 379
AjiI	CACGTC	1 cut(s)	475
AjnI	CCWGG	2 cut(s)	260, 449
AjuI	GAANNNNNNNTTGG	2 cut(s)	302, 334
AleI	CACNNNNGTG	1 cut(s)	408
AloI	GAACNNNNNNTCC	2 cut(s)	122, 154
AluBI	AGCT	3 cut(s)	91, 235, 332
AluI	AGCT	3 cut(s)	91, 235, 332
Alw26I	GTCTC	2 cut(s)	182, 465
AlwI	GGATC	2 cut(s)	93, 257
AlwNI	CAGNNNCTG	1 cut(s)	191
Ama87I	CYCGRG	2 cut(s)	105, 134
AoxI	GGCC	2 cut(s)	123, 263
ApeKI	GCWGC	1 cut(s)	446
ApoI	RAATTY	1 cut(s)	374
AspS9I	GGNCC	3 cut(s)	228, 300, 306
AsuC2I	CCSGG	1 cut(s)	304
AvaI	CYCGRG	2 cut(s)	105, 134
AvaII	GGWCC	3 cut(s)	228, 300, 306
BarI	GAAGNNNNNNTAC	2 cut(s)	274, 306
BbsI	GAAGAC	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	458
BccI	CCATC	2 cut(s)	47, 386
BciT130I	CCWGG	2 cut(s)	262, 451
BciVI	GTATCC	1 cut(s)	447
BcnI	CCSGG	1 cut(s)	304
BcoDI	GTCTC	2 cut(s)	182, 465
BfrI	CTTAAG	1 cut(s)	43
BfuI	GTATCC	1 cut(s)	447
BisI	GCNGC	1 cut(s)	447
BlsI	GCNGC	1 cut(s)	448
Bme1390I	CCNGG	3 cut(s)	262, 304, 451
Bme18I	GGWCC	3 cut(s)	228, 300, 306
BmeT110I	CYCGRG	2 cut(s)	105, 134
BmgBI	CACGTC	1 cut(s)	475
BmgT120I	GGNCC	3 cut(s)	228, 300, 306
BmiI	GGNNCC	3 cut(s)	132, 301, 307
BmrFI	CCNGG	3 cut(s)	262, 304, 451
BmsI	GCATC	1 cut(s)	409
BpiI	GAAGAC	1 cut(s)	310
BplI	GAGNNNNNCTC	2 cut(s)	224, 256
BpmI	CTGGAG	2 cut(s)	137, 443
BpuMI	CCSGG	1 cut(s)	304
BsaHI	GRCGYC	1 cut(s)	342
BsaJI	CCNNGG	1 cut(s)	126
Bsc4I	CCNNNNNNNGG	2 cut(s)	55, 191
Bse1I	ACTGG	3 cut(s)	178, 196, 283
Bse3DI	GCAATG	1 cut(s)	438
BseBI	CCWGG	2 cut(s)	262, 451
BseDI	CCNNGG	1 cut(s)	126
BseGI	GGATG	1 cut(s)	156
BseLI	CCNNNNNNNGG	2 cut(s)	55, 191
BseMI	GCAATG	1 cut(s)	438
BseMII	CTCAG	2 cut(s)	69, 340
BseNI	ACTGG	3 cut(s)	178, 196, 283
BseRI	GAGGAG	2 cut(s)	178, 215
BseXI	GCAGC	1 cut(s)	458
BseYI	CCCAGC	1 cut(s)	91
BsgI	GTGCAG	1 cut(s)	465
BshFI	GGCC	2 cut(s)	125, 265
BsiHKCI	CYCGRG	2 cut(s)	105, 134
BsiSI	CCGG	1 cut(s)	303
BslI	CCNNNNNNNGG	2 cut(s)	55, 191
BsmAI	GTCTC	2 cut(s)	182, 465
BsmBI	CGTCTC	1 cut(s)	465
BsnI	GGCC	2 cut(s)	125, 265
BsoBI	CYCGRG	2 cut(s)	105, 134
Bsp143I	GATC	2 cut(s)	85, 249
BspANI	GGCC	2 cut(s)	125, 265
BspCNI	CTCAG	2 cut(s)	70, 339
BspLI	GGNNCC	3 cut(s)	132, 301, 307
BspPI	GGATC	2 cut(s)	93, 257
BspQI	GCTCTTC	1 cut(s)	23
BspTI	CTTAAG	1 cut(s)	43
BsrDI	GCAATG	1 cut(s)	438
BsrI	ACTGG	3 cut(s)	178, 196, 283
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	2 cut(s)	85, 249
