Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G37170 |
| fragaria_vesca | FvH4_1g15050 FvH4_1g15080 |
| malus_domestica | MD15G1276800.v1.1 |
| prunus_persica | Prupe.7G139900_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0104091 RchiOBHm_Chr2g0104101 |
| rosa_laevigata | RLG00000017288 RLG00000017299 |
| rosa_multiflora | Rmu_ssc0000257.1_g000009 |
| rosa_rugosa | Rorug02G0119400 |
| rosa_samantha | Rh2BG176100 Rh2CG174500 Rh2CG174700 |
| rosa_wichuraiana | Rw2G013220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 731 |
| Acc36I | ACCTGC | 1 cut(s) | 1009 |
| AciI | CCGC | 6 cut(s) | 148, 558, 999, 1284, 1367, 2014 |
| AclWI | GGATC | 2 cut(s) | 24, 1377 |
| AcoI | YGGCCR | 1 cut(s) | 1408 |
| AcsI | RAATTY | 7 cut(s) | 21, 167, 1429, 1497, 1813, 1939, 1976 |
| AcuI | CTGAAG | 2 cut(s) | 666, 1199 |
| AfaI | GTAC | 3 cut(s) | 1031, 1246, 1291 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 492, 969, 1516 |
| AflIII | ACRYGT | 1 cut(s) | 1949 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1057 |
| AjnI | CCWGG | 3 cut(s) | 1008, 1669, 1912 |
| AleI | CACNNNNGTG | 1 cut(s) | 335 |
| Alw21I | GWGCWC | 2 cut(s) | 301, 673 |
| Alw26I | GTCTC | 1 cut(s) | 1716 |
| AlwI | GGATC | 2 cut(s) | 24, 1377 |
| Ama87I | CYCGRG | 2 cut(s) | 353, 1401 |
| AoxI | GGCC | 5 cut(s) | 136, 245, 590, 947, 1408 |
| ApeKI | GCWGC | 6 cut(s) | 277, 496, 677, 686, 1529, 1822 |
| ApoI | RAATTY | 7 cut(s) | 21, 167, 1429, 1497, 1813, 1939, 1976 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1799, 1831 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 61, 110, 219, 956 |
| AspLEI | GCGC | 2 cut(s) | 822, 989 |
| AspS9I | GGNCC | 3 cut(s) | 246, 319, 555 |
| AsuC2I | CCSGG | 2 cut(s) | 354, 355 |
| AsuHPI | GGTGA | 4 cut(s) | 515, 649, 850, 952 |
| AsuII | TTCGAA | 1 cut(s) | 1094 |
| AvaI | CYCGRG | 2 cut(s) | 353, 1401 |
| AvaII | GGWCC | 2 cut(s) | 319, 555 |
| BaeGI | GKGCMC | 2 cut(s) | 354, 1078 |
| BanII | GRGCYC | 1 cut(s) | 301 |
| BbsI | GAAGAC | 1 cut(s) | 278 |
| Bbv12I | GWGCWC | 2 cut(s) | 301, 673 |
| BbvI | GCAGC | 6 cut(s) | 289, 483, 664, 698, 1516, 1809 |
| BccI | CCATC | 4 cut(s) | 698, 829, 884, 1152 |
| BceAI | ACGGC | 1 cut(s) | 151 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 208, 242, 256, 290 |
| BciT130I | CCWGG | 3 cut(s) | 1010, 1671, 1914 |
