pycom02g07050
MYB Family

transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0017380
Physical Location & Seq
Forward (+)
4911033 .. 4912560
1528 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g07050.2

Sequence Viewer

Length: 1014 bp
ATGGGAAGAAAACCATGCTGTGATAAAGAAGGGCTAAACAGGGGAGCATGGTCAGCTTGGGAAGATAAAATCCTTACCAACTACATTGAAACAAATGGAGAAGGAAAATGGCGAGACCTTCCTCAAAGAGCTGGTATGTGTGTGTATGCACTTTACATATTTAAATTTACAATATTTTTTTTCAGATGCTGTATGCGTAGAATCCAAATTAGCATTAACTATGTTGCTGCAGGGTTAAACCGGTGTGGAAAGAGCTGCAGACTGCGATGGTTGAATTATCTGAGGCCTGACATTAAGAGAGGTAACATTTCCGGTGAAGAAGAAGACCTCATCATTAGACTACATAAGCTTCTTGGAAACAGGTGGTCATTGATCGCTGGAAGACTGCCGGGACGAACTGACAATGAGATCAAGAACTACTGGAACACCACTCTGAGCAAGAAAACGGAGCAAGGAAGCGACAAGGCTCCTCGTCCTGAACGTACTAGTACTACTAACTCAAACGAGTACACACCAAAACCGAAACCAGCATCAAAGTCTCATCAGACGGTCCAGGTGATTCGAACGAAAGCATTTAAGTGCAGAAAGGTTGTCATCCCATCACATTTGGACGATCACGATCAAATGGTTGATAGGTTAAATGTAAACCCTGGTTTGGTCCCGTGTGAATGCCCTAGTTCATCAGCGTCTCAGGATCCACAGGAGGACTCACCTCCTTGTGGTTTTCTAATAGATTTCAATATCGATGACCTTTTCATATCTGATTTATTAAAGACAGAGAATTTTCTCCAAGATCAAATCGATAAATGTGATCAAGAAATGGAAGATGGAATCATCAAGCTTGAAGGTTTGATGGGTGAAGCAATGTTGGAAAATTCGACCGCTAGTGTTCATGATCATCACGATGACCAGATATTTCAGCCAAAGGATGATCATGATCGTGTCCACGGCCTCAATGCAATTTCATATTTTCTGAATTTAGAAGACGATCATGAAAAGTGGAGCAGTAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

338

Amino Acids

38.7

Weight (kDa)

6.09

Isoelectric Point (pI)

37.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017380)