BssNI	GRCGYC	1 cut(s)	342
BssT1I	CCWWGG	1 cut(s)	126
Bst2UI	CCWGG	2 cut(s)	262, 451
Bst6I	CTCTTC	2 cut(s)	23, 463
BstACI	GRCGYC	1 cut(s)	342
BstAFI	CTTAAG	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	2 cut(s)	78, 326
BstF5I	GGATG	1 cut(s)	156
BstKTI	GATC	2 cut(s)	88, 252
BstMAI	GTCTC	2 cut(s)	182, 465
BstMBI	GATC	2 cut(s)	85, 249
BstMWI	GCNNNNNNNGC	4 cut(s)	65, 241, 329, 428
BstNI	CCWGG	2 cut(s)	262, 451
BstSCI	CCNGG	3 cut(s)	260, 302, 449
BstV1I	GCAGC	1 cut(s)	458
BstV2I	GAAGAC	1 cut(s)	310
BsuI	GTATCC	1 cut(s)	447
BsuRI	GGCC	2 cut(s)	125, 265
BtrI	CACGTC	1 cut(s)	475
BtsCI	GGATG	1 cut(s)	156
Cac8I	GCNNGC	1 cut(s)	405
CaiI	CAGNNNCTG	1 cut(s)	191
Cfr13I	GGNCC	3 cut(s)	228, 300, 306
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	3 cut(s)	181, 205, 256
CspCI	CAANNNNNGTGG	2 cut(s)	350, 385
CviAII	CATG	4 cut(s)	13, 54, 337, 425
CviJI	RGCY	8 cut(s)	48, 59, 91, 125, 235, 265, 332, 449
CviKI_1	RGCY	8 cut(s)	48, 59, 91, 125, 235, 265, 332, 449
CviQI	GTAC	3 cut(s)	181, 205, 256
DdeI	CTNAG	2 cut(s)	78, 326
DpnI	GATC	2 cut(s)	87, 251
DpnII	GATC	2 cut(s)	85, 249
EaeI	YGGCCR	1 cut(s)	123
Eam1104I	CTCTTC	2 cut(s)	23, 463
EarI	CTCTTC	2 cut(s)	23, 463
Eco130I	CCWWGG	1 cut(s)	126
Eco47I	GGWCC	3 cut(s)	228, 300, 306
Eco88I	CYCGRG	2 cut(s)	105, 134
EcoRI	GAATTC	1 cut(s)	374
EcoRII	CCWGG	2 cut(s)	260, 449
EcoT14I	CCWWGG	1 cut(s)	126
ErhI	CCWWGG	1 cut(s)	126
Esp3I	CGTCTC	1 cut(s)	465
FaeI	CATG	4 cut(s)	16, 57, 340, 428
FaiI	YATR	8 cut(s)	14, 55, 224, 338, 426, 487, 511, 513
FatI	CATG	4 cut(s)	12, 53, 336, 424
Fnu4HI	GCNGC	1 cut(s)	447
FokI	GGATG	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	447
GluI	GCNGC	1 cut(s)	447
GsaI	CCCAGC	1 cut(s)	95
GsuI	CTGGAG	2 cut(s)	137, 443
HaeIII	GGCC	2 cut(s)	125, 265
HapII	CCGG	1 cut(s)	303
HgaI	GACGC	1 cut(s)	350
Hin1I	GRCGYC	1 cut(s)	342
Hin1II	CATG	4 cut(s)	16, 57, 340, 428
HincII	GTYRAC	1 cut(s)	218
HindII	GTYRAC	1 cut(s)	218
HinfI	GANTC	6 cut(s)	80, 103, 119, 171, 214, 239
HpaII	CCGG	1 cut(s)	303
Hpy166II	GTNNAC	2 cut(s)	218, 258
Hpy188I	TCNGA	3 cut(s)	85, 232, 329
Hpy188III	TCNNGA	5 cut(s)	107, 356, 379, 416, 460
Hpy8I	GTNNAC	2 cut(s)	218, 258
HpyAV	CCTTC	1 cut(s)	356
HpyCH4IV	ACGT	1 cut(s)	474
HpyCH4V	TGCA	3 cut(s)	403, 446, 489
HpyF10VI	GCNNNNNNNGC	4 cut(s)	65, 241, 329, 428
HpyF3I	CTNAG	2 cut(s)	78, 326
HpySE526I	ACGT	1 cut(s)	474
Hsp92I	GRCGYC	1 cut(s)	342
