Prupe.7G201700_v2.0.a1
MYB Family

transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0017380
Physical Location & Seq
Reverse (-)
18787963 .. 18789441
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G201700.1

Sequence Viewer

Length: 897 bp
ATGGGGAGAAAACCATGCTGTGATAAAGAAGGGCTGAACAAGGGAGCATGGTCTGCTTGGGAAGATAAAGCCCTTGCTAACTACATTAACACTCACGGAGAAGGAAAATGGAGGGACCTTCCACCAAGAGCGGGGTTAAACCGCTGTGGGAAGAGTTGCAGATTGCGTTGGCTGAATTATCTTAGGCCTGATATTAAGAGAGGCAACATTTCCCCTGAAGAAGAGGAGCTCATTGTTAGACTTCATAAGCTTCTTGGAAACAGGTGGTCACTCATTGCTGGAAGGTTGCCGGGACGAACAGACAATGAAATCAAGAACTACTGGAACACCAATTTGAGCAAGAGGTCAGAGCAAGGAAGTGACAAGGCTCATCAGGATCAACGGAGTTCTAGCACTAGTTCGAAAGACGACACGAAAAAATCGAATAATCCGGCATCAAAGTCTTCTGTCCAGGTGATCCGTACGAAAGCATTTAAGTGCAGGAAGGTTGCCATCCCCTCACATTTGGATGGCCATGATCAAATGCTTGAAAGATCGAACGTGGCTCCTGTTTCCGACAGCGAAAGCCCGTGTTCTTCAGCGGCTCAGGAGCATGATTCTTCGTTTGGTTTTCTGAGGGATTTTGATATCAATGACATGCTCATACCGGATGTGCTGAGTTCTGATTTCCAACAAGCACAAATCAACGACTGTGATCAGGACATGTTGGAGTGTGGAATTACCAAGATTGAAGATTTATTGATGGGTGAAGCAAGGTTGGGAGAATGGAGAGCTGGTGATGAGGATCAAGATGACCCACTTCAACCAAATGATGATGATCATGGAGATGTGGACGGCTTCAATGCACTTTCGTCTTTTCTGAATTCAGTAGATAATGATCAGTGGATCATTAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

299

Amino Acids

33.52

Weight (kDa)

5.18

Isoelectric Point (pI)

47.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017380)

