Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001332

Physical Location & Seq

Genomic Coordinates Reverse (-)

13142318 .. 13144743

Gene Structure 2426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g19670.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 837 bp

ATGATAGGGTTGAGAAGAAGAATTCATCAGTATCCAGAACTGGGATTTCAAGAGCACAAGACGAGTGAACTCATCAGGTCCGAGCTTGACCTTCTTGGAGTTAAGTACAAGTGGCCTGTGGCCAAGACTGGAGTGGTGGTTTCAATTGGGACAGGTTCTAAACCAGTCTTTGCTCTTAGAGCTGACATGGGTGCTCTCCCTCTCCAGGAACTTGTAGAGTGGGAGTTCAAGAGCAAGATTGATGGAAAGATGCATGCTTGCGGCCACGATGCACATGTCGCAATGCTATTAGGAGCAGCCAAATTGCTTCAAGAAAAAAGAGATATATTGAAGGGAACTGTGAAGCTAGTTTTCCAGCCTGGAGAAGAGGGTTATGCTGGTGCTTACCATATGCTACAAGATGGTGTTTTAGATGATATTGACGGCATCTGTCCCCTGCATGTTTATCCACATATACCAACAGGTACTATAGCTTCGAGGCCTGGTCAAATACTTGGTGGTGTAGGGCTCTTCAAAGCTACAATACAAGGAATAGGAGGTCATGGTGCAGAGCCACATGAGACCAGGGACCCGATTGTTGCAGCAGCCTTCGCAACACTTGCTCTACAACAGATTGTGTCTCGAGAGAAAAATCCCCTTGAACCTGGAGTAATCACTTTGGCCTCCTCTTTCTGTGGTAACAGTAGGGTACATACAGGGTGGTCAAGCGGGAAATGTGATCCCAGAGTGTGTGAAGCTTGGAGGAACATACAGGAGCTTAACTTCAGAGGGTCTCTACTATATCCAAGAAAGGATCAGACAGGTCATAGAGCAGCAAGCAGCTGTGCATCGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0008150 GO:0008152 GO:0009850 GO:0009987 GO:0010178 GO:0010210 GO:0010211 GO:0010817 GO:0012505 GO:0016787 GO:0016810 GO:0042445 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0065007 GO:0065008

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

M20_dimer Peptidase_M20

Protein Analysis

279

Amino Acids

30.2

Weight (kDa)