| BclI | TGATCA | 1 cut(s) | 1255 |
| BcnI | CCSGG | 2 cut(s) | 354, 355 |
| BcoDI | GTCTC | 1 cut(s) | 1716 |
| BfaI | CTAG | 4 cut(s) | 510, 666, 674, 1583 |
| BfmI | CTRYAG | 1 cut(s) | 1530 |
| BfuAI | ACCTGC | 1 cut(s) | 1009 |
| BisI | GCNGC | 8 cut(s) | 148, 278, 497, 678, 687, 999, 1530, 1823 |
| BlpI | GCTNAGC | 1 cut(s) | 816 |
| BlsI | GCNGC | 8 cut(s) | 149, 279, 498, 679, 688, 1000, 1531, 1824 |
| Bme1390I | CCNGG | 5 cut(s) | 354, 355, 1010, 1671, 1914 |
| Bme18I | GGWCC | 2 cut(s) | 319, 555 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1057 |
| BmeT110I | CYCGRG | 2 cut(s) | 353, 1401 |
| BmgT120I | GGNCC | 3 cut(s) | 246, 319, 555 |
| BmiI | GGNNCC | 1 cut(s) | 2030 |
| BmrFI | CCNGG | 5 cut(s) | 354, 355, 1010, 1671, 1914 |
| BmrI | ACTGGG | 1 cut(s) | 750 |
| BmsI | GCATC | 5 cut(s) | 403, 612, 1076, 1128, 1905 |
| BmuI | ACTGGG | 1 cut(s) | 750 |
| BpiI | GAAGAC | 1 cut(s) | 278 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 816 |
| Bpu14I | TTCGAA | 1 cut(s) | 1094 |
| BpuEI | CTTGAG | 1 cut(s) | 1496 |
| BpuMI | CCSGG | 2 cut(s) | 354, 355 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1688, 2022 |
| BsaJI | CCNNGG | 2 cut(s) | 353, 1009 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 492, 969, 1516 |
| Bse1I | ACTGG | 2 cut(s) | 745, 1606 |
| Bse3DI | GCAATG | 1 cut(s) | 567 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1688, 2022 |
| BseBI | CCWGG | 3 cut(s) | 1010, 1671, 1914 |
| BseDI | CCNNGG | 2 cut(s) | 353, 1009 |
| BseJI | GATNNNNATC | 2 cut(s) | 1688, 2022 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 492, 969, 1516 |
| BseMI | GCAATG | 1 cut(s) | 567 |
| BseMII | CTCAG | 8 cut(s) | 432, 525, 936, 993, 1202, 1416, 1548, 1727 |
| BseNI | ACTGG | 2 cut(s) | 745, 1606 |
| BseRI | GAGGAG | 2 cut(s) | 1850, 1853 |
| BseSI | GKGCMC | 2 cut(s) | 354, 1078 |
| BseXI | GCAGC | 6 cut(s) | 289, 483, 664, 698, 1516, 1809 |
| BsgI | GTGCAG | 1 cut(s) | 326 |
| BshFI | GGCC | 5 cut(s) | 138, 247, 592, 949, 1410 |
| BsiHKAI | GWGCWC | 2 cut(s) | 301, 673 |
| BsiHKCI | CYCGRG | 2 cut(s) | 353, 1401 |
| BsiSI | CCGG | 2 cut(s) | 354, 1457 |
| BslFI | GGGAC | 2 cut(s) | 1714, 1787 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 492, 969, 1516 |
| BsmAI | GTCTC | 1 cut(s) | 1716 |
| BsmFI | GGGAC | 2 cut(s) | 1714, 1787 |
| BsmI | GAATGC | 2 cut(s) | 985, 1120 |