Species Orthologous Gene IDs
malus_domestica MD02G1087700.v1.1 MD15G1215400.v1.1
prunus_persica Prupe.7G201700_v2.0.a1 Prupe.7G201800_v2.0.a1
pyrus_communis pycom02g07050
rosa_chinensis RchiOBHm_Chr2g0094481
rosa_laevigata RLG00000016494
rosa_multiflora Rmu_sc0004359.1_g000049
rosa_roxburghii Rroxscaffold_2G00147140
rosa_samantha Rh2AG092400 Rh2BG092600 Rh2CG095100 Rh2DG091400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 131
AciI CCGC 3 cut(s) 131, 142, 581
AclWI GGATC 4 cut(s) 384, 451, 792, 893
AcoI YGGCCR 1 cut(s) 511
AcsI RAATTY 1 cut(s) 862
AcuI CTGAAG 2 cut(s) 237, 561
AfaI GTAC 1 cut(s) 463
AfiI CCNNNNNNNGG 1 cut(s) 131
AflIII ACRYGT 1 cut(s) 702
AgsI TTSAA 4 cut(s) 530, 731, 803, 841
AhlI ACTAGT 1 cut(s) 395
AjnI CCWGG 1 cut(s) 450
AluBI AGCT 3 cut(s) 229, 250, 773
AluI AGCT 3 cut(s) 229, 250, 773
Alw21I GWGCWC 1 cut(s) 231
AlwI GGATC 4 cut(s) 384, 451, 792, 893
AoxI GGCC 2 cut(s) 185, 511
ApoI RAATTY 1 cut(s) 862
AspS9I GGNCC 1 cut(s) 115
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 3 cut(s) 466, 758, 788
AsuII TTCGAA 1 cut(s) 401
AvaII GGWCC 1 cut(s) 115
BalI TGGCCA 1 cut(s) 513
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 435
Bbv12I GWGCWC 1 cut(s) 231
BccI CCATC 3 cut(s) 500, 503, 736
BceAI ACGGC 1 cut(s) 850
BciT130I CCWGG 1 cut(s) 452
BclI TGATCA 4 cut(s) 517, 694, 817, 877
BcnI CCSGG 1 cut(s) 291
BcuI ACTAGT 1 cut(s) 395
BfaI CTAG 2 cut(s) 390, 396
BisI GCNGC 1 cut(s) 582
BlsI GCNGC 1 cut(s) 583
Bme1390I CCNGG 2 cut(s) 291, 452
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmiI GGNNCC 2 cut(s) 116, 546
BmrFI CCNGG 2 cut(s) 291, 452
BmsI GCATC 1 cut(s) 443
BpiI GAAGAC 1 cut(s) 435
Bpu10I CCTNAGC 1 cut(s) 585
Bpu14I TTCGAA 1 cut(s) 401
BpuMI CCSGG 1 cut(s) 291
BsaBI GATNNNNATC 3 cut(s) 783, 816, 876
BsaWI WCCGGW 1 cut(s) 646
BsaXI ACNNNNNCTCC 2 cut(s) 760, 790
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 273
Bse8I GATNNNNATC 3 cut(s) 783, 816, 876
BseBI CCWGG 1 cut(s) 452
BseGI GGATG 3 cut(s) 492, 514, 655
BseJI GATNNNNATC 3 cut(s) 783, 816, 876
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 3 cut(s) 599, 605, 647
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 1 cut(s) 239
BsgI GTGCAG 1 cut(s) 499
BshFI GGCC 2 cut(s) 187, 513
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 3 cut(s) 290, 431, 647
BsiWI CGTACG 1 cut(s) 461
BslFI GGGAC 2 cut(s) 128, 306
BslI CCNNNNNNNGG 1 cut(s) 131
BsmFI GGGAC 2 cut(s) 128, 306
BsnI GGCC 2 cut(s) 187, 513
Bsp119I TTCGAA 1 cut(s) 401
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 9 cut(s) 376, 456, 517, 533, 694, 784, 817, 877, 885
BspACI CCGC 3 cut(s) 131, 142, 581
BspANI GGCC 2 cut(s) 187, 513
BspCNI CTCAG 3 cut(s) 598, 606, 648
BspLI GGNNCC 2 cut(s) 116, 546
BspPI GGATC 4 cut(s) 384, 451, 792, 893
BspT104I TTCGAA 1 cut(s) 401
BsrBI CCGCTC 1 cut(s) 131
