Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G37170 |
| fragaria_vesca | FvH4_1g15050 FvH4_1g15080 |
| malus_domestica | MD15G1276800.v1.1 |
| prunus_persica | Prupe.7G139900_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr2g0104091 RchiOBHm_Chr2g0104101 |
| rosa_laevigata | RLG00000017288 RLG00000017299 |
| rosa_multiflora | Rmu_ssc0000257.1_g000009 |
| rosa_rugosa | Rorug02G0119400 |
| rosa_samantha | Rh2BG176100 Rh2CG174500 Rh2CG174700 |
| rosa_wichuraiana | Rw2G013220 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 85 |
| AcsI | RAATTY | 1 cut(s) | 63 |
| AfaI | GTAC | 2 cut(s) | 243, 397 |
| AflIII | ACRYGT | 1 cut(s) | 403 |
| AgsI | TTSAA | 2 cut(s) | 70, 290 |
| AhlI | ACTAGT | 1 cut(s) | 332 |
| AjiI | CACGTC | 1 cut(s) | 404 |
| AjnI | CCWGG | 1 cut(s) | 235 |
| AluBI | AGCT | 3 cut(s) | 23, 144, 464 |
| AluI | AGCT | 3 cut(s) | 23, 144, 464 |
| Alw26I | GTCTC | 1 cut(s) | 421 |
| Aor13HI | TCCGGA | 1 cut(s) | 85 |
| ApoI | RAATTY | 1 cut(s) | 63 |
| AsuII | TTCGAA | 1 cut(s) | 343 |
| BccI | CCATC | 2 cut(s) | 191, 253 |
| BciT130I | CCWGG | 1 cut(s) | 237 |
| BciVI | GTATCC | 1 cut(s) | 82 |
| BcoDI | GTCTC | 1 cut(s) | 421 |
| BcuI | ACTAGT | 1 cut(s) | 332 |
| BfaI | CTAG | 2 cut(s) | 333, 431 |
| BfuI | GTATCC | 1 cut(s) | 82 |
| Bme1390I | CCNGG | 1 cut(s) | 237 |
| BmgBI | CACGTC | 1 cut(s) | 404 |
| BmrFI | CCNGG | 1 cut(s) | 237 |
| Bpu14I | TTCGAA | 1 cut(s) | 343 |
| BpuEI | CTTGAG | 1 cut(s) | 400 |
| BsaWI | WCCGGW | 1 cut(s) | 85 |
| Bse3DI | GCAATG | 2 cut(s) | 12, 270 |
| BseAI | TCCGGA | 1 cut(s) | 85 |
| BseBI | CCWGG | 1 cut(s) | 237 |
| BseGI | GGATG | 1 cut(s) | 108 |
| BseMI | GCAATG | 2 cut(s) | 12, 270 |
| BseRI | GAGGAG | 1 cut(s) | 102 |
| BsiSI | CCGG | 1 cut(s) | 86 |
| BsmAI | GTCTC | 1 cut(s) | 421 |
| Bsp119I | TTCGAA | 1 cut(s) | 343 |
| Bsp13I | TCCGGA | 1 cut(s) | 85 |
| Bsp1407I | TGTACA | 1 cut(s) | 241 |
| BspEI | TCCGGA | 1 cut(s) | 85 |
| BspHI | TCATGA | 1 cut(s) | 115 |
| BspT104I | TTCGAA | 1 cut(s) | 343 |
| BsrDI | GCAATG | 2 cut(s) | 12, 270 |
| BsrGI | TGTACA | 1 cut(s) | 241 |
| Bst2UI | CCWGG | 1 cut(s) | 237 |
| Bst4CI | ACNGT | 2 cut(s) | 208, 227 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 11 |
| BstAUI | TGTACA | 1 cut(s) | 241 |
| BstBI | TTCGAA | 1 cut(s) | 343 |
| BstC8I | GCNNGC | 1 cut(s) | 12 |
| BstDEI | CTNAG | 1 cut(s) | 167 |
| BstF5I | GGATG | 1 cut(s) | 108 |
| BstMAI | GTCTC | 1 cut(s) | 421 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 11, 20 |
| BstNI | CCWGG | 1 cut(s) | 237 |
| BstSCI | CCNGG | 1 cut(s) | 235 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 52 |
| BsuI | GTATCC | 1 cut(s) | 82 |
| BtgZI | GCGATG | 1 cut(s) | 210 |
| BtrI | CACGTC | 1 cut(s) | 404 |
| BtsCI | GGATG | 1 cut(s) | 108 |
| Cac8I | GCNNGC | 1 cut(s) | 12 |
| CciI | TCATGA | 1 cut(s) | 115 |
| Csp6I | GTAC | 2 cut(s) | 242, 396 |
| CviAII | CATG | 2 cut(s) | 46, 116 |
| CviJI | RGCY | 8 cut(s) | 23, 74, 144, 256, 349, 368, 384, 464 |
