Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0016202

Physical Location & Seq

Genomic Coordinates Reverse (-)

15771242 .. 15772583

Gene Structure 1342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG174500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGTATGGGAAATGTGGGAGTATAGAGGAAGCTAGGCGCATTTTCGATAAGATGGTGAATCGAGATGTTGTGACATGGACGGCGATGATTGGGAGATACTTTGAGGATGGGAAGAAGGACGAGGGACTTGCCTTGTTTTCGGAGTTGATGAAATCCGGGATTAGACCTAATGAGTTCACGTTTGCAGGGGTTTTGAATGCCTGTGCTGATCATGCTACTGAGAACCTAGGCAAGCAGGTACAAGGATACATGACACGGATAGGATTCGATCCCTTTTCGTTTGCAGCAAGTGCCCTTGTTCATATGTATTCAAAGTGTGGAAACACTGCTAATGCGAATAAGGTGTTGAAAGGGATGCCCGGTCCAGATTTGGTTTCATGGACTTCCCTCATTGTTGGATATGCTCAGAGTGGTCAAGCTGAGGAGGCTCTTCAGTTGTTTGAGTCACTACTTAAATCAGGTACTCGGCCTGATCACGTAACATTTGTAGGTGTTCTTTCAGCTTGTACTCATGCTGGATTAGTCGATAAAGGACTTGAGTATTTCTATTCTATTAAGGCAAAACATGGGTTAAAACATACTGCGGACCACTATGCATGCGTAGTTGATTTGTTAGCCCGAGCTGGCCGATTTGATGAAGCCGAGAATATTATAAGTGAAATGCCCATGAAGCCTAGTAAGTTCTTATGGGCCTCCTTAATTGGTGGTTGTAGAATTCATGGAAACGTCAAGCTGGCAAAGCGAGCTGCAGAGGCATTGTTTGAGATAGAACCTGAGAATCCTGCTACTTATGTTACTCTGGCCAACATTTACGCTACCGCTGGCATGTGGAGTGAAGTAACAAAGGTTAGAAAGGAAATGGATGAAAGTGGGATAATAAAGAAACCAGGTCTGAGTTGGATTGAGATCAAGAGAGAGATGCATGTTTTCTTAGTTGGAGATCAGTCTCACCCCAGATACAATGAAATAGATCACTTTTTGAGTGAAATTTCGAAGAGGATGAAAGAAGAAGGGTATGTTCCTGACACGAACTTTGTGCTGCATGATGTTGAGGAGGAGCAGAAAGAGCAGAACCTCTCGTACCACAGTGAGAAGCTTGCAGTTGCATTCGGCATTGTTTCTACTCCACCAGGAACTGCAATCAAGGTTTTTAAGAATTTAAGAACATGTGTAGATTGTCATAATGCAATTAAATTTATTTCCAAGATTTCTAACAGAAAAATAGTAGTGCGGGATTCAAATCGATTCCATTGGTTTGAGGATGGGAAGTGTTCATGTCTCGATTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR

Protein Analysis

430

Amino Acids

48.21

Weight (kDa)

6.74

Isoelectric Point (pI)