Hsp92II	CATG	4 cut(s)	16, 57, 340, 428
Kzo9I	GATC	2 cut(s)	85, 249
LguI	GCTCTTC	1 cut(s)	23
Lsp1109I	GCAGC	1 cut(s)	458
LweI	GCATC	1 cut(s)	409
MaeII	ACGT	1 cut(s)	474
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	2 cut(s)	87, 251
MboI	GATC	2 cut(s)	85, 249
MboII	GAAGA	4 cut(s)	10, 180, 310, 480
MluCI	AATT	1 cut(s)	374
MlyI	GAGTC	5 cut(s)	89, 97, 128, 223, 233
MmeI	TCCRAC	1 cut(s)	63
MnlI	CCTC	2 cut(s)	156, 193
MseI	TTAA	1 cut(s)	44
MslI	CAYNNNNRTG	1 cut(s)	408
MspA1I	CMGCKG	1 cut(s)	91
MspCI	CTTAAG	1 cut(s)	43
MspI	CCGG	1 cut(s)	303
MspR9I	CCNGG	3 cut(s)	262, 304, 451
MvaI	CCWGG	2 cut(s)	262, 451
MwoI	GCNNNNNNNGC	4 cut(s)	65, 241, 329, 428
NciI	CCSGG	1 cut(s)	304
NdeII	GATC	2 cut(s)	85, 249
NlaIII	CATG	4 cut(s)	16, 57, 340, 428
NlaIV	GGNNCC	3 cut(s)	132, 301, 307
NmuCI	GTSAC	1 cut(s)	413
OliI	CACNNNNGTG	1 cut(s)	408
PciSI	GCTCTTC	1 cut(s)	23
PfeI	GAWTC	1 cut(s)	171
PflFI	GACNNNGTC	1 cut(s)	79
PflMI	CCANNNNNTGG	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	448
PleI	GAGTC	5 cut(s)	88, 97, 127, 222, 233
PpsI	GAGTC	5 cut(s)	88, 97, 127, 222, 233
Psp6I	CCWGG	2 cut(s)	260, 449
PspFI	CCCAGC	1 cut(s)	91
PspGI	CCWGG	2 cut(s)	260, 449
PspN4I	GGNNCC	3 cut(s)	132, 301, 307
PspPI	GGNCC	3 cut(s)	228, 300, 306
PstNI	CAGNNNCTG	1 cut(s)	191
PsyI	GACNNNGTC	1 cut(s)	79
PvuII	CAGCTG	1 cut(s)	91
RsaI	GTAC	3 cut(s)	182, 206, 257
RsaNI	GTAC	3 cut(s)	181, 205, 256
RseI	CAYNNNNRTG	1 cut(s)	408
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	44
SatI	GCNGC	1 cut(s)	447
Sau3AI	GATC	2 cut(s)	85, 249
Sau96I	GGNCC	3 cut(s)	228, 300, 306
SchI	GAGTC	5 cut(s)	89, 97, 128, 223, 233
ScrFI	CCNGG	3 cut(s)	262, 304, 451
SetI	ASST	8 cut(s)	93, 230, 237, 263, 334, 477, 486, 526
SfaNI	GCATC	1 cut(s)	409
SinI	GGWCC	3 cut(s)	228, 300, 306
SmiMI	CAYNNNNRTG	1 cut(s)	408
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
Sse9I	AATT	1 cut(s)	374
StyD4I	CCNGG	3 cut(s)	260, 302, 449
StyI	CCWWGG	1 cut(s)	126
TaiI	ACGT	1 cut(s)	477
TaqI	TCGA	1 cut(s)	198
TasI	AATT	1 cut(s)	374
TatI	WGTACW	2 cut(s)	204, 255
TfiI	GAWTC	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	1 cut(s)	446
Tsp45I	GTSAC	1 cut(s)	413
Tth111I	GACNNNGTC	1 cut(s)	79
Van91I	CCANNNNNTGG	1 cut(s)	191
Vha464I	CTTAAG	1 cut(s)	43
VpaK11BI	GGWCC	3 cut(s)	228, 300, 306
XapI	RAATTY	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.