| CviKI_1 | RGCY | 8 cut(s) | 23, 74, 144, 256, 349, 368, 384, 464 |
| CviQI | GTAC | 2 cut(s) | 242, 396 |
| DdeI | CTNAG | 1 cut(s) | 167 |
| EcoRII | CCWGG | 1 cut(s) | 235 |
| FaeI | CATG | 2 cut(s) | 49, 119 |
| FaiI | YATR | 3 cut(s) | 47, 117, 372 |
| FatI | CATG | 2 cut(s) | 45, 115 |
| FokI | GGATG | 1 cut(s) | 115 |
| FspBI | CTAG | 2 cut(s) | 333, 431 |
| HapII | CCGG | 1 cut(s) | 86 |
| Hin1II | CATG | 2 cut(s) | 49, 119 |
| HincII | GTYRAC | 2 cut(s) | 211, 298 |
| HindII | GTYRAC | 2 cut(s) | 211, 298 |
| HindIII | AAGCTT | 2 cut(s) | 21, 142 |
| HinfI | GANTC | 3 cut(s) | 119, 310, 340 |
| HpaI | GTTAAC | 2 cut(s) | 211, 298 |
| HpaII | CCGG | 1 cut(s) | 86 |
| Hpy166II | GTNNAC | 3 cut(s) | 211, 242, 298 |
| Hpy188I | TCNGA | 1 cut(s) | 223 |
| Hpy188III | TCNNGA | 3 cut(s) | 86, 116, 379 |
| Hpy8I | GTNNAC | 3 cut(s) | 211, 242, 298 |
| HpyAV | CCTTC | 2 cut(s) | 135, 339 |
| HpyCH4III | ACNGT | 2 cut(s) | 208, 227 |
| HpyCH4IV | ACGT | 1 cut(s) | 403 |
| HpyCH4V | TGCA | 1 cut(s) | 14 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 11, 20 |
| HpyF3I | CTNAG | 1 cut(s) | 167 |
| HpySE526I | ACGT | 1 cut(s) | 403 |
| Hsp92II | CATG | 2 cut(s) | 49, 119 |
| Kpn2I | TCCGGA | 1 cut(s) | 85 |
| KspAI | GTTAAC | 2 cut(s) | 211, 298 |
| LpnPI | CCDG | 6 cut(s) | 99, 222, 249, 278, 299, 303 |
| MaeI | CTAG | 2 cut(s) | 333, 431 |
| MaeII | ACGT | 1 cut(s) | 403 |
| MaeIII | GTNAC | 1 cut(s) | 34 |
| MluCI | AATT | 2 cut(s) | 63, 189 |
| MnlI | CCTC | 5 cut(s) | 21, 123, 277, 358, 395 |
| MroI | TCCGGA | 1 cut(s) | 85 |
| MseI | TTAA | 6 cut(s) | 210, 252, 297, 305, 392, 456 |
| MspI | CCGG | 1 cut(s) | 86 |
| MspR9I | CCNGG | 1 cut(s) | 237 |
| MvaI | CCWGG | 1 cut(s) | 237 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 11, 20 |
| NlaIII | CATG | 2 cut(s) | 49, 119 |
| NmuCI | GTSAC | 1 cut(s) | 34 |
| NspV | TTCGAA | 1 cut(s) | 343 |
| PagI | TCATGA | 1 cut(s) | 115 |
| PfeI | GAWTC | 3 cut(s) | 119, 310, 340 |
| Psp6I | CCWGG | 1 cut(s) | 235 |
| PspGI | CCWGG | 1 cut(s) | 235 |
| RsaI | GTAC | 2 cut(s) | 243, 397 |
| RsaNI | GTAC | 2 cut(s) | 242, 396 |
| SaqAI | TTAA | 6 cut(s) | 210, 252, 297, 305, 392, 456 |
| ScrFI | CCNGG | 1 cut(s) | 237 |
| SetI | ASST | 6 cut(s) | 25, 146, 288, 297, 406, 466 |
| SfuI | TTCGAA | 1 cut(s) | 343 |
| SmlI | CTYRAG | 1 cut(s) | 379 |
| SmoI | CTYRAG | 1 cut(s) | 379 |
| SpeI | ACTAGT | 1 cut(s) | 332 |
| Sse9I | AATT | 2 cut(s) | 63, 189 |
| SspI | AATATT | 1 cut(s) | 80 |
| SspMI | CTAG | 2 cut(s) | 333, 431 |
| StyD4I | CCNGG | 1 cut(s) | 235 |
| TaaI | ACNGT | 2 cut(s) | 208, 227 |
| TaiI | ACGT | 1 cut(s) | 406 |
| TaqI | TCGA | 2 cut(s) | 61, 343 |
| TasI | AATT | 2 cut(s) | 63, 189 |
| TatI | WGTACW | 2 cut(s) | 241, 395 |
| TfiI | GAWTC | 3 cut(s) | 119, 310, 340 |
| Tru1I | TTAA | 6 cut(s) | 210, 252, 297, 305, 392, 456 |
| Tru9I | TTAA | 6 cut(s) | 210, 252, 297, 305, 392, 456 |
| TseFI | GTSAC | 1 cut(s) | 34 |
| Tsp45I | GTSAC | 1 cut(s) | 34 |
| XapI | RAATTY | 1 cut(s) | 63 |
| XspI | CTAG | 2 cut(s) | 333, 431 |