| BsnI | GGCC | 5 cut(s) | 138, 247, 592, 949, 1410 |
| BsoBI | CYCGRG | 2 cut(s) | 353, 1401 |
| Bsp119I | TTCGAA | 1 cut(s) | 1094 |
| Bsp1286I | GDGCHC | 4 cut(s) | 301, 354, 673, 1078 |
| Bsp143I | GATC | 5 cut(s) | 29, 1173, 1255, 1369, 1689 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 816 |
| BspACI | CCGC | 6 cut(s) | 148, 558, 999, 1284, 1367, 2014 |
| BspANI | GGCC | 5 cut(s) | 138, 247, 592, 949, 1410 |
| BspCNI | CTCAG | 8 cut(s) | 433, 526, 935, 994, 1201, 1417, 1549, 1728 |
| BspLI | GGNNCC | 1 cut(s) | 2030 |
| BspMAI | CTGCAG | 1 cut(s) | 1534 |
| BspMI | ACCTGC | 1 cut(s) | 1009 |
| BspPI | GGATC | 2 cut(s) | 24, 1377 |
| BspQI | GCTCTTC | 1 cut(s) | 1218 |
| BspT104I | TTCGAA | 1 cut(s) | 1094 |
| BsrDI | GCAATG | 1 cut(s) | 567 |
| BsrI | ACTGG | 2 cut(s) | 745, 1606 |
| BssECI | CCNNGG | 2 cut(s) | 353, 1009 |
| BssMI | GATC | 5 cut(s) | 29, 1173, 1255, 1369, 1689 |
| Bst2UI | CCWGG | 3 cut(s) | 1010, 1671, 1914 |
| Bst4CI | ACNGT | 4 cut(s) | 519, 661, 1111, 1871 |
| Bst6I | CTCTTC | 4 cut(s) | 890, 897, 1218, 1413 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1073, 1364 |
| BstBI | TTCGAA | 1 cut(s) | 1094 |
| BstC8I | GCNNGC | 8 cut(s) | 197, 985, 1016, 1300, 1408, 1518, 1527, 1881 |
| BstHHI | GCGC | 2 cut(s) | 822, 989 |
| BstKTI | GATC | 5 cut(s) | 32, 1176, 1258, 1372, 1692 |
| BstMAI | GTCTC | 1 cut(s) | 1716 |
| BstMBI | GATC | 5 cut(s) | 29, 1173, 1255, 1369, 1689 |
| BstNI | CCWGG | 3 cut(s) | 1010, 1671, 1914 |
| BstNSI | RCATGY | 3 cut(s) | 1612, 1709, 1953 |
| BstSCI | CCNGG | 5 cut(s) | 352, 353, 1008, 1669, 1912 |
| BstSFI | CTRYAG | 1 cut(s) | 1530 |
| BstSLI | GKGCMC | 2 cut(s) | 354, 1078 |
| BstV1I | GCAGC | 6 cut(s) | 289, 483, 664, 698, 1516, 1809 |
| BstV2I | GAAGAC | 1 cut(s) | 278 |
| BstX2I | RGATCY | 1 cut(s) | 29 |
| BstYI | RGATCY | 1 cut(s) | 29 |
| BsuRI | GGCC | 5 cut(s) | 138, 247, 592, 949, 1410 |
| BtsIMutI | CAGTG | 2 cut(s) | 1116, 1876 |
| BveI | ACCTGC | 1 cut(s) | 1009 |
| Cac8I | GCNNGC | 8 cut(s) | 197, 985, 1016, 1300, 1408, 1518, 1527, 1881 |
| CfoI | GCGC | 2 cut(s) | 822, 989 |
| Cfr13I | GGNCC | 3 cut(s) | 246, 319, 555 |
| Cfr9I | CCCGGG | 1 cut(s) | 353 |
| CsiI | ACCWGGT | 1 cut(s) | 1669 |
| Csp6I | GTAC | 3 cut(s) | 1030, 1245, 1290 |
| CviQI | GTAC | 3 cut(s) | 1030, 1245, 1290 |
