Rw3G017800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0011439
Physical Location & Seq
Reverse (-)
19580584 .. 19581120
537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G017800.1

Sequence Viewer

Length: 192 bp
ATGGTGGCGTGGTCGTATCCGCCGACGCGGAAGCAGCTTGTTGTGACGGCGTGCTGTTTCGTCTCCGGGATGGGACTGTTCGGCGTCGGAGCTCACCTGTCGCTGGCCAACGTGGGGCCACAGCAAGAACGGGTCAAGGCTCGCAGGGAGTTTGTCAAGGACCGCTTGAGAAAGCTTCTGGATGATGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

63

Amino Acids

7.06

Weight (kDa)

9.59

Isoelectric Point (pI)

36.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 28
AciI CCGC 3 cut(s) 20, 28, 163
AcoI YGGCCR 1 cut(s) 105
AcyI GRCGYC 1 cut(s) 84
AfiI CCNNNNNNNGG 2 cut(s) 103, 114
AluBI AGCT 3 cut(s) 37, 92, 175
AluI AGCT 3 cut(s) 37, 92, 175
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 1 cut(s) 67
AoxI GGCC 2 cut(s) 105, 116
ApeKI GCWGC 1 cut(s) 34
AspS9I GGNCC 2 cut(s) 116, 160
AsuC2I CCSGG 1 cut(s) 67
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 160
BalI TGGCCA 1 cut(s) 107
BanII GRGCYC 1 cut(s) 94
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 1 cut(s) 46
BccI CCATC 1 cut(s) 64
BceAI ACGGC 1 cut(s) 63
BciVI GTATCC 1 cut(s) 27
BcnI CCSGG 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 67
BfuI GTATCC 1 cut(s) 27
BisI GCNGC 1 cut(s) 35
BlsI GCNGC 1 cut(s) 36
Bme1390I CCNGG 1 cut(s) 67
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 2 cut(s) 116, 160
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 67
BpuEI CTTGAG 1 cut(s) 187
BpuMI CCSGG 1 cut(s) 67
BsaHI GRCGYC 1 cut(s) 84
Bsc4I CCNNNNNNNGG 2 cut(s) 103, 114
BseGI GGATG 2 cut(s) 75, 187
BseLI CCNNNNNNNGG 2 cut(s) 103, 114
BseXI GCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 28
BshFI GGCC 2 cut(s) 107, 118
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 1 cut(s) 66
BslFI GGGAC 1 cut(s) 87
BslI CCNNNNNNNGG 2 cut(s) 103, 114
BsmAI GTCTC 1 cut(s) 67
BsmBI CGTCTC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 87
BsnI GGCC 2 cut(s) 107, 118
Bsp1286I GDGCHC 1 cut(s) 94
BspACI CCGC 3 cut(s) 20, 28, 163
BspANI GGCC 2 cut(s) 107, 118
BspFNI CGCG 1 cut(s) 28
BspLI GGNNCC 1 cut(s) 117
BssNI GRCGYC 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 78
BstACI GRCGYC 1 cut(s) 84
BstC8I GCNNGC 3 cut(s) 52, 105, 142
BstF5I GGATG 2 cut(s) 75, 187
BstFNI CGCG 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 67
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstSCI CCNGG 1 cut(s) 65
BstUI CGCG 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 46
BsuI GTATCC 1 cut(s) 27
BsuRI GGCC 2 cut(s) 107, 118
BtsCI GGATG 2 cut(s) 75, 187
Cac8I GCNNGC 3 cut(s) 52, 105, 142
Cfr13I GGNCC 2 cut(s) 116, 160
CseI GACGC 2 cut(s) 34, 73
CviJI RGCY 6 cut(s) 37, 92, 107, 118, 140, 175
CviKI_1 RGCY 6 cut(s) 37, 92, 107, 118, 140, 175
EaeI YGGCCR 1 cut(s) 105
EciI GGCGGA 1 cut(s) 9
Ecl136II GAGCTC 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 94
Eco47I GGWCC 1 cut(s) 160
Eco53kI GAGCTC 1 cut(s) 92
EcoICRI GAGCTC 1 cut(s) 92
EcoT38I GRGCYC 1 cut(s) 94
Esp3I CGTCTC 1 cut(s) 67
FalI AAGNNNNNCTT 2 cut(s) 149, 181
FaqI GGGAC 1 cut(s) 87
Fnu4HI GCNGC 1 cut(s) 35
FokI GGATG 1 cut(s) 82
FriOI GRGCYC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 35
GluI GCNGC 1 cut(s) 35
HaeIII GGCC 2 cut(s) 107, 118
HapII CCGG 1 cut(s) 66
HgaI GACGC 2 cut(s) 34, 73
Hin1I GRCGYC 1 cut(s) 84
HindIII AAGCTT 1 cut(s) 173
HpaII CCGG 1 cut(s) 66
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 89
Hpy188III TCNNGA 1 cut(s) 179
Hpy99I CGWCG 2 cut(s) 28, 89
HpyCH4III ACNGT 1 cut(s) 78
HpyCH4IV ACGT 1 cut(s) 111
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpySE526I ACGT 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 84
LmnI GCTCC 1 cut(s) 89
LpnPI CCDG 5 cut(s) 79, 89, 110, 130, 164
Lsp1109I GCAGC 1 cut(s) 46
MaeII ACGT 1 cut(s) 111
MaeIII GTNAC 1 cut(s) 43
MhlI GDGCHC 1 cut(s) 94
MlsI TGGCCA 1 cut(s) 107
MluNI TGGCCA 1 cut(s) 107
MmeI TCCRAC 1 cut(s) 67
Mox20I TGGCCA 1 cut(s) 107
MscI TGGCCA 1 cut(s) 107
Msp20I TGGCCA 1 cut(s) 107
MspI CCGG 1 cut(s) 66
MspR9I CCNGG 1 cut(s) 67
MvnI CGCG 1 cut(s) 28
MwoI GCNNNNNNNGC 1 cut(s) 34
NciI CCSGG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PfoI TCCNGGA 1 cut(s) 65
PkrI GCNGC 1 cut(s) 36
Psp124BI GAGCTC 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 117
PspPI GGNCC 2 cut(s) 116, 160
SacI GAGCTC 1 cut(s) 94
SatI GCNGC 1 cut(s) 35
Sau96I GGNCC 2 cut(s) 116, 160
ScrFI CCNGG 1 cut(s) 67
SduI GDGCHC 1 cut(s) 94
SetI ASST 5 cut(s) 39, 94, 99, 114, 177
SinI GGWCC 1 cut(s) 160
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
SsiI CCGC 3 cut(s) 20, 28, 163
SstI GAGCTC 1 cut(s) 94
StyD4I CCNGG 1 cut(s) 65
TaaI ACNGT 1 cut(s) 78
TaiI ACGT 1 cut(s) 114
TseFI GTSAC 1 cut(s) 43
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 43
VpaK11BI GGWCC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.