40.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	21 - 69	8.4e-12	PPR repeat family
PPR_2	PF13041	122 - 169	1e-10	PPR repeat family
PPR	PF01535	125 - 154	5.5e-07	PPR repeat
E_motif	PF20431	240 - 302	6.3e-22	E motif
DYW_deaminase	PF14432	338 - 430	2.1e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016202)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G37170
fragaria_vesca	FvH4_1g15050 FvH4_1g15080
malus_domestica	MD15G1276800.v1.1
prunus_persica	Prupe.7G139900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0104091 RchiOBHm_Chr2g0104101
rosa_laevigata	RLG00000017288 RLG00000017299
rosa_multiflora	Rmu_ssc0000257.1_g000009
rosa_rugosa	Rorug02G0119400
rosa_samantha	Rh2BG176100 Rh2CG174500 Rh2CG174700
rosa_wichuraiana	Rw2G013220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	653
Acc36I	ACCTGC	1 cut(s)	226
AciI	CCGC	3 cut(s)	584, 819, 1231
AclWI	GGATC	1 cut(s)	263
AcoI	YGGCCR	2 cut(s)	625, 801
AcsI	RAATTY	4 cut(s)	714, 987, 1156, 1193
AcuI	CTGAAG	1 cut(s)	416
AfaI	GTAC	4 cut(s)	240, 463, 508, 1082
AflIII	ACRYGT	1 cut(s)	1166
AgsI	TTSAA	4 cut(s)	196, 312, 349, 1239
AjnI	CCWGG	2 cut(s)	886, 1129
AluBI	AGCT	7 cut(s)	32, 419, 503, 623, 733, 746, 1096
AluI	AGCT	7 cut(s)	32, 419, 503, 623, 733, 746, 1096
Alw26I	GTCTC	2 cut(s)	951, 1283
AlwI	GGATC	1 cut(s)	263
AlwNI	CAGNNNCTG	1 cut(s)	1136
Ama87I	CYCGRG	1 cut(s)	618
AoxI	GGCC	4 cut(s)	467, 625, 690, 801
ApeKI	GCWGC	3 cut(s)	284, 746, 1039
ApoI	RAATTY	4 cut(s)	714, 987, 1156, 1193
ArsI	GACNNNNNNTTYG	2 cut(s)	1016, 1048
AspA2I	CCTAGG	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	39
AspS9I	GGNCC	3 cut(s)	362, 586, 690
AsuC2I	CCSGG	2 cut(s)	157, 360
AsuHPI	GGTGA	2 cut(s)	67, 941
AsuII	TTCGAA	1 cut(s)	992
AvaI	CYCGRG	1 cut(s)	618
AvaII	GGWCC	2 cut(s)	362, 586
AvrII	CCTAGG	1 cut(s)	226
BaeGI	GKGCMC	1 cut(s)	295
BalI	TGGCCA	1 cut(s)	803
BbvCI	CCTCAGC	1 cut(s)	420
BbvI	GCAGC	3 cut(s)	296, 733, 1026
BccI	CCATC	3 cut(s)	46, 101, 1256
BceAI	ACGGC	1 cut(s)	96
BcgI	CGANNNNNNTGC	4 cut(s)	110, 144, 1018, 1052
BciT130I	CCWGG	2 cut(s)	888, 1131
BciVI	GTATCC	1 cut(s)	239
BclI	TGATCA	2 cut(s)	208, 472
BcnI	CCSGG	2 cut(s)	157, 360
BcoDI	GTCTC	2 cut(s)	951, 1283
BfaI	CTAG	3 cut(s)	33, 227, 675
BfmI	CTRYAG	1 cut(s)	747
BfuAI	ACCTGC	1 cut(s)	226
BfuI	GTATCC	1 cut(s)	239
BisI	GCNGC	3 cut(s)	285, 747, 1040
BlnI	CCTAGG	1 cut(s)	226
BlsI	GCNGC	3 cut(s)	286, 748, 1041
Bme1390I	CCNGG	4 cut(s)	157, 360, 888, 1131
Bme18I	GGWCC	2 cut(s)	362, 586
BmeT110I	CYCGRG	1 cut(s)	618
BmgT120I	GGNCC	3 cut(s)	362, 586, 690
BmrFI	CCNGG	4 cut(s)	157, 360, 888, 1131
BmsI	GCATC	2 cut(s)	345, 909
Bpu10I	CCTNAGC	1 cut(s)	420