8.49

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M20	PF01546	58 - 372	3.3e-37	Peptidase family M20/M25/M40
M20_dimer	PF07687	168 - 266	1.1e-10	Peptidase dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02875 AT3G02875 AT3G02875
fragaria_vesca	FvH4_6g19670 FvH4_6g19670 FvH4_6g19670 FvH4_6g19670 FvH4_6g19690 FvH4_6g19700 FvH4_6g19700
malus_domestica	MD14G1032600.v1.1 MD14G1032900.v1.1 MD14G1033000.v1.1 MD14G1033100.v1.1
prunus_persica	Prupe.7G099900_v2.0.a1 Prupe.7G100000_v2.0.a1 Prupe.7G100000_v2.0.a1
pyrus_communis	pycom14g02930 pycom14g02940
rosa_chinensis	RchiOBHm_Chr3g0475011 RchiOBHm_Chr3g0475021 RchiOBHm_Chr3g0475031
rosa_laevigata	RLG00000023869 RLG00000023870 RLG00000023871
rosa_multiflora	Rmu_sc0003093.1_g000010 Rmu_sc0003093.1_g000011 Rmu_sc0003093.1_g000012 Rmu_sc0003093.1_g000017
rosa_roxburghii	Rroxscaffold_6G00406610 Rroxscaffold_6G00406620 Rroxscaffold_6G00406630
rosa_rugosa	Rorug03G0146000 Rorug03G0146100 Rorug03G0146200 Rorug03G0146300 Rorug03G0146300 Rorug03G0146300
rosa_samantha	Rh3AG195700 Rh3AG195900 Rh3AG196000 Rh3BG225900 Rh3BG226100 Rh3BG226200 Rh3CG220700 Rh3CG221000 Rh3CG221200 Rh3DG221200 Rh3DG221300 Rh3DG221400
rosa_wichuraiana	Rw3G017820 Rw3G017830 Rw3G017840 Rw3G017860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	261, 708
AclWI	GGATC	2 cut(s)	713, 801
AcoI	YGGCCR	2 cut(s)	120, 262
AcsI	RAATTY	1 cut(s)	21
AcuI	CTGAAG	1 cut(s)	748
AfaI	GTAC	3 cut(s)	107, 466, 690
AfiI	CCNNNNNNNGG	2 cut(s)	41, 205
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	7 cut(s)	50, 144, 229, 311, 331, 514, 641
AjnI	CCWGG	5 cut(s)	204, 358, 481, 563, 643
AluBI	AGCT	8 cut(s)	85, 182, 346, 473, 518, 737, 757, 822
AluI	AGCT	8 cut(s)	85, 182, 346, 473, 518, 737, 757, 822
Alw21I	GWGCWC	2 cut(s)	57, 196
Alw26I	GTCTC	3 cut(s)	554, 624, 777
AlwI	GGATC	2 cut(s)	713, 801
Ama87I	CYCGRG	1 cut(s)	621
AoxI	GGCC	5 cut(s)	113, 120, 262, 479, 660
ApeKI	GCWGC	5 cut(s)	296, 581, 584, 812, 819
ApoI	RAATTY	1 cut(s)	21
AspS9I	GGNCC	2 cut(s)	78, 568
AvaI	CYCGRG	1 cut(s)	621
AvaII	GGWCC	2 cut(s)	78, 568
BalI	TGGCCA	1 cut(s)	122
BanII	GRGCYC	1 cut(s)	510
BarI	GAAGNNNNNNTAC	2 cut(s)	457, 489
Bbv12I	GWGCWC	2 cut(s)	57, 196
BbvI	GCAGC	5 cut(s)	308, 593, 596, 824, 831
BccI	CCATC	2 cut(s)	236, 395
BceAI	ACGGC	1 cut(s)	439