Species Orthologous Gene IDs
malus_domestica MD02G1087700.v1.1 MD15G1215400.v1.1
prunus_persica Prupe.7G201700_v2.0.a1 Prupe.7G201800_v2.0.a1
pyrus_communis pycom02g07050
rosa_chinensis RchiOBHm_Chr2g0094481
rosa_laevigata RLG00000016494
rosa_multiflora Rmu_sc0004359.1_g000049
rosa_roxburghii Rroxscaffold_2G00147140
rosa_samantha Rh2AG092400 Rh2BG092600 Rh2CG095100 Rh2DG091400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 882
AclWI GGATC 2 cut(s) 689, 702
AcsI RAATTY 4 cut(s) 164, 781, 874, 976
AfaI GTAC 3 cut(s) 484, 490, 509
AfiI CCNNNNNNNGG 2 cut(s) 655, 719
AgeI ACCGGT 1 cut(s) 240
AgsI TTSAA 4 cut(s) 89, 274, 739, 845
AhlI ACTAGT 1 cut(s) 485
AjnI CCWGG 2 cut(s) 552, 649
AluBI AGCT 5 cut(s) 56, 131, 255, 349, 841
AluI AGCT 5 cut(s) 56, 131, 255, 349, 841
Alw26I GTCTC 3 cut(s) 108, 543, 693
AlwI GGATC 2 cut(s) 689, 702
AlwNI CAGNNNCTG 1 cut(s) 189
AoxI GGCC 2 cut(s) 284, 949
ApeKI GCWGC 2 cut(s) 227, 255
ApoI RAATTY 4 cut(s) 164, 781, 874, 976
AsiGI ACCGGT 1 cut(s) 240
AspS9I GGNCC 2 cut(s) 550, 658
AsuC2I CCSGG 1 cut(s) 390
AsuHPI GGTGA 4 cut(s) 326, 568, 702, 869
AsuII TTCGAA 1 cut(s) 562
AvaII GGWCC 2 cut(s) 550, 658
BamHI GGATCC 1 cut(s) 694
BbsI GAAGAC 3 cut(s) 330, 388, 990
BbvI GCAGC 2 cut(s) 214, 242
BccI CCATC 4 cut(s) 261, 607, 821, 847
BceAI ACGGC 1 cut(s) 964
BciT130I CCWGG 2 cut(s) 554, 651
BclI TGATCA 3 cut(s) 811, 895, 931
BcnI CCSGG 1 cut(s) 390
BcoDI GTCTC 3 cut(s) 108, 543, 693
BcuI ACTAGT 1 cut(s) 485
BfaI CTAG 3 cut(s) 486, 675, 885
BfmI CTRYAG 2 cut(s) 228, 256
BisI GCNGC 2 cut(s) 228, 256
BlsI GCNGC 2 cut(s) 229, 257
BmcAI AGTACT 1 cut(s) 490
Bme1390I CCNGG 3 cut(s) 390, 554, 651
Bme18I GGWCC 2 cut(s) 550, 658
BmgT120I GGNCC 2 cut(s) 550, 658
BmiI GGNNCC 3 cut(s) 468, 660, 696
BmrFI CCNGG 3 cut(s) 390, 554, 651
BmsI GCATC 2 cut(s) 176, 539
BpiI GAAGAC 3 cut(s) 330, 388, 990
Bpu14I TTCGAA 1 cut(s) 562
BpuMI CCSGG 1 cut(s) 390
Bsa29I ATCGAT 2 cut(s) 744, 801
BsaBI GATNNNNATC 2 cut(s) 618, 936
BsaI GGTCTC 1 cut(s) 108
BsaJI CCNNGG 2 cut(s) 649, 946
BsaWI WCCGGW 2 cut(s) 240, 311
Bsc4I CCNNNNNNNGG 2 cut(s) 655, 719
Bse118I RCCGGY 1 cut(s) 240
Bse1I ACTGG 1 cut(s) 425
Bse3DI GCAATG 1 cut(s) 870
Bse8I GATNNNNATC 2 cut(s) 618, 936
BseBI CCWGG 2 cut(s) 554, 651
BseCI ATCGAT 2 cut(s) 744, 801
BseDI CCNNGG 2 cut(s) 649, 946
BseGI GGATG 2 cut(s) 594, 934
BseJI GATNNNNATC 2 cut(s) 618, 936
BseLI CCNNNNNNNGG 2 cut(s) 655, 719
BseMI GCAATG 1 cut(s) 870
BseMII CTCAG 3 cut(s) 272, 425, 704
BseNI ACTGG 1 cut(s) 425
BseRI GAGGAG 1 cut(s) 459
BseXI GCAGC 2 cut(s) 214, 242
BsgI GTGCAG 1 cut(s) 601
Bsh1285I CGRYCG 1 cut(s) 882
BshFI GGCC 2 cut(s) 286, 951
BshTI ACCGGT 1 cut(s) 240
BshVI ATCGAT 2 cut(s) 744, 801
BsiEI CGRYCG 1 cut(s) 882
BsiSI CCGG 3 cut(s) 241, 312, 389
BslFI GGGAC 2 cut(s) 405, 644
BslI CCNNNNNNNGG 2 cut(s) 655, 719
