RLG00000016494
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0017380
Physical Location & Seq
Forward (+)
7088399 .. 7089448
1050 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016494

Sequence Viewer

Length: 891 bp
ATGGGGAGAAAACCATGCTGTGAAAAGGAAGGGGTCATCAGAGGAGCATGGTCTACAATGGAAGATCAAATCCTCACCGACTACGTTCTAACATATGGAGAAGGGAGATGGAGAGACCTTCCTCAAAAAGCTGGGTTGAACCGGTGCGGGAAGAGTTGCAGACTAAGATGGATAAATTATCTGAGGCCTGATATCAAGAGAGGCAACATTTCTGCTGAAGAAGAAGACCTAATTATCAGACTGCATAAGCTTCTGGGAAACCGGTGGTCTCTCATTGCCGGGAGATTGCCAGGGCGGACAGACAACGAGATCAAGAACTACTGGAACACGACTTTATGCAAGAGATCATCTTCATTGGAGCAAAATGATAAGGAGGAAGCAAGTAAACTGAAAAAATGCACAGCGAGATCAAAGCAGCGAGTATCAGCTGAGTCTCAGAAAAAGCAGGTGGAAGTGATTCGAACAAAAGCAGTTAAGTGCACGAAGGTGTTCATTCCATCACATCTACATAGTTATACTTATGCAGTAACTAATCCTGCTACTTCGGAGTATTCTACTGAAGTCCCGGGTTCTTCAGCCGCGCAGGAGCAGAATTCTTGGGGTCTTGTAATGGATTTCGACATCAATGACCTTCTCATATCGGACATGCTTGAAAGTAGTAAAGATTTCCTGCAACACCAAGTCAATGACTGTCATGAAGATCAAATGGGGGATGATGGAGCCAAGCTTGAGGATTTGTTAATGGCCGAAGCAAGGTCGGAAAATTGGATGGCTAGTACTCATGACTACCCATTTCAACCAAATATTGATGATGAACATGTAGACCTCAATGCACTTTCTTCTTTTCTGAATGCAGCAGATGATGATGATCACGATTGGATCATTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

297

Amino Acids

33.75

Weight (kDa)

5.37

Isoelectric Point (pI)

50.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 14 - 61 5.5e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 17 - 75 8e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 67 - 112 7.6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 71 - 121 8.5e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017380)

