pycom14g02940

Iaa-amino acid hydrolase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Reverse (-)
2266086 .. 2269907
3822 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g02940.5

Sequence Viewer

Length: 1305 bp
ATGGCTGCGTTGATGCTCTTGTACTTATTGCTGCCAACGATTTTAGGCCAGTCTTGGGCTTCGGAACCAACTGAGTCAGAGCTCGAATTGCTGACTCGGGAGCTCTTGGAATCGGCGAAGGAGGCCGAGTTCTTTGCGTGGATGACGGGAGTGAGGAGGAGAATCCACCAGTACCCAGAGACTGGGTTCGAGGAGCACAGGACGAGTCAACTCATCAGGACCGAGCTCGAGTCGCTAGGAATTGAGTACACGTGGCCTGTTGCCAAGACTGGTGTGGTGGCTTCCGTTGGTTCTGGCTCCAAACCAGTGTTTGCTCTCAGGGCTGACATGGACGCCCTCCCTCTTCAGGAACAAGTAGAGTGGGAGTTCAAGAGCAAGATAGATGGCAAAATGCACGCATGCGGTCACGATTCTCATGTGGCAATGCTGCTTGGCGCAGCCAAGTTACTCCAAAGTAAAAGAGACATTCTAAAGGGAACTGTGAAGCTGGTTTTTCAGCCTGGAGAAGAGGGTTATGCCGGAGCTTACCATATGTTACAACATGGCATTCTTAACGATATTGATGCCATCTTCTTCATACATGTTGTGCCATCACTGCCAACTGGTGTCATTGCTTCCCGGCCGGGTCCAATGCTAGCCGGCGCTGGCCTTTTTTCAGCAACAATCAAAGGAAAAGGTGGGCATGCAGCTGCTCCACATAAGAATAAGGACTCAATTCTTGCAGCAGCATCAGCTGTTGTGGCTCTTCAGCAGATTGTTTCAAGAGAGACAAATCCCCTTGAAGCTGGGGTGGTGACAGTTGGGTACTTAAAGGGAGGTGAAGCAGAAAATGTGATCCCCGAGTCCGTGAACTTTGGGGGAACTTTTAGGAGCTTGACAATGGAAGGACTCAGCCATATCCAAGAAAGGATCAAAGAGGTCATAGAACTGCAAGCAGCCGTGCATCGGTGTGAGGGTACAGTGGACTTCATGGAGGAAACACCGCTGCCTTATCCAGTGATGATTAACAACGAAGCATTGTATGAGCACGCAAAGAAGGTTGGTGAGGTTCTACTCGGGGAACCTAATGTGGAGCTTCACCCATTGATCATGGGAGCAGAGGATTTCAGCTTCTACTCACATAAGTTTGCGGCTGCAATTTTCGTTCTCGGGATAAAGAATGAGAGTCTAAAATCAGACCAGCCATTGCACTCCTCTCTATTTGTCATTGACGAACAGGCTTTTTCTGTTGGAGCAGCTCTCAATGCTGCTGTTGCAATATCTTACTTGGATACACATGACGTTGGGAACTCATTAAAAATTTGA

Protein Analysis

435

Amino Acids

47.15

Weight (kDa)

5.4

Isoelectric Point (pI)