BsmAI GTCTC 3 cut(s) 108, 543, 693
BsmBI CGTCTC 1 cut(s) 693
BsmFI GGGAC 2 cut(s) 405, 644
BsmI GAATGC 1 cut(s) 674
BsnI GGCC 2 cut(s) 286, 951
Bso31I GGTCTC 1 cut(s) 108
Bsp119I TTCGAA 1 cut(s) 562
BspACI CCGC 1 cut(s) 882
BspANI GGCC 2 cut(s) 286, 951
BspCNI CTCAG 3 cut(s) 273, 426, 703
BspDI ATCGAT 2 cut(s) 744, 801
BspHI TCATGA 3 cut(s) 892, 934, 991
BspLI GGNNCC 3 cut(s) 468, 660, 696
BspMAI CTGCAG 2 cut(s) 232, 260
BspPI GGATC 2 cut(s) 689, 702
BspT104I TTCGAA 1 cut(s) 562
BspTNI GGTCTC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 870
BsrFI RCCGGY 1 cut(s) 240
BsrI ACTGG 1 cut(s) 425
BssAI RCCGGY 1 cut(s) 240
BssECI CCNNGG 2 cut(s) 649, 946
Bst2UI CCWGG 2 cut(s) 554, 651
Bst4CI ACNGT 1 cut(s) 550
BstBI TTCGAA 1 cut(s) 562
BstDEI CTNAG 3 cut(s) 281, 434, 690
BstDSI CCRYGG 1 cut(s) 946
BstF5I GGATG 2 cut(s) 594, 934
BstMAI GTCTC 3 cut(s) 108, 543, 693
BstMCI CGRYCG 1 cut(s) 882
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNI CCWGG 2 cut(s) 554, 651
BstSCI CCNGG 3 cut(s) 388, 552, 649
BstSFI CTRYAG 2 cut(s) 228, 256
BstV1I GCAGC 2 cut(s) 214, 242
BstV2I GAAGAC 3 cut(s) 330, 388, 990
BstX2I RGATCY 1 cut(s) 694
BstYI RGATCY 1 cut(s) 694
Bsu15I ATCGAT 2 cut(s) 744, 801
BsuRI GGCC 2 cut(s) 286, 951
BsuTUI ATCGAT 2 cut(s) 744, 801
BtgI CCRYGG 1 cut(s) 946
BtgZI GCGATG 1 cut(s) 280
BtsCI GGATG 2 cut(s) 594, 934
CaiI CAGNNNCTG 1 cut(s) 189
CciI TCATGA 3 cut(s) 892, 934, 991
Cfr10I RCCGGY 1 cut(s) 240
Cfr13I GGNCC 2 cut(s) 550, 658
ClaI ATCGAT 2 cut(s) 744, 801
CseI GACGC 1 cut(s) 675
Csp6I GTAC 3 cut(s) 483, 489, 508
CspAI ACCGGT 1 cut(s) 240
CviAII CATG 5 cut(s) 15, 48, 893, 935, 992
CviQI GTAC 3 cut(s) 483, 489, 508
DdeI CTNAG 3 cut(s) 281, 434, 690
DraI TTTAAA 1 cut(s) 163
Eco147I AGGCCT 1 cut(s) 286
Eco31I GGTCTC 1 cut(s) 108
Eco47I GGWCC 2 cut(s) 550, 658
EcoRII CCWGG 2 cut(s) 552, 649
Esp3I CGTCTC 1 cut(s) 693
FaeI CATG 5 cut(s) 18, 51, 896, 938, 995
FaqI GGGAC 2 cut(s) 405, 644
FatI CATG 5 cut(s) 14, 47, 892, 934, 991
FbaI TGATCA 3 cut(s) 811, 895, 931
Fnu4HI GCNGC 2 cut(s) 228, 256
FokI GGATG 2 cut(s) 581, 941
Fsp4HI GCNGC 2 cut(s) 228, 256
FspBI CTAG 3 cut(s) 486, 675, 885
GluI GCNGC 2 cut(s) 228, 256
HaeIII GGCC 2 cut(s) 286, 951
HapII CCGG 3 cut(s) 241, 312, 389
HgaI GACGC 1 cut(s) 675
Hin1II CATG 5 cut(s) 18, 51, 896, 938, 995
HindIII AAGCTT 2 cut(s) 347, 839
HinfI GANTC 4 cut(s) 201, 559, 707, 831
HpaII CCGG 3 cut(s) 241, 312, 389
HphI GGTGA 4 cut(s) 326, 568, 702, 869
Hpy166II GTNNAC 3 cut(s) 510, 646, 946
Hpy188I TCNGA 6 cut(s) 185, 282, 435, 546, 763, 975
Hpy188III TCNNGA 9 cut(s) 412, 476, 617, 692, 815, 893, 902, 935, 992
Hpy8I GTNNAC 3 cut(s) 510, 646, 946
HpyAV CCTTC 4 cut(s) 23, 95, 128, 839
HpyCH4III ACNGT 1 cut(s) 550
HpyCH4IV ACGT 1 cut(s) 481
HpyCH4V TGCA 5 cut(s) 149, 230, 258, 582, 959
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