BciT130I	CCWGG	5 cut(s)	206, 360, 483, 565, 645
BciVI	GTATCC	1 cut(s)	42
BcoDI	GTCTC	3 cut(s)	554, 624, 777
BfaI	CTAG	1 cut(s)	347
BfmI	CTRYAG	1 cut(s)	468
BfuI	GTATCC	1 cut(s)	42
BisI	GCNGC	6 cut(s)	262, 297, 582, 585, 813, 820
BlsI	GCNGC	6 cut(s)	263, 298, 583, 586, 814, 821
Bme1390I	CCNGG	5 cut(s)	206, 360, 483, 565, 645
Bme18I	GGWCC	2 cut(s)	78, 568
BmeT110I	CYCGRG	1 cut(s)	621
BmgT120I	GGNCC	2 cut(s)	78, 568
BmiI	GGNNCC	2 cut(s)	569, 570
BmrFI	CCNGG	5 cut(s)	206, 360, 483, 565, 645
BmrI	ACTGGG	1 cut(s)	50
BmsI	GCATC	3 cut(s)	240, 259, 435
BmuI	ACTGGG	1 cut(s)	50
BpmI	CTGGAG	4 cut(s)	150, 188, 381, 666
BsaI	GGTCTC	2 cut(s)	554, 777
BsaJI	CCNNGG	1 cut(s)	564
BsaXI	ACNNNNNCTCC	2 cut(s)	123, 153
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 205
Bse1I	ACTGG	3 cut(s)	45, 133, 164
Bse3DI	GCAATG	1 cut(s)	288
BseBI	CCWGG	5 cut(s)	206, 360, 483, 565, 645
BseDI	CCNNGG	1 cut(s)	564
BseLI	CCNNNNNNNGG	2 cut(s)	41, 205
BseMI	GCAATG	1 cut(s)	288
BseNI	ACTGG	3 cut(s)	45, 133, 164
BseRI	GAGGAG	1 cut(s)	655
BseXI	GCAGC	5 cut(s)	308, 593, 596, 824, 831
BsgI	GTGCAG	1 cut(s)	567
BshFI	GGCC	5 cut(s)	115, 122, 264, 481, 662
BsiHKAI	GWGCWC	2 cut(s)	57, 196
BsiHKCI	CYCGRG	1 cut(s)	621
BslFI	GGGAC	3 cut(s)	163, 417, 581
BslI	CCNNNNNNNGG	2 cut(s)	41, 205
BsmAI	GTCTC	3 cut(s)	554, 624, 777
BsmFI	GGGAC	3 cut(s)	163, 417, 581
BsnI	GGCC	5 cut(s)	115, 122, 264, 481, 662
Bso31I	GGTCTC	2 cut(s)	554, 777
BsoBI	CYCGRG	1 cut(s)	621
Bsp1286I	GDGCHC	3 cut(s)	57, 196, 510
Bsp143I	GATC	2 cut(s)	718, 793
BspACI	CCGC	2 cut(s)	261, 708
BspANI	GGCC	5 cut(s)	115, 122, 264, 481, 662
BspLI	GGNNCC	2 cut(s)	569, 570
BspPI	GGATC	2 cut(s)	713, 801
BspQI	GCTCTTC	1 cut(s)	515
BspTNI	GGTCTC	2 cut(s)	554, 777
BsrDI	GCAATG	1 cut(s)	288
BsrI	ACTGG	3 cut(s)	45, 133, 164
BssECI	CCNNGG	1 cut(s)	564
BssMI	GATC	2 cut(s)	718, 793
Bst2UI	CCWGG	5 cut(s)	206, 360, 483, 565, 645
Bst4CI	ACNGT	2 cut(s)	340, 683
Bst6I	CTCTTC	2 cut(s)	360, 515
BstAPI	GCANNNNNTGC	1 cut(s)	599
BstC8I	GCNNGC	3 cut(s)	255, 259, 817
BstDEI	CTNAG	1 cut(s)	176
BstKTI	GATC	2 cut(s)	721, 796
BstMAI	GTCTC	3 cut(s)	554, 624, 777
BstMBI	GATC	2 cut(s)	718, 793
BstMWI	GCNNNNNNNGC	4 cut(s)	179, 278, 590, 599
BstNI	CCWGG	5 cut(s)	206, 360, 483, 565, 645
BstNSI	RCATGY	3 cut(s)	257, 278, 443
BstSCI	CCNGG	5 cut(s)	204, 358, 481, 563, 643