39.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 182
AciI CCGC 3 cut(s) 402, 983, 1130
AclWI GGATC 2 cut(s) 829, 917
AcoI YGGCCR 1 cut(s) 620
AcsI RAATTY 1 cut(s) 1299
AcuI CTGAAG 2 cut(s) 329, 731
AcvI CACGTG 1 cut(s) 252
AcyI GRCGYC 1 cut(s) 333
AfaI GTAC 5 cut(s) 23, 173, 248, 806, 958
AfiI CCNNNNNNNGG 4 cut(s) 55, 182, 346, 945
AflIII ACRYGT 2 cut(s) 249, 580
AgsI TTSAA 3 cut(s) 370, 762, 782
AjnI CCWGG 1 cut(s) 499
AloI GAACNNNNNNTCC 2 cut(s) 113, 145
Alw21I GWGCWC 5 cut(s) 84, 105, 198, 228, 1029
Alw26I GTCTC 3 cut(s) 173, 456, 761
AlwI GGATC 2 cut(s) 829, 917
AlwNI CAGNNNCTG 1 cut(s) 182
Ama87I CYCGRG 5 cut(s) 96, 227, 839, 1055, 1148
AoxI GGCC 5 cut(s) 46, 123, 254, 620, 646
ApoI RAATTY 1 cut(s) 1299
AspLEI GCGC 2 cut(s) 437, 644
AspS9I GGNCC 2 cut(s) 219, 626
AsuC2I CCSGG 2 cut(s) 619, 624
AsuHPI GGTGA 4 cut(s) 805, 830, 1055, 1070
AsuNHI GCTAGC 1 cut(s) 634
AvaI CYCGRG 5 cut(s) 96, 227, 839, 1055, 1148
AvaII GGWCC 2 cut(s) 219, 626
BanII GRGCYC 3 cut(s) 84, 105, 228
BbrPI CACGTG 1 cut(s) 252
Bbv12I GWGCWC 5 cut(s) 84, 105, 198, 228, 1029
BccI CCATC 3 cut(s) 377, 575, 598
BceAI ACGGC 1 cut(s) 923
BcgI CGANNNNNNTGC 4 cut(s) 116, 150, 545, 579
BciT130I CCWGG 1 cut(s) 501
BciVI GTATCC 1 cut(s) 1264
BclI TGATCA 1 cut(s) 1086
BcnI CCSGG 2 cut(s) 619, 624
BcoDI GTCTC 3 cut(s) 173, 456, 761
BfaI CTAG 2 cut(s) 236, 635
BfoI RGCGCY 1 cut(s) 645
BfuI GTATCC 1 cut(s) 1264
Bme1390I CCNGG 3 cut(s) 501, 619, 624
Bme18I GGWCC 2 cut(s) 219, 626
BmeT110I CYCGRG 5 cut(s) 96, 227, 839, 1055, 1148
BmgT120I GGNCC 2 cut(s) 219, 626
BmiI GGNNCC 4 cut(s) 66, 298, 627, 1062
BmrFI CCNGG 3 cut(s) 501, 619, 624
BmrI ACTGGG 1 cut(s) 192
BmsI GCATC 4 cut(s) 3, 553, 737, 952
BmtI GCTAGC 1 cut(s) 638
BmuI ACTGGG 1 cut(s) 192
BplI GAGNNNNNCTC 2 cut(s) 1224, 1256
BpmI CTGGAG 1 cut(s) 522
BpuMI CCSGG 2 cut(s) 619, 624
BsaAI YACGTR 1 cut(s) 252
BsaHI GRCGYC 1 cut(s) 333
BsaXI ACNNNNNCTCC 2 cut(s) 113, 143
Bsc4I CCNNNNNNNGG 4 cut(s) 55, 182, 346, 945
Bse118I RCCGGY 1 cut(s) 638
Bse1I ACTGG 7 cut(s) 49, 169, 187, 274, 305, 607, 995
Bse3DI GCAATG 3 cut(s) 429, 609, 1184
BseBI CCWGG 1 cut(s) 501
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 4 cut(s) 55, 182, 346, 945
BseMI GCAATG 3 cut(s) 429, 609, 1184
BseMII CTCAG 3 cut(s) 63, 331, 904
BseNI ACTGG 7 cut(s) 49, 169, 187, 274, 305, 607, 995
BseRI GAGGAG 4 cut(s) 169, 172, 206, 1183
BseX3I CGGCCG 1 cut(s) 620
BseYI CCCAGC 1 cut(s) 785
Bsh1285I CGRYCG 1 cut(s) 623
BshFI GGCC 5 cut(s) 48, 125, 256, 622, 648
BsiEI CGRYCG 1 cut(s) 623
BsiHKAI GWGCWC 5 cut(s) 84, 105, 198, 228, 1029
BsiHKCI CYCGRG 5 cut(s) 96, 227, 839, 1055, 1148