HpyF3I CTNAG 3 cut(s) 281, 434, 690
HpySE526I ACGT 1 cut(s) 481
Hsp92II CATG 5 cut(s) 18, 51, 896, 938, 995
Ksp22I TGATCA 3 cut(s) 811, 895, 931
LmnI GCTCC 4 cut(s) 44, 448, 472, 1002
Lsp1109I GCAGC 2 cut(s) 214, 242
LweI GCATC 2 cut(s) 176, 539
MaeI CTAG 3 cut(s) 486, 675, 885
MaeII ACGT 1 cut(s) 481
MaeIII GTNAC 1 cut(s) 302
MboII GAAGA 8 cut(s) 18, 74, 329, 332, 335, 393, 836, 995
MflI RGATCY 1 cut(s) 694
MluCI AATT 8 cut(s) 164, 207, 274, 781, 874, 960, 976, 1009
MlyI GAGTC 1 cut(s) 701
MmeI TCCRAC 1 cut(s) 849
MnlI CCTC 8 cut(s) 132, 276, 293, 338, 480, 697, 723, 962
MseI TTAA 7 cut(s) 162, 216, 236, 294, 576, 638, 770
MslI CAYNNNNRTG 3 cut(s) 577, 903, 939
MspI CCGG 3 cut(s) 241, 312, 389
MspR9I CCNGG 3 cut(s) 390, 554, 651
Mva1269I GAATGC 1 cut(s) 674
MvaI CCWGG 2 cut(s) 554, 651
MwoI GCNNNNNNNGC 1 cut(s) 53
NciI CCSGG 1 cut(s) 390
NlaIII CATG 5 cut(s) 18, 51, 896, 938, 995
NlaIV GGNNCC 3 cut(s) 468, 660, 696
NspV TTCGAA 1 cut(s) 562
PagI TCATGA 3 cut(s) 892, 934, 991
PceI AGGCCT 1 cut(s) 286
PcsI WCGNNNNNNNCGW 1 cut(s) 478
PctI GAATGC 1 cut(s) 674
PfeI GAWTC 3 cut(s) 201, 559, 831
PinAI ACCGGT 1 cut(s) 240
PkrI GCNGC 2 cut(s) 229, 257
PleI GAGTC 1 cut(s) 701
PpsI GAGTC 1 cut(s) 701
Psp6I CCWGG 2 cut(s) 552, 649
PspGI CCWGG 2 cut(s) 552, 649
PspN4I GGNNCC 3 cut(s) 468, 660, 696
PspPI GGNCC 2 cut(s) 550, 658
PstI CTGCAG 2 cut(s) 232, 260
PstNI CAGNNNCTG 1 cut(s) 189
PsuI RGATCY 1 cut(s) 694
RsaI GTAC 3 cut(s) 484, 490, 509
RsaNI GTAC 3 cut(s) 483, 489, 508
RseI CAYNNNNRTG 3 cut(s) 577, 903, 939
SaqAI TTAA 7 cut(s) 162, 216, 236, 294, 576, 638, 770
SatI GCNGC 2 cut(s) 228, 256
Sau96I GGNCC 2 cut(s) 550, 658
ScaI AGTACT 1 cut(s) 490
SchI GAGTC 1 cut(s) 701
ScrFI CCNGG 3 cut(s) 390, 554, 651
SfaNI GCATC 2 cut(s) 176, 539
SfcI CTRYAG 2 cut(s) 228, 256
SfuI TTCGAA 1 cut(s) 562
SinI GGWCC 2 cut(s) 550, 658
SmiI ATTTAAAT 1 cut(s) 163
SmiMI CAYNNNNRTG 3 cut(s) 577, 903, 939
SpeI ACTAGT 1 cut(s) 485
Sse9I AATT 8 cut(s) 164, 207, 274, 781, 874, 960, 976, 1009
SseBI AGGCCT 1 cut(s) 286
SsiI CCGC 1 cut(s) 882
SspI AATATT 1 cut(s) 174
SspMI CTAG 3 cut(s) 486, 675, 885
StuI AGGCCT 1 cut(s) 286
StyD4I CCNGG 3 cut(s) 388, 552, 649
SwaI ATTTAAAT 1 cut(s) 163
TaaI ACNGT 1 cut(s) 550
TaiI ACGT 1 cut(s) 484
TaqI TCGA 4 cut(s) 562, 744, 801, 878
TasI AATT 8 cut(s) 164, 207, 274, 781, 874, 960, 976, 1009
TatI WGTACW 2 cut(s) 488, 507
TfiI GAWTC 3 cut(s) 201, 559, 831
Tru1I TTAA 7 cut(s) 162, 216, 236, 294, 576, 638, 770
Tru9I TTAA 7 cut(s) 162, 216, 236, 294, 576, 638, 770
TseI GCWGC 2 cut(s) 227, 255
TspDTI ATGAA 5 cut(s) 669, 745, 881, 954, 1008
TspGWI ACGGA 1 cut(s) 461
VpaK11BI GGWCC 2 cut(s) 550, 658
XapI RAATTY 4 cut(s) 164, 781, 874, 976
XspI CTAG 3 cut(s) 486, 675, 885
ZrmI AGTACT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.