| DpnI | GATC | 5 cut(s) | 31, 1175, 1257, 1371, 1691 |
| DpnII | GATC | 5 cut(s) | 29, 1173, 1255, 1369, 1689 |
| DraI | TTTAAA | 1 cut(s) | 1132 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1057 |
| EaeI | YGGCCR | 1 cut(s) | 1408 |
| Eam1104I | CTCTTC | 4 cut(s) | 890, 897, 1218, 1413 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1057 |
| EarI | CTCTTC | 4 cut(s) | 890, 897, 1218, 1413 |
| Ecl136II | GAGCTC | 1 cut(s) | 299 |
| Eco147I | AGGCCT | 1 cut(s) | 592 |
| Eco24I | GRGCYC | 1 cut(s) | 301 |
| Eco32I | GATATC | 1 cut(s) | 567 |
| Eco47I | GGWCC | 2 cut(s) | 319, 555 |
| Eco53kI | GAGCTC | 1 cut(s) | 299 |
| Eco57I | CTGAAG | 2 cut(s) | 666, 1199 |
| Eco88I | CYCGRG | 2 cut(s) | 353, 1401 |
| EcoICRI | GAGCTC | 1 cut(s) | 299 |
| EcoO109I | RGGNCCY | 1 cut(s) | 246 |
| EcoRI | GAATTC | 1 cut(s) | 1497 |
| EcoRII | CCWGG | 3 cut(s) | 1008, 1669, 1912 |
| EcoRV | GATATC | 1 cut(s) | 567 |
| EcoT38I | GRGCYC | 1 cut(s) | 301 |
| FaqI | GGGAC | 2 cut(s) | 1714, 1787 |
| FauI | CCCGC | 1 cut(s) | 2007 |
| FauNDI | CATATG | 1 cut(s) | 1086 |
| FbaI | TGATCA | 1 cut(s) | 1255 |
| Fnu4HI | GCNGC | 8 cut(s) | 148, 278, 497, 678, 687, 999, 1530, 1823 |
| FriOI | GRGCYC | 1 cut(s) | 301 |
| Fsp4HI | GCNGC | 8 cut(s) | 148, 278, 497, 678, 687, 999, 1530, 1823 |
| FspBI | CTAG | 4 cut(s) | 510, 666, 674, 1583 |
| GlaI | GCGC | 2 cut(s) | 821, 988 |
| GluI | GCNGC | 8 cut(s) | 148, 278, 497, 678, 687, 999, 1530, 1823 |
| HaeIII | GGCC | 5 cut(s) | 138, 247, 592, 949, 1410 |
| HapII | CCGG | 2 cut(s) | 354, 1457 |
| HhaI | GCGC | 2 cut(s) | 822, 989 |
| Hin6I | GCGC | 2 cut(s) | 820, 987 |
| HinP1I | GCGC | 2 cut(s) | 820, 987 |
| HincII | GTYRAC | 1 cut(s) | 1199 |
| HindII | GTYRAC | 1 cut(s) | 1199 |
| HindIII | AAGCTT | 1 cut(s) | 1877 |
| HinfI | GANTC | 8 cut(s) | 13, 220, 403, 718, 749, 841, 1561, 2018 |
| HpaII | CCGG | 2 cut(s) | 354, 1457 |
| HphI | GGTGA | 4 cut(s) | 515, 649, 850, 952 |
| Hpy166II | GTNNAC | 4 cut(s) | 657, 861, 960, 1199 |
| Hpy188I | TCNGA | 6 cut(s) | 442, 754, 781, 925, 1191, 1634 |
| Hpy188III | TCNNGA | 5 cut(s) | 694, 845, 1148, 1693, 2063 |
| Hpy8I | GTNNAC | 4 cut(s) | 657, 861, 960, 1199 |
| Hpy99I | CGWCG | 1 cut(s) | 1181 |
| HpyAV | CCTTC | 5 cut(s) | 415, 706, 1621, 1780, 1787 |
| HpyCH4III | ACNGT | 4 cut(s) | 519, 661, 1111, 1871 |
| HspAI | GCGC | 2 cut(s) | 820, 987 |