Bpu14I	TTCGAA	1 cut(s)	992
BpuEI	CTTGAG	1 cut(s)	557
BpuMI	CCSGG	2 cut(s)	157, 360
Bsa29I	ATCGAT	1 cut(s)	1243
BsaAI	YACGTR	1 cut(s)	478
BsaBI	GATNNNNATC	2 cut(s)	905, 1239
BsaJI	CCNNGG	1 cut(s)	226
Bse8I	GATNNNNATC	2 cut(s)	905, 1239
BseBI	CCWGG	2 cut(s)	888, 1131
BseCI	ATCGAT	1 cut(s)	1243
BseDI	CCNNGG	1 cut(s)	226
BseGI	GGATG	5 cut(s)	112, 360, 868, 1005, 1267
BseJI	GATNNNNATC	2 cut(s)	905, 1239
BseMII	CTCAG	5 cut(s)	210, 411, 419, 765, 884
BseRI	GAGGAG	3 cut(s)	437, 1067, 1070
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	3 cut(s)	296, 733, 1026
BshFI	GGCC	4 cut(s)	469, 627, 692, 803
BshVI	ATCGAT	1 cut(s)	1243
BsiHKCI	CYCGRG	1 cut(s)	618
BsiSI	CCGG	2 cut(s)	156, 360
BslFI	GGGAC	1 cut(s)	138
BsmAI	GTCTC	2 cut(s)	951, 1283
BsmFI	GGGAC	1 cut(s)	138
BsmI	GAATGC	2 cut(s)	202, 1106
BsnI	GGCC	4 cut(s)	469, 627, 692, 803
BsoBI	CYCGRG	1 cut(s)	618
Bsp119I	TTCGAA	1 cut(s)	992
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp143I	GATC	6 cut(s)	208, 268, 472, 906, 940, 970
BspACI	CCGC	3 cut(s)	584, 819, 1231
BspANI	GGCC	4 cut(s)	469, 627, 692, 803
BspCNI	CTCAG	5 cut(s)	211, 412, 418, 766, 885
BspDI	ATCGAT	1 cut(s)	1243
BspMAI	CTGCAG	1 cut(s)	751
BspMI	ACCTGC	1 cut(s)	226
BspPI	GGATC	1 cut(s)	263
BspQI	GCTCTTC	1 cut(s)	435
BspT104I	TTCGAA	1 cut(s)	992
BssECI	CCNNGG	1 cut(s)	226
BssMI	GATC	6 cut(s)	208, 268, 472, 906, 940, 970
BssT1I	CCWWGG	1 cut(s)	226
Bst2UI	CCWGG	2 cut(s)	888, 1131
Bst4CI	ACNGT	1 cut(s)	1088
Bst6I	CTCTTC	2 cut(s)	435, 989
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstBAI	YACGTR	1 cut(s)	478
BstBI	TTCGAA	1 cut(s)	992
BstC8I	GCNNGC	7 cut(s)	233, 598, 625, 735, 744, 823, 1098
BstDEI	CTNAG	6 cut(s)	219, 405, 420, 774, 893, 931
BstF5I	GGATG	5 cut(s)	112, 360, 868, 1005, 1267
BstHHI	GCGC	1 cut(s)	39
BstKTI	GATC	6 cut(s)	211, 271, 475, 909, 943, 973
BstMAI	GTCTC	2 cut(s)	951, 1283
BstMBI	GATC	6 cut(s)	208, 268, 472, 906, 940, 970
BstMWI	GCNNNNNNNGC	8 cut(s)	212, 290, 425, 670, 739, 743, 752, 1066
BstNI	CCWGG	2 cut(s)	888, 1131
BstNSI	RCATGY	4 cut(s)	600, 829, 926, 1170
BstSCI	CCNGG	4 cut(s)	155, 358, 886, 1129
BstSFI	CTRYAG	1 cut(s)	747
BstSLI	GKGCMC	1 cut(s)	295
BstV1I	GCAGC	3 cut(s)	296, 733, 1026
Bsu15I	ATCGAT	1 cut(s)	1243
BsuI	GTATCC	1 cut(s)	239
BsuRI	GGCC	4 cut(s)	469, 627, 692, 803
BsuTUI	ATCGAT	1 cut(s)	1243
BtgZI	GCGATG	1 cut(s)	98
BtsCI	GGATG	5 cut(s)	112, 360, 868, 1005, 1267
BtsI	GCAGTG	1 cut(s)	324
BtsIMutI	CAGTG	2 cut(s)	324, 1093
BveI	ACCTGC	1 cut(s)	226
Cac8I	GCNNGC	7 cut(s)	233, 598, 625, 735, 744, 823, 1098
CaiI	CAGNNNCTG	1 cut(s)	1136
CfoI	GCGC	1 cut(s)	39
Cfr13I	GGNCC	3 cut(s)	362, 586, 690