Species Orthologous Gene IDs
malus_domestica MD02G1087700.v1.1 MD15G1215400.v1.1
prunus_persica Prupe.7G201700_v2.0.a1 Prupe.7G201800_v2.0.a1
pyrus_communis pycom02g07050
rosa_chinensis RchiOBHm_Chr2g0094481
rosa_laevigata RLG00000016494
rosa_multiflora Rmu_sc0004359.1_g000049
rosa_roxburghii Rroxscaffold_2G00147140
rosa_samantha Rh2AG092400 Rh2BG092600 Rh2CG095100 Rh2DG091400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 436
Acc36I ACCTGC 1 cut(s) 436
AccI GTMKAC 2 cut(s) 53, 822
AccII CGCG 1 cut(s) 581
AciI CCGC 3 cut(s) 147, 295, 579
AclWI GGATC 1 cut(s) 887
AcoI YGGCCR 1 cut(s) 744
AcsI RAATTY 1 cut(s) 592
AcuI CTGAAG 3 cut(s) 237, 558, 579
AfaI GTAC 1 cut(s) 778
AfiI CCNNNNNNNGG 1 cut(s) 753
AflIII ACRYGT 1 cut(s) 817
AgeI ACCGGT 2 cut(s) 141, 261
AgsI TTSAA 3 cut(s) 139, 653, 797
AjnI CCWGG 1 cut(s) 289
AleI CACNNNNGTG 1 cut(s) 485
AluBI AGCT 4 cut(s) 131, 250, 428, 727
AluI AGCT 4 cut(s) 131, 250, 428, 727
Alw21I GWGCWC 1 cut(s) 482
Alw26I GTCTC 3 cut(s) 108, 273, 438
Alw44I GTGCAC 1 cut(s) 478
AlwI GGATC 1 cut(s) 887
Ama87I CYCGRG 1 cut(s) 565
AoxI GGCC 2 cut(s) 185, 744
ApaLI GTGCAC 1 cut(s) 478
ApeKI GCWGC 2 cut(s) 415, 854
ApoI RAATTY 1 cut(s) 592
AsiGI ACCGGT 2 cut(s) 141, 261
Asp700I GAANNNNTTC 2 cut(s) 456, 488
AspLEI GCGC 1 cut(s) 583
AsuC2I CCSGG 3 cut(s) 280, 566, 567
AsuHPI GGTGA 1 cut(s) 67
AsuII TTCGAA 1 cut(s) 460
AvaI CYCGRG 1 cut(s) 565
BaeGI GKGCMC 1 cut(s) 482
BbsI GAAGAC 1 cut(s) 231
Bbv12I GWGCWC 1 cut(s) 482
BbvI GCAGC 2 cut(s) 427, 866
BccI CCATC 5 cut(s) 102, 162, 505, 710, 763
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 868
BcnI CCSGG 3 cut(s) 280, 566, 567
BcoDI GTCTC 3 cut(s) 108, 273, 438
BfaI CTAG 1 cut(s) 774
BfuAI ACCTGC 1 cut(s) 436
BisI GCNGC 3 cut(s) 416, 579, 855
BlsI GCNGC 3 cut(s) 417, 580, 856
BmcAI AGTACT 1 cut(s) 778
Bme1390I CCNGG 4 cut(s) 280, 291, 566, 567
BmeT110I CYCGRG 1 cut(s) 565
BmiI GGNNCC 1 cut(s) 721
BmrFI CCNGG 4 cut(s) 280, 291, 566, 567
BpiI GAAGAC 1 cut(s) 231
Bpu14I TTCGAA 1 cut(s) 460
BpuEI CTTGAG 1 cut(s) 749
BpuMI CCSGG 3 cut(s) 280, 566, 567
BsaBI GATNNNNATC 1 cut(s) 867
BsaI GGTCTC 2 cut(s) 108, 273
BsaJI CCNNGG 2 cut(s) 290, 565
BsaWI WCCGGW 2 cut(s) 141, 261
Bsc4I CCNNNNNNNGG 1 cut(s) 753
Bse118I RCCGGY 2 cut(s) 141, 261
Bse1I ACTGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 273
Bse8I GATNNNNATC 1 cut(s) 867
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 2 cut(s) 290, 565
BseGI GGATG 2 cut(s) 718, 774
BseJI GATNNNNATC 1 cut(s) 867
BseLI CCNNNNNNNGG 1 cut(s) 753
BseMI GCAATG 1 cut(s) 273
BseMII CTCAG 3 cut(s) 173, 420, 449
BseNI ACTGG 1 cut(s) 326
BseRI GAGGAG 1 cut(s) 57
BseSI GKGCMC 1 cut(s) 482
BseXI GCAGC 2 cut(s) 427, 866
BseYI CCCAGC 1 cut(s) 131
Bsh1236I CGCG 1 cut(s) 581
BshFI GGCC 2 cut(s) 187, 746
BshTI ACCGGT 2 cut(s) 141, 261