BsiSI CCGG 4 cut(s) 519, 619, 623, 639
BslI CCNNNNNNNGG 4 cut(s) 55, 182, 346, 945
BsmAI GTCTC 3 cut(s) 173, 456, 761
BsmI GAATGC 1 cut(s) 546
BsnI GGCC 5 cut(s) 48, 125, 256, 622, 648
BsoBI CYCGRG 5 cut(s) 96, 227, 839, 1055, 1148
Bsp1286I GDGCHC 5 cut(s) 84, 105, 198, 228, 1029
Bsp143I GATC 3 cut(s) 834, 909, 1086
BspACI CCGC 3 cut(s) 402, 983, 1130
BspANI GGCC 5 cut(s) 48, 125, 256, 622, 648
BspCNI CTCAG 3 cut(s) 64, 330, 903
BspLI GGNNCC 4 cut(s) 66, 298, 627, 1062
BspOI GCTAGC 1 cut(s) 638
BspPI GGATC 2 cut(s) 829, 917
BspQI GCTCTTC 1 cut(s) 750
BsrDI GCAATG 3 cut(s) 429, 609, 1184
BsrFI RCCGGY 1 cut(s) 638
BsrI ACTGG 7 cut(s) 49, 169, 187, 274, 305, 607, 995
BssAI RCCGGY 1 cut(s) 638
BssMI GATC 3 cut(s) 834, 909, 1086
BssNI GRCGYC 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 3 cut(s) 481, 799, 961
Bst6I CTCTTC 3 cut(s) 348, 501, 750
BstACI GRCGYC 1 cut(s) 333
BstBAI YACGTR 1 cut(s) 252
BstC8I GCNNGC 8 cut(s) 396, 400, 636, 640, 646, 684, 933, 1029
BstDEI CTNAG 3 cut(s) 72, 317, 890
BstF5I GGATG 1 cut(s) 147
BstH2I RGCGCY 1 cut(s) 645
BstHHI GCGC 2 cut(s) 437, 644
BstKTI GATC 3 cut(s) 837, 912, 1089
BstMAI GTCTC 3 cut(s) 173, 456, 761
BstMBI GATC 3 cut(s) 834, 909, 1086
BstMCI CGRYCG 1 cut(s) 623
BstMWI GCNNNNNNNGC 9 cut(s) 88, 122, 232, 320, 595, 731, 740, 1244, 1253
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 3 cut(s) 402, 584, 686
BstSCI CCNGG 3 cut(s) 499, 617, 622
BstZI CGGCCG 1 cut(s) 620
BsuI GTATCC 1 cut(s) 1264
BsuRI GGCC 5 cut(s) 48, 125, 256, 622, 648
BtsCI GGATG 1 cut(s) 147
BtsI GCAGTG 1 cut(s) 593
BtsIMutI CAGTG 4 cut(s) 312, 593, 966, 1002
Cac8I GCNNGC 8 cut(s) 396, 400, 636, 640, 646, 684, 933, 1029
CaiI CAGNNNCTG 1 cut(s) 182
CfoI GCGC 2 cut(s) 437, 644
Cfr10I RCCGGY 1 cut(s) 638
Cfr13I GGNCC 2 cut(s) 219, 626
CseI GACGC 1 cut(s) 341
Csp6I GTAC 5 cut(s) 22, 172, 247, 805, 957
CspCI CAANNNNNGTGG 2 cut(s) 341, 376
CviAII CATG 9 cut(s) 328, 399, 416, 542, 581, 683, 970, 1090, 1277
CviQI GTAC 5 cut(s) 22, 172, 247, 805, 957
DdeI CTNAG 3 cut(s) 72, 317, 890
DpnI GATC 3 cut(s) 836, 911, 1088
DpnII GATC 3 cut(s) 834, 909, 1086
EaeI YGGCCR 1 cut(s) 620
EagI CGGCCG 1 cut(s) 620
Eam1104I CTCTTC 3 cut(s) 348, 501, 750
EarI CTCTTC 3 cut(s) 348, 501, 750
Ecl136II GAGCTC 3 cut(s) 82, 103, 226
EclXI CGGCCG 1 cut(s) 620
Eco24I GRGCYC 3 cut(s) 84, 105, 228
Eco47I GGWCC 2 cut(s) 219, 626
Eco52I CGGCCG 1 cut(s) 620
Eco53kI GAGCTC 3 cut(s) 82, 103, 226
Eco57I CTGAAG 2 cut(s) 329, 731
Eco72I CACGTG 1 cut(s) 252
Eco88I CYCGRG 5 cut(s) 96, 227, 839, 1055, 1148
EcoICRI GAGCTC 3 cut(s) 82, 103, 226
EcoRII CCWGG 1 cut(s) 499