ClaI	ATCGAT	1 cut(s)	1243
CsiI	ACCWGGT	1 cut(s)	886
Csp6I	GTAC	4 cut(s)	239, 462, 507, 1081
CviQI	GTAC	4 cut(s)	239, 462, 507, 1081
DdeI	CTNAG	6 cut(s)	219, 405, 420, 774, 893, 931
DpnI	GATC	6 cut(s)	210, 270, 474, 908, 942, 972
DpnII	GATC	6 cut(s)	208, 268, 472, 906, 940, 970
EaeI	YGGCCR	2 cut(s)	625, 801
Eam1104I	CTCTTC	2 cut(s)	435, 989
EarI	CTCTTC	2 cut(s)	435, 989
Eco130I	CCWWGG	1 cut(s)	226
Eco47I	GGWCC	2 cut(s)	362, 586
Eco57I	CTGAAG	1 cut(s)	416
Eco88I	CYCGRG	1 cut(s)	618
EcoRI	GAATTC	1 cut(s)	714
EcoRII	CCWGG	2 cut(s)	886, 1129
EcoT14I	CCWWGG	1 cut(s)	226
EcoT22I	ATGCAT	2 cut(s)	598, 924
ErhI	CCWWGG	1 cut(s)	226
FaqI	GGGAC	1 cut(s)	138
FauI	CCCGC	1 cut(s)	1224
FauNDI	CATATG	1 cut(s)	303
FbaI	TGATCA	2 cut(s)	208, 472
Fnu4HI	GCNGC	3 cut(s)	285, 747, 1040
FokI	GGATG	5 cut(s)	119, 367, 875, 1012, 1274
Fsp4HI	GCNGC	3 cut(s)	285, 747, 1040
FspBI	CTAG	3 cut(s)	33, 227, 675
GlaI	GCGC	1 cut(s)	38
GluI	GCNGC	3 cut(s)	285, 747, 1040
HaeIII	GGCC	4 cut(s)	469, 627, 692, 803
HapII	CCGG	2 cut(s)	156, 360
HhaI	GCGC	1 cut(s)	39
Hin6I	GCGC	1 cut(s)	37
HinP1I	GCGC	1 cut(s)	37
HindIII	AAGCTT	1 cut(s)	1094
HinfI	GANTC	6 cut(s)	58, 264, 443, 778, 1235, 1245
HpaII	CCGG	2 cut(s)	156, 360
HphI	GGTGA	2 cut(s)	67, 941
Hpy166II	GTNNAC	1 cut(s)	177
Hpy188I	TCNGA	3 cut(s)	142, 408, 894
Hpy188III	TCNNGA	5 cut(s)	62, 365, 910, 1022, 1280
Hpy8I	GTNNAC	1 cut(s)	177
HpyAV	CCTTC	2 cut(s)	109, 1004
HpyCH4III	ACNGT	1 cut(s)	1088
HpyCH4IV	ACGT	3 cut(s)	179, 477, 726
HpyF10VI	GCNNNNNNNGC	8 cut(s)	212, 290, 425, 670, 739, 743, 752, 1066
HpyF3I	CTNAG	6 cut(s)	219, 405, 420, 774, 893, 931
HpySE526I	ACGT	3 cut(s)	179, 477, 726
HspAI	GCGC	1 cut(s)	37
Ksp22I	TGATCA	2 cut(s)	208, 472
Kzo9I	GATC	6 cut(s)	208, 268, 472, 906, 940, 970
LguI	GCTCTTC	1 cut(s)	435
LmnI	GCTCC	1 cut(s)	1057
Lsp1109I	GCAGC	3 cut(s)	296, 733, 1026
LweI	GCATC	2 cut(s)	345, 909
MabI	ACCWGGT	1 cut(s)	886
MaeI	CTAG	3 cut(s)	33, 227, 675
MaeII	ACGT	3 cut(s)	179, 477, 726
MaeIII	GTNAC	5 cut(s)	70, 444, 478, 793, 838
MalI	GATC	6 cut(s)	210, 270, 474, 908, 942, 972
MboI	GATC	6 cut(s)	208, 268, 472, 906, 940, 970
MboII	GAAGA	4 cut(s)	124, 422, 1006, 1019
MhlI	GDGCHC	1 cut(s)	295
MlsI	TGGCCA	1 cut(s)	803
MluCI	AATT	6 cut(s)	699, 714, 987, 1156, 1188, 1193
MluNI	TGGCCA	1 cut(s)	803
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	3 cut(s)	376, 878, 916
Mox20I	TGGCCA	1 cut(s)	803
Mph1103I	ATGCAT	2 cut(s)	598, 924
MscI	TGGCCA	1 cut(s)	803
MseI	TTAA	7 cut(s)	453, 555, 572, 698, 1152, 1160, 1191
Msp20I	TGGCCA	1 cut(s)	803
MspA1I	CMGCKG	1 cut(s)	821
MspI	CCGG	2 cut(s)	156, 360
MspR9I	CCNGG	4 cut(s)	157, 360, 888, 1131