BsrDI GCAATG 1 cut(s) 273
BsrI ACTGG 1 cut(s) 326
BssMI GATC 9 cut(s) 376, 456, 517, 533, 694, 784, 817, 877, 885
Bst2UI CCWGG 1 cut(s) 452
Bst4CI ACNGT 1 cut(s) 692
Bst6I CTCTTC 2 cut(s) 146, 216
BstAPI GCANNNNNTGC 1 cut(s) 53
BstBI TTCGAA 1 cut(s) 401
BstDEI CTNAG 4 cut(s) 182, 585, 614, 656
BstF5I GGATG 3 cut(s) 492, 514, 655
BstKTI GATC 9 cut(s) 379, 459, 520, 536, 697, 787, 820, 880, 888
BstMBI GATC 9 cut(s) 376, 456, 517, 533, 694, 784, 817, 877, 885
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 1 cut(s) 452
BstNSI RCATGY 2 cut(s) 640, 706
BstSCI CCNGG 2 cut(s) 289, 450
BstV2I GAAGAC 1 cut(s) 435
BsuRI GGCC 2 cut(s) 187, 513
BtsCI GGATG 3 cut(s) 492, 514, 655
BtsIMutI CAGTG 1 cut(s) 887
Cfr13I GGNCC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 462
CviAII CATG 7 cut(s) 15, 48, 515, 593, 637, 703, 821
CviQI GTAC 1 cut(s) 462
DdeI CTNAG 4 cut(s) 182, 585, 614, 656
DpnI GATC 9 cut(s) 378, 458, 519, 535, 696, 786, 819, 879, 887
DpnII GATC 9 cut(s) 376, 456, 517, 533, 694, 784, 817, 877, 885
EaeI YGGCCR 1 cut(s) 511
Eam1104I CTCTTC 2 cut(s) 146, 216
EarI CTCTTC 2 cut(s) 146, 216
Ecl136II GAGCTC 1 cut(s) 229
Eco147I AGGCCT 1 cut(s) 187
Eco24I GRGCYC 1 cut(s) 231
Eco32I GATATC 1 cut(s) 628
Eco47I GGWCC 1 cut(s) 115
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 2 cut(s) 237, 561
EcoICRI GAGCTC 1 cut(s) 229
EcoO109I RGGNCCY 1 cut(s) 115
EcoRI GAATTC 1 cut(s) 862
EcoRII CCWGG 1 cut(s) 450
EcoRV GATATC 1 cut(s) 628
EcoT38I GRGCYC 1 cut(s) 231
FaeI CATG 7 cut(s) 18, 51, 518, 596, 640, 706, 824
FaiI YATR 9 cut(s) 16, 49, 246, 516, 594, 638, 644, 704, 822
FaqI GGGAC 2 cut(s) 128, 306
FatI CATG 7 cut(s) 14, 47, 514, 592, 636, 702, 820
FauI CCCGC 1 cut(s) 124
FbaI TGATCA 4 cut(s) 517, 694, 817, 877
Fnu4HI GCNGC 1 cut(s) 582
FokI GGATG 3 cut(s) 479, 521, 662
FriOI GRGCYC 1 cut(s) 231
Fsp4HI GCNGC 1 cut(s) 582
FspBI CTAG 2 cut(s) 390, 396
GluI GCNGC 1 cut(s) 582
HaeIII GGCC 2 cut(s) 187, 513
HapII CCGG 3 cut(s) 290, 431, 647
Hin1II CATG 7 cut(s) 18, 51, 518, 596, 640, 706, 824
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 1 cut(s) 596
HpaII CCGG 3 cut(s) 290, 431, 647
HphI GGTGA 3 cut(s) 466, 758, 788
Hpy166II GTNNAC 1 cut(s) 832
Hpy188I TCNGA 5 cut(s) 349, 556, 615, 664, 861
Hpy188III TCNNGA 5 cut(s) 313, 374, 587, 698, 788
Hpy8I GTNNAC 1 cut(s) 832
HpyAV CCTTC 5 cut(s) 23, 95, 128, 276, 478
HpyCH4III ACNGT 1 cut(s) 692
HpyCH4IV ACGT 1 cut(s) 540
HpyCH4V TGCA 3 cut(s) 159, 480, 845
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 4 cut(s) 182, 585, 614, 656
HpySE526I ACGT 1 cut(s) 540
Hsp92II CATG 7 cut(s) 18, 51, 518, 596, 640, 706, 824
Ksp22I TGATCA 4 cut(s) 517, 694, 817, 877
Kzo9I GATC 9 cut(s) 376, 456, 517, 533, 694, 784, 817, 877, 885
LmnI GCTCC 4 cut(s) 44, 226, 550, 589
LweI GCATC 1 cut(s) 443
MaeI CTAG 2 cut(s) 390, 396