BstSFI	CTRYAG	1 cut(s)	468
BstV1I	GCAGC	5 cut(s)	308, 593, 596, 824, 831
BsuI	GTATCC	1 cut(s)	42
BsuRI	GGCC	5 cut(s)	115, 122, 264, 481, 662
Cac8I	GCNNGC	3 cut(s)	255, 259, 817
Cfr13I	GGNCC	2 cut(s)	78, 568
Csp6I	GTAC	3 cut(s)	106, 465, 689
CviAII	CATG	6 cut(s)	187, 254, 275, 440, 542, 557
CviQI	GTAC	3 cut(s)	106, 465, 689
DdeI	CTNAG	1 cut(s)	176
DpnI	GATC	2 cut(s)	720, 795
DpnII	GATC	2 cut(s)	718, 793
EaeI	YGGCCR	2 cut(s)	120, 262
Eam1104I	CTCTTC	2 cut(s)	360, 515
EarI	CTCTTC	2 cut(s)	360, 515
Eco147I	AGGCCT	1 cut(s)	481
Eco24I	GRGCYC	1 cut(s)	510
Eco31I	GGTCTC	2 cut(s)	554, 777
Eco47I	GGWCC	2 cut(s)	78, 568
Eco57I	CTGAAG	1 cut(s)	748
Eco88I	CYCGRG	1 cut(s)	621
EcoO109I	RGGNCCY	1 cut(s)	568
EcoRI	GAATTC	1 cut(s)	21
EcoRII	CCWGG	5 cut(s)	204, 358, 481, 563, 643
EcoT22I	ATGCAT	1 cut(s)	255
EcoT38I	GRGCYC	1 cut(s)	510
FaeI	CATG	6 cut(s)	190, 257, 278, 443, 545, 560
FaqI	GGGAC	3 cut(s)	163, 417, 581
FatI	CATG	6 cut(s)	186, 253, 274, 439, 541, 556
FauI	CCCGC	1 cut(s)	701
FauNDI	CATATG	1 cut(s)	390
Fnu4HI	GCNGC	6 cut(s)	262, 297, 582, 585, 813, 820
FriOI	GRGCYC	1 cut(s)	510
Fsp4HI	GCNGC	6 cut(s)	262, 297, 582, 585, 813, 820
FspBI	CTAG	1 cut(s)	347
GluI	GCNGC	6 cut(s)	262, 297, 582, 585, 813, 820
GsuI	CTGGAG	4 cut(s)	150, 188, 381, 666
HaeIII	GGCC	5 cut(s)	115, 122, 264, 481, 662
Hin1II	CATG	6 cut(s)	190, 257, 278, 443, 545, 560
HindIII	AAGCTT	1 cut(s)	735
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	3 cut(s)	82, 767, 798
Hpy188III	TCNNGA	6 cut(s)	35, 50, 229, 311, 621, 623
Hpy8I	GTNNAC	1 cut(s)	68
HpyAV	CCTTC	3 cut(s)	101, 325, 598
HpyCH4III	ACNGT	2 cut(s)	340, 683
HpyCH4V	TGCA	6 cut(s)	253, 272, 439, 548, 581, 827
HpyF10VI	GCNNNNNNNGC	4 cut(s)	179, 278, 590, 599
HpyF3I	CTNAG	1 cut(s)	176
Hsp92II	CATG	6 cut(s)	190, 257, 278, 443, 545, 560
KflI	GGGWCCC	1 cut(s)	568
Kzo9I	GATC	2 cut(s)	718, 793
LguI	GCTCTTC	1 cut(s)	515
LmnI	GCTCC	2 cut(s)	293, 754
Lsp1109I	GCAGC	5 cut(s)	308, 593, 596, 824, 831
LweI	GCATC	3 cut(s)	240, 259, 435
MaeI	CTAG	1 cut(s)	347
MaeIII	GTNAC	1 cut(s)	677
MalI	GATC	2 cut(s)	720, 795
MboI	GATC	2 cut(s)	718, 793
MboII	GAAGA	4 cut(s)	27, 30, 377, 502
MfeI	CAATTG	1 cut(s)	144
MhlI	GDGCHC	3 cut(s)	57, 196, 510
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	3 cut(s)	21, 144, 302
MluNI	TGGCCA	1 cut(s)	122