EcoT38I GRGCYC 3 cut(s) 84, 105, 228
FaeI CATG 9 cut(s) 331, 402, 419, 545, 584, 686, 973, 1093, 1280
FatI CATG 9 cut(s) 327, 398, 415, 541, 580, 682, 969, 1089, 1276
FauNDI CATATG 1 cut(s) 531
FbaI TGATCA 1 cut(s) 1086
FokI GGATG 1 cut(s) 154
FriOI GRGCYC 3 cut(s) 84, 105, 228
FspBI CTAG 2 cut(s) 236, 635
GlaI GCGC 2 cut(s) 436, 643
GsaI CCCAGC 1 cut(s) 789
GsuI CTGGAG 1 cut(s) 522
HaeII RGCGCY 1 cut(s) 645
HaeIII GGCC 5 cut(s) 48, 125, 256, 622, 648
HapII CCGG 4 cut(s) 519, 619, 623, 639
HgaI GACGC 1 cut(s) 341
HhaI GCGC 2 cut(s) 437, 644
Hin1I GRCGYC 1 cut(s) 333
Hin1II CATG 9 cut(s) 331, 402, 419, 545, 584, 686, 973, 1093, 1280
Hin6I GCGC 2 cut(s) 435, 642
HinP1I GCGC 2 cut(s) 435, 642
HincII GTYRAC 1 cut(s) 209
HindII GTYRAC 1 cut(s) 209
HpaII CCGG 4 cut(s) 519, 619, 623, 639
HphI GGTGA 4 cut(s) 805, 830, 1055, 1070
Hpy166II GTNNAC 4 cut(s) 209, 249, 850, 964
Hpy188I TCNGA 3 cut(s) 64, 79, 1177
Hpy188III TCNNGA 7 cut(s) 98, 217, 347, 370, 407, 762, 1150
Hpy8I GTNNAC 4 cut(s) 209, 249, 850, 964
HpyAV CCTTC 3 cut(s) 112, 878, 1030
HpyCH4III ACNGT 3 cut(s) 481, 799, 961
HpyCH4IV ACGT 2 cut(s) 251, 1281
HpyCH4V TGCA 8 cut(s) 394, 686, 722, 931, 943, 1136, 1189, 1256
HpyF10VI GCNNNNNNNGC 9 cut(s) 88, 122, 232, 320, 595, 731, 740, 1244, 1253
HpyF3I CTNAG 3 cut(s) 72, 317, 890
HpySE526I ACGT 2 cut(s) 251, 1281
Hsp92I GRCGYC 1 cut(s) 333
Hsp92II CATG 9 cut(s) 331, 402, 419, 545, 584, 686, 973, 1093, 1280
HspAI GCGC 2 cut(s) 435, 642
KroI GCCGGC 1 cut(s) 638
KroNI GCCGGC 1 cut(s) 640
Ksp22I TGATCA 1 cut(s) 1086
Kzo9I GATC 3 cut(s) 834, 909, 1086
LguI GCTCTTC 1 cut(s) 750
LmnI GCTCC 9 cut(s) 100, 193, 302, 521, 697, 870, 1072, 1094, 1232
LweI GCATC 4 cut(s) 3, 553, 737, 952
MaeI CTAG 2 cut(s) 236, 635
MaeII ACGT 2 cut(s) 251, 1281
MaeIII GTNAC 4 cut(s) 404, 444, 534, 793
MalI GATC 3 cut(s) 836, 911, 1088
MboI GATC 3 cut(s) 834, 909, 1086
MboII GAAGA 5 cut(s) 335, 518, 562, 565, 737
MhlI GDGCHC 5 cut(s) 84, 105, 198, 228, 1029
MluCI AATT 5 cut(s) 86, 240, 714, 1137, 1299
MlyI GAGTC 8 cut(s) 83, 88, 214, 239, 704, 851, 882, 1174
MmeI TCCRAC 1 cut(s) 1210
MroNI GCCGGC 1 cut(s) 638
MseI TTAA 4 cut(s) 552, 809, 1005, 1295
MslI CAYNNNNRTG 1 cut(s) 948
MspA1I CMGCKG 3 cut(s) 689, 734, 985
MspI CCGG 4 cut(s) 519, 619, 623, 639
MspR9I CCNGG 3 cut(s) 501, 619, 624
Mva1269I GAATGC 1 cut(s) 546
MvaI CCWGG 1 cut(s) 501
MwoI GCNNNNNNNGC 9 cut(s) 88, 122, 232, 320, 595, 731, 740, 1244, 1253
NaeI GCCGGC 1 cut(s) 640
NciI CCSGG 2 cut(s) 619, 624
NdeI CATATG 1 cut(s) 531
NdeII GATC 3 cut(s) 834, 909, 1086
NgoMIV GCCGGC 1 cut(s) 638
NheI GCTAGC 1 cut(s) 634