| Ksp22I | TGATCA | 1 cut(s) | 1255 |
| Kzo9I | GATC | 5 cut(s) | 29, 1173, 1255, 1369, 1689 |
| LguI | GCTCTTC | 1 cut(s) | 1218 |
| LmnI | GCTCC | 1 cut(s) | 1840 |
| Lsp1109I | GCAGC | 6 cut(s) | 289, 483, 664, 698, 1516, 1809 |
| LweI | GCATC | 5 cut(s) | 403, 612, 1076, 1128, 1905 |
| MabI | ACCWGGT | 1 cut(s) | 1669 |
| MaeI | CTAG | 4 cut(s) | 510, 666, 674, 1583 |
| MaeIII | GTNAC | 3 cut(s) | 1230, 1621, 2063 |
| MalI | GATC | 5 cut(s) | 31, 1175, 1257, 1371, 1691 |
| MboI | GATC | 5 cut(s) | 29, 1173, 1255, 1369, 1689 |
| MboII | GAAGA | 8 cut(s) | 63, 106, 278, 907, 914, 1205, 1430, 1802 |
| MflI | RGATCY | 1 cut(s) | 29 |
| MhlI | GDGCHC | 4 cut(s) | 301, 354, 673, 1078 |
| MlyI | GAGTC | 3 cut(s) | 7, 412, 743 |
| MmeI | TCCRAC | 3 cut(s) | 147, 726, 1661 |
| MroXI | GAANNNNTTC | 4 cut(s) | 61, 110, 219, 956 |
| MslI | CAYNNNNRTG | 2 cut(s) | 335, 1149 |
| MspA1I | CMGCKG | 1 cut(s) | 1001 |
| MspI | CCGG | 2 cut(s) | 354, 1457 |
| MspR9I | CCNGG | 5 cut(s) | 354, 355, 1010, 1671, 1914 |
| Mva1269I | GAATGC | 2 cut(s) | 985, 1120 |
| MvaI | CCWGG | 3 cut(s) | 1010, 1671, 1914 |
| NciI | CCSGG | 2 cut(s) | 354, 355 |
| NdeI | CATATG | 1 cut(s) | 1086 |
| NdeII | GATC | 5 cut(s) | 29, 1173, 1255, 1369, 1689 |
| NlaIV | GGNNCC | 1 cut(s) | 2030 |
| NmuCI | GTSAC | 1 cut(s) | 2063 |
| NspI | RCATGY | 3 cut(s) | 1612, 1709, 1953 |
| NspV | TTCGAA | 1 cut(s) | 1094 |
| OliI | CACNNNNGTG | 1 cut(s) | 335 |
| PaeR7I | CTCGAG | 1 cut(s) | 1401 |
| PceI | AGGCCT | 1 cut(s) | 592 |
| PciI | ACATGT | 1 cut(s) | 1949 |
| PciSI | GCTCTTC | 1 cut(s) | 1218 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1408 |
| PctI | GAATGC | 2 cut(s) | 985, 1120 |
| PdmI | GAANNNNTTC | 4 cut(s) | 61, 110, 219, 956 |
| PfeI | GAWTC | 5 cut(s) | 220, 718, 841, 1561, 2018 |
| PkrI | GCNGC | 8 cut(s) | 149, 279, 498, 679, 688, 1000, 1531, 1824 |
| PleI | GAGTC | 3 cut(s) | 7, 411, 743 |
| PpsI | GAGTC | 3 cut(s) | 7, 411, 743 |
| PscI | ACATGT | 1 cut(s) | 1949 |
| PsiI | TTATAA | 1 cut(s) | 731 |
| Psp124BI | GAGCTC | 1 cut(s) | 301 |
| Psp6I | CCWGG | 3 cut(s) | 1008, 1669, 1912 |
| PspGI | CCWGG | 3 cut(s) | 1008, 1669, 1912 |
| PspN4I | GGNNCC | 1 cut(s) | 2030 |
| PspPI | GGNCC | 3 cut(s) | 246, 319, 555 |
| PspXI | VCTCGAGB | 1 cut(s) | 1401 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1847, 1879 |