MnlI	CCTC	8 cut(s)	210, 361, 471, 530, 673, 676, 735, 761
Mox20I	TGGCCA	1 cut(s)	122
Mph1103I	ATGCAT	1 cut(s)	255
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	2 cut(s)	102, 759
Msp20I	TGGCCA	1 cut(s)	122
MspA1I	CMGCKG	1 cut(s)	822
MspR9I	CCNGG	5 cut(s)	206, 360, 483, 565, 645
MunI	CAATTG	1 cut(s)	144
MvaI	CCWGG	5 cut(s)	206, 360, 483, 565, 645
MwoI	GCNNNNNNNGC	4 cut(s)	179, 278, 590, 599
NdeI	CATATG	1 cut(s)	390
NdeII	GATC	2 cut(s)	718, 793
NlaIII	CATG	6 cut(s)	190, 257, 278, 443, 545, 560
NlaIV	GGNNCC	2 cut(s)	569, 570
NsiI	ATGCAT	1 cut(s)	255
NspI	RCATGY	3 cut(s)	257, 278, 443
PaeI	GCATGC	1 cut(s)	257
PaeR7I	CTCGAG	1 cut(s)	621
PceI	AGGCCT	1 cut(s)	481
PciI	ACATGT	1 cut(s)	274
PciSI	GCTCTTC	1 cut(s)	515
PfoI	TCCNGGA	1 cut(s)	204
PkrI	GCNGC	6 cut(s)	263, 298, 583, 586, 814, 821
PpuMI	RGGWCCY	1 cut(s)	568
PscI	ACATGT	1 cut(s)	274
Psp5II	RGGWCCY	1 cut(s)	568
Psp6I	CCWGG	5 cut(s)	204, 358, 481, 563, 643
PspGI	CCWGG	5 cut(s)	204, 358, 481, 563, 643
PspN4I	GGNNCC	2 cut(s)	569, 570
PspPI	GGNCC	2 cut(s)	78, 568
PspPPI	RGGWCCY	1 cut(s)	568
PvuII	CAGCTG	1 cut(s)	822
RsaI	GTAC	3 cut(s)	107, 466, 690
RsaNI	GTAC	3 cut(s)	106, 465, 689
SapI	GCTCTTC	1 cut(s)	515
SaqAI	TTAA	2 cut(s)	102, 759
SatI	GCNGC	6 cut(s)	262, 297, 582, 585, 813, 820
Sau3AI	GATC	2 cut(s)	718, 793
Sau96I	GGNCC	2 cut(s)	78, 568
ScrFI	CCNGG	5 cut(s)	206, 360, 483, 565, 645
SduI	GDGCHC	3 cut(s)	57, 196, 510
SfaNI	GCATC	3 cut(s)	240, 259, 435
SfcI	CTRYAG	1 cut(s)	468
Sfr274I	CTCGAG	1 cut(s)	621
SinI	GGWCC	2 cut(s)	78, 568
SlaI	CTCGAG	1 cut(s)	621
SmlI	CTYRAG	1 cut(s)	621
SmoI	CTYRAG	1 cut(s)	621
SphI	GCATGC	1 cut(s)	257
Sse9I	AATT	3 cut(s)	21, 144, 302
SseBI	AGGCCT	1 cut(s)	481
SsiI	CCGC	2 cut(s)	261, 708
SspMI	CTAG	1 cut(s)	347
StuI	AGGCCT	1 cut(s)	481
StyD4I	CCNGG	5 cut(s)	204, 358, 481, 563, 643
TaaI	ACNGT	2 cut(s)	340, 683
TaqI	TCGA	2 cut(s)	476, 622
TasI	AATT	3 cut(s)	21, 144, 302
TatI	WGTACW	1 cut(s)	105
TauI	GCSGC	1 cut(s)	264
Tru1I	TTAA	2 cut(s)	102, 759
Tru9I	TTAA	2 cut(s)	102, 759
TseI	GCWGC	5 cut(s)	296, 581, 584, 812, 819
TspDTI	ATGAA	1 cut(s)	14
VpaK11BI	GGWCC	2 cut(s)	78, 568
XapI	RAATTY	1 cut(s)	21
XceI	RCATGY	3 cut(s)	257, 278, 443
XcmI	CCANNNNNNNNNTGG	1 cut(s)	130
XhoI	CTCGAG	1 cut(s)	621
XspI	CTAG	1 cut(s)	347
Zsp2I	ATGCAT	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.