NlaIII CATG 9 cut(s) 331, 402, 419, 545, 584, 686, 973, 1093, 1280
NlaIV GGNNCC 4 cut(s) 66, 298, 627, 1062
NmeAIII GCCGAG 1 cut(s) 151
NmuCI GTSAC 2 cut(s) 404, 793
NspI RCATGY 3 cut(s) 402, 584, 686
PaeI GCATGC 2 cut(s) 402, 686
PaeR7I CTCGAG 1 cut(s) 227
PciI ACATGT 1 cut(s) 580
PciSI GCTCTTC 1 cut(s) 750
PctI GAATGC 1 cut(s) 546
PdiI GCCGGC 1 cut(s) 640
PfeI GAWTC 3 cut(s) 110, 162, 410
PflMI CCANNNNNTGG 1 cut(s) 182
PleI GAGTC 8 cut(s) 82, 88, 213, 238, 704, 850, 882, 1173
PmaCI CACGTG 1 cut(s) 252
PmlI CACGTG 1 cut(s) 252
PpsI GAGTC 8 cut(s) 82, 88, 213, 238, 704, 850, 882, 1173
Ppu21I YACGTR 1 cut(s) 252
PscI ACATGT 1 cut(s) 580
Psp124BI GAGCTC 3 cut(s) 84, 105, 228
Psp6I CCWGG 1 cut(s) 499
PspCI CACGTG 1 cut(s) 252
PspFI CCCAGC 1 cut(s) 785
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 4 cut(s) 66, 298, 627, 1062
PspPI GGNCC 2 cut(s) 219, 626
PspXI VCTCGAGB 1 cut(s) 227
PstNI CAGNNNCTG 1 cut(s) 182
PvuII CAGCTG 2 cut(s) 689, 734
RsaI GTAC 5 cut(s) 23, 173, 248, 806, 958
RsaNI GTAC 5 cut(s) 22, 172, 247, 805, 957
RseI CAYNNNNRTG 1 cut(s) 948
SacI GAGCTC 3 cut(s) 84, 105, 228
SapI GCTCTTC 1 cut(s) 750
SaqAI TTAA 4 cut(s) 552, 809, 1005, 1295
Sau3AI GATC 3 cut(s) 834, 909, 1086
Sau96I GGNCC 2 cut(s) 219, 626
SchI GAGTC 8 cut(s) 83, 88, 214, 239, 704, 851, 882, 1174
ScrFI CCNGG 3 cut(s) 501, 619, 624
SduI GDGCHC 5 cut(s) 84, 105, 198, 228, 1029
SfaNI GCATC 4 cut(s) 3, 553, 737, 952
Sfr274I CTCGAG 1 cut(s) 227
SinI GGWCC 2 cut(s) 219, 626
SlaI CTCGAG 1 cut(s) 227
SmiMI CAYNNNNRTG 1 cut(s) 948
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SphI GCATGC 2 cut(s) 402, 686
Sse9I AATT 5 cut(s) 86, 240, 714, 1137, 1299
SsiI CCGC 3 cut(s) 402, 983, 1130
SspMI CTAG 2 cut(s) 236, 635
SstI GAGCTC 3 cut(s) 84, 105, 228
StyD4I CCNGG 3 cut(s) 499, 617, 622
TaaI ACNGT 3 cut(s) 481, 799, 961
TaiI ACGT 2 cut(s) 254, 1284
TaqI TCGA 3 cut(s) 84, 189, 228
TaqII GACCGA 1 cut(s) 236
TasI AATT 5 cut(s) 86, 240, 714, 1137, 1299
TatI WGTACW 2 cut(s) 21, 246
TauI GCSGC 1 cut(s) 1133
TfiI GAWTC 3 cut(s) 110, 162, 410
Tru1I TTAA 4 cut(s) 552, 809, 1005, 1295
Tru9I TTAA 4 cut(s) 552, 809, 1005, 1295
TscAI CASTG 4 cut(s) 312, 600, 966, 1002
TseFI GTSAC 2 cut(s) 404, 793
Tsp45I GTSAC 2 cut(s) 404, 793
TspDTI ATGAA 2 cut(s) 565, 958
TspGWI ACGGA 2 cut(s) 274, 835
TspRI CASTG 4 cut(s) 312, 600, 966, 1002
Van91I CCANNNNNTGG 1 cut(s) 182
VpaK11BI GGWCC 2 cut(s) 219, 626
XapI RAATTY 1 cut(s) 1299
XceI RCATGY 3 cut(s) 402, 584, 686
XcmI CCANNNNNNNNNTGG 1 cut(s) 271
XhoI CTCGAG 1 cut(s) 227
XspI CTAG 2 cut(s) 236, 635
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.