Mva1269I	GAATGC	2 cut(s)	202, 1106
MvaI	CCWGG	2 cut(s)	888, 1131
MwoI	GCNNNNNNNGC	8 cut(s)	212, 290, 425, 670, 739, 743, 752, 1066
NciI	CCSGG	2 cut(s)	157, 360
NdeI	CATATG	1 cut(s)	303
NdeII	GATC	6 cut(s)	208, 268, 472, 906, 940, 970
NmeAIII	GCCGAG	2 cut(s)	445, 667
NmuCI	GTSAC	2 cut(s)	70, 444
NsiI	ATGCAT	2 cut(s)	598, 924
NspI	RCATGY	4 cut(s)	600, 829, 926, 1170
NspV	TTCGAA	1 cut(s)	992
PaeI	GCATGC	1 cut(s)	600
PciI	ACATGT	1 cut(s)	1166
PciSI	GCTCTTC	1 cut(s)	435
PctI	GAATGC	2 cut(s)	202, 1106
PfeI	GAWTC	5 cut(s)	58, 264, 778, 1235, 1245
PfoI	TCCNGGA	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	286, 748, 1041
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
Ppu21I	YACGTR	1 cut(s)	478
PscI	ACATGT	1 cut(s)	1166
PsiI	TTATAA	1 cut(s)	653
Psp6I	CCWGG	2 cut(s)	886, 1129
PspGI	CCWGG	2 cut(s)	886, 1129
PspPI	GGNCC	3 cut(s)	362, 586, 690
PsrI	GAACNNNNNNTAC	2 cut(s)	1064, 1096
PstI	CTGCAG	1 cut(s)	751
PstNI	CAGNNNCTG	1 cut(s)	1136
RsaI	GTAC	4 cut(s)	240, 463, 508, 1082
RsaNI	GTAC	4 cut(s)	239, 462, 507, 1081
SapI	GCTCTTC	1 cut(s)	435
SaqAI	TTAA	7 cut(s)	453, 555, 572, 698, 1152, 1160, 1191
SatI	GCNGC	3 cut(s)	285, 747, 1040
Sau3AI	GATC	6 cut(s)	208, 268, 472, 906, 940, 970
Sau96I	GGNCC	3 cut(s)	362, 586, 690
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	4 cut(s)	157, 360, 888, 1131
SduI	GDGCHC	1 cut(s)	295
SexAI	ACCWGGT	1 cut(s)	886
SfaNI	GCATC	2 cut(s)	345, 909
SfcI	CTRYAG	1 cut(s)	747
SfuI	TTCGAA	1 cut(s)	992
SinI	GGWCC	2 cut(s)	362, 586
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
SphI	GCATGC	1 cut(s)	600
Sse9I	AATT	6 cut(s)	699, 714, 987, 1156, 1188, 1193
SsiI	CCGC	3 cut(s)	584, 819, 1231
SspI	AATATT	1 cut(s)	649
SspMI	CTAG	3 cut(s)	33, 227, 675
StyD4I	CCNGG	4 cut(s)	155, 358, 886, 1129
StyI	CCWWGG	1 cut(s)	226
TaaI	ACNGT	1 cut(s)	1088
TaiI	ACGT	3 cut(s)	182, 480, 729
TaqI	TCGA	7 cut(s)	45, 61, 267, 525, 992, 1243, 1281
TasI	AATT	6 cut(s)	699, 714, 987, 1156, 1188, 1193
TatI	WGTACW	1 cut(s)	506
TfiI	GAWTC	5 cut(s)	58, 264, 778, 1235, 1245
Tru1I	TTAA	7 cut(s)	453, 555, 572, 698, 1152, 1160, 1191
Tru9I	TTAA	7 cut(s)	453, 555, 572, 698, 1152, 1160, 1191
TscAI	CASTG	2 cut(s)	331, 1093
TseFI	GTSAC	2 cut(s)	70, 444
TseI	GCWGC	3 cut(s)	284, 746, 1039
Tsp45I	GTSAC	2 cut(s)	70, 444
TspGWI	ACGGA	1 cut(s)	271
TspRI	CASTG	2 cut(s)	331, 1093
VpaK11BI	GGWCC	2 cut(s)	362, 586
XapI	RAATTY	4 cut(s)	714, 987, 1156, 1193
XceI	RCATGY	4 cut(s)	600, 829, 926, 1170
XcmI	CCANNNNNNNNNTGG	1 cut(s)	894
XmaJI	CCTAGG	1 cut(s)	226
XspI	CTAG	3 cut(s)	33, 227, 675
Zsp2I	ATGCAT	2 cut(s)	598, 924

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.