| PstI | CTGCAG | 1 cut(s) | 1534 |
| PsuI | RGATCY | 1 cut(s) | 29 |
| RsaI | GTAC | 3 cut(s) | 1031, 1246, 1291 |
| RsaNI | GTAC | 3 cut(s) | 1030, 1245, 1290 |
| RseI | CAYNNNNRTG | 2 cut(s) | 335, 1149 |
| SacI | GAGCTC | 1 cut(s) | 301 |
| SapI | GCTCTTC | 1 cut(s) | 1218 |
| SatI | GCNGC | 8 cut(s) | 148, 278, 497, 678, 687, 999, 1530, 1823 |
| Sau3AI | GATC | 5 cut(s) | 29, 1173, 1255, 1369, 1689 |
| Sau96I | GGNCC | 3 cut(s) | 246, 319, 555 |
| SchI | GAGTC | 3 cut(s) | 7, 412, 743 |
| ScrFI | CCNGG | 5 cut(s) | 354, 355, 1010, 1671, 1914 |
| SduI | GDGCHC | 4 cut(s) | 301, 354, 673, 1078 |
| SexAI | ACCWGGT | 1 cut(s) | 1669 |
| SfaNI | GCATC | 5 cut(s) | 403, 612, 1076, 1128, 1905 |
| SfcI | CTRYAG | 1 cut(s) | 1530 |
| Sfr274I | CTCGAG | 1 cut(s) | 1401 |
| SfuI | TTCGAA | 1 cut(s) | 1094 |
| SinI | GGWCC | 2 cut(s) | 319, 555 |
| SlaI | CTCGAG | 1 cut(s) | 1401 |
| SmaI | CCCGGG | 1 cut(s) | 355 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 335, 1149 |
| SmlI | CTYRAG | 2 cut(s) | 1401, 1511 |
| SmoI | CTYRAG | 2 cut(s) | 1401, 1511 |
| SrfI | GCCCGGGC | 1 cut(s) | 355 |
| SseBI | AGGCCT | 1 cut(s) | 592 |
| SsiI | CCGC | 6 cut(s) | 148, 558, 999, 1284, 1367, 2014 |
| SspI | AATATT | 1 cut(s) | 1325 |
| SspMI | CTAG | 4 cut(s) | 510, 666, 674, 1583 |
| SstI | GAGCTC | 1 cut(s) | 301 |
| StuI | AGGCCT | 1 cut(s) | 592 |
| StyD4I | CCNGG | 5 cut(s) | 352, 353, 1008, 1669, 1912 |
| TaaI | ACNGT | 4 cut(s) | 519, 661, 1111, 1871 |
| TaqI | TCGA | 5 cut(s) | 266, 844, 1094, 1402, 1495 |
| TatI | WGTACW | 1 cut(s) | 1289 |
| TauI | GCSGC | 2 cut(s) | 150, 1001 |
| TfiI | GAWTC | 5 cut(s) | 220, 718, 841, 1561, 2018 |
| TscAI | CASTG | 2 cut(s) | 1116, 1876 |
| TseFI | GTSAC | 1 cut(s) | 2063 |
| TseI | GCWGC | 6 cut(s) | 277, 496, 677, 686, 1529, 1822 |
| Tsp45I | GTSAC | 1 cut(s) | 2063 |
| TspGWI | ACGGA | 2 cut(s) | 177, 1054 |
| TspMI | CCCGGG | 1 cut(s) | 353 |
| TspRI | CASTG | 2 cut(s) | 1116, 1876 |
| VpaK11BI | GGWCC | 2 cut(s) | 319, 555 |
| XapI | RAATTY | 7 cut(s) | 21, 167, 1429, 1497, 1813, 1939, 1976 |
| XceI | RCATGY | 3 cut(s) | 1612, 1709, 1953 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1677 |
| XhoI | CTCGAG | 1 cut(s) | 1401 |
| XmaI | CCCGGG | 1 cut(s) | 353 |
| XmnI | GAANNNNTTC | 4 cut(s) | 61, 110, 219, 956 |
| XspI | CTAG | 4 cut(s) | 510, 666, 674, 1583 |