MaeII ACGT 1 cut(s) 540
MaeIII GTNAC 2 cut(s) 267, 359
MalI GATC 9 cut(s) 378, 458, 519, 535, 696, 786, 819, 879, 887
MbiI CCGCTC 1 cut(s) 131
MboI GATC 9 cut(s) 376, 456, 517, 533, 694, 784, 817, 877, 885
MboII GAAGA 8 cut(s) 74, 163, 230, 233, 435, 567, 591, 743
MhlI GDGCHC 1 cut(s) 231
MlsI TGGCCA 1 cut(s) 513
MluCI AATT 4 cut(s) 175, 331, 717, 862
MluNI TGGCCA 1 cut(s) 513
MmeI TCCRAC 3 cut(s) 579, 687, 694
MnlI CCTC 7 cut(s) 105, 194, 217, 336, 508, 609, 775
Mox20I TGGCCA 1 cut(s) 513
MscI TGGCCA 1 cut(s) 513
MseI TTAA 5 cut(s) 87, 137, 195, 474, 895
MslI CAYNNNNRTG 3 cut(s) 475, 507, 825
Msp20I TGGCCA 1 cut(s) 513
MspA1I CMGCKG 2 cut(s) 144, 581
MspI CCGG 3 cut(s) 290, 431, 647
MspR9I CCNGG 2 cut(s) 291, 452
MvaI CCWGG 1 cut(s) 452
MwoI GCNNNNNNNGC 1 cut(s) 53
NciI CCSGG 1 cut(s) 291
NdeII GATC 9 cut(s) 376, 456, 517, 533, 694, 784, 817, 877, 885
NlaIII CATG 7 cut(s) 18, 51, 518, 596, 640, 706, 824
NlaIV GGNNCC 2 cut(s) 116, 546
NmuCI GTSAC 2 cut(s) 267, 359
NspI RCATGY 2 cut(s) 640, 706
NspV TTCGAA 1 cut(s) 401
PceI AGGCCT 1 cut(s) 187
PciI ACATGT 1 cut(s) 702
PcsI WCGNNNNNNNCGW 1 cut(s) 419
PfeI GAWTC 1 cut(s) 596
Pfl23II CGTACG 1 cut(s) 461
PkrI GCNGC 1 cut(s) 583
PpuMI RGGWCCY 1 cut(s) 115
PscI ACATGT 1 cut(s) 702
Psp124BI GAGCTC 1 cut(s) 231
Psp5II RGGWCCY 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 450
PspGI CCWGG 1 cut(s) 450
PspLI CGTACG 1 cut(s) 461
PspN4I GGNNCC 2 cut(s) 116, 546
PspPI GGNCC 1 cut(s) 115
PspPPI RGGWCCY 1 cut(s) 115
RsaI GTAC 1 cut(s) 463
RsaNI GTAC 1 cut(s) 462
RseI CAYNNNNRTG 3 cut(s) 475, 507, 825
SacI GAGCTC 1 cut(s) 231
SaqAI TTAA 5 cut(s) 87, 137, 195, 474, 895
SatI GCNGC 1 cut(s) 582
Sau3AI GATC 9 cut(s) 376, 456, 517, 533, 694, 784, 817, 877, 885
Sau96I GGNCC 1 cut(s) 115
ScrFI CCNGG 2 cut(s) 291, 452
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 1 cut(s) 443
SfuI TTCGAA 1 cut(s) 401
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 3 cut(s) 475, 507, 825
SpeI ACTAGT 1 cut(s) 395
Sse9I AATT 4 cut(s) 175, 331, 717, 862
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 3 cut(s) 131, 142, 581
SspMI CTAG 2 cut(s) 390, 396
SstI GAGCTC 1 cut(s) 231
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 2 cut(s) 289, 450
TaaI ACNGT 1 cut(s) 692
TaiI ACGT 1 cut(s) 543
TaqI TCGA 3 cut(s) 401, 422, 536
TasI AATT 4 cut(s) 175, 331, 717, 862
TauI GCSGC 1 cut(s) 584
TfiI GAWTC 1 cut(s) 596
Tru1I TTAA 5 cut(s) 87, 137, 195, 474, 895
Tru9I TTAA 5 cut(s) 87, 137, 195, 474, 895
TscAI CASTG 1 cut(s) 887
TseFI GTSAC 2 cut(s) 267, 359
Tsp45I GTSAC 2 cut(s) 267, 359
TspDTI ATGAA 2 cut(s) 233, 321
TspGWI ACGGA 3 cut(s) 111, 397, 449
TspRI CASTG 1 cut(s) 887
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 1 cut(s) 862
XceI RCATGY 2 cut(s) 640, 706
XspI CTAG 2 cut(s) 390, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.