BsiHKAI GWGCWC 1 cut(s) 482
BsiHKCI CYCGRG 1 cut(s) 565
BsiSI CCGG 4 cut(s) 142, 262, 279, 566
BslFI GGGAC 1 cut(s) 548
BslI CCNNNNNNNGG 1 cut(s) 753
BsmAI GTCTC 3 cut(s) 108, 273, 438
BsmFI GGGAC 1 cut(s) 548
BsmI GAATGC 1 cut(s) 856
BsnI GGCC 2 cut(s) 187, 746
Bso31I GGTCTC 2 cut(s) 108, 273
BsoBI CYCGRG 1 cut(s) 565
Bsp119I TTCGAA 1 cut(s) 460
Bsp1286I GDGCHC 1 cut(s) 482
Bsp143I GATC 7 cut(s) 64, 309, 344, 407, 700, 868, 879
BspACI CCGC 3 cut(s) 147, 295, 579
BspANI GGCC 2 cut(s) 187, 746
BspCNI CTCAG 3 cut(s) 174, 421, 448
BspFNI CGCG 1 cut(s) 581
BspHI TCATGA 2 cut(s) 694, 781
BspLI GGNNCC 1 cut(s) 721
BspMI ACCTGC 1 cut(s) 436
BspPI GGATC 1 cut(s) 887
BspT104I TTCGAA 1 cut(s) 460
BspTNI GGTCTC 2 cut(s) 108, 273
BsrDI GCAATG 1 cut(s) 273
BsrFI RCCGGY 2 cut(s) 141, 261
BsrI ACTGG 1 cut(s) 326
BssAI RCCGGY 2 cut(s) 141, 261
BssECI CCNNGG 2 cut(s) 290, 565
BssMI GATC 7 cut(s) 64, 309, 344, 407, 700, 868, 879
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 692
Bst6I CTCTTC 1 cut(s) 146
BstBI TTCGAA 1 cut(s) 460
BstDEI CTNAG 4 cut(s) 164, 182, 429, 435
BstF5I GGATG 2 cut(s) 718, 774
BstFNI CGCG 1 cut(s) 581
BstHHI GCGC 1 cut(s) 583
BstKTI GATC 7 cut(s) 67, 312, 347, 410, 703, 871, 882
BstMAI GTCTC 3 cut(s) 108, 273, 438
BstMBI GATC 7 cut(s) 64, 309, 344, 407, 700, 868, 879
BstNI CCWGG 1 cut(s) 291
BstNSI RCATGY 2 cut(s) 649, 821
BstSCI CCNGG 4 cut(s) 278, 289, 564, 565
BstSLI GKGCMC 1 cut(s) 482
BstUI CGCG 1 cut(s) 581
BstV1I GCAGC 2 cut(s) 427, 866
BstV2I GAAGAC 1 cut(s) 231
BsuRI GGCC 2 cut(s) 187, 746
BtsCI GGATG 2 cut(s) 718, 774
BveI ACCTGC 1 cut(s) 436
CciI TCATGA 2 cut(s) 694, 781
CfoI GCGC 1 cut(s) 583
Cfr10I RCCGGY 2 cut(s) 141, 261
Cfr9I CCCGGG 1 cut(s) 565
Csp6I GTAC 1 cut(s) 777
CspAI ACCGGT 2 cut(s) 141, 261
CviAII CATG 6 cut(s) 15, 48, 646, 695, 782, 818
CviJI RGCY 9 cut(s) 131, 187, 250, 428, 578, 722, 727, 746, 773
CviKI_1 RGCY 9 cut(s) 131, 187, 250, 428, 578, 722, 727, 746, 773
CviQI GTAC 1 cut(s) 777
DdeI CTNAG 4 cut(s) 164, 182, 429, 435
DpnI GATC 7 cut(s) 66, 311, 346, 409, 702, 870, 881
DpnII GATC 7 cut(s) 64, 309, 344, 407, 700, 868, 879
EaeI YGGCCR 1 cut(s) 744
Eam1104I CTCTTC 1 cut(s) 146
EarI CTCTTC 1 cut(s) 146
EciI GGCGGA 1 cut(s) 310
Eco147I AGGCCT 1 cut(s) 187
Eco31I GGTCTC 2 cut(s) 108, 273
Eco32I GATATC 1 cut(s) 193
Eco57I CTGAAG 3 cut(s) 237, 558, 579
Eco88I CYCGRG 1 cut(s) 565
EcoRI GAATTC 1 cut(s) 592
EcoRII CCWGG 1 cut(s) 289
EcoRV GATATC 1 cut(s) 193
FaeI CATG 6 cut(s) 18, 51, 649, 698, 785, 821
FaqI GGGAC 1 cut(s) 548
FatI CATG 6 cut(s) 14, 47, 645, 694, 781, 817
FauI CCCGC 1 cut(s) 140
FauNDI CATATG 1 cut(s) 94
FbaI TGATCA 1 cut(s) 868
FblI GTMKAC 2 cut(s) 53, 822
Fnu4HI GCNGC 3 cut(s) 416, 579, 855
FokI GGATG 2 cut(s) 725, 781
Fsp4HI GCNGC 3 cut(s) 416, 579, 855
FspBI CTAG 1 cut(s) 774
GlaI GCGC 1 cut(s) 582
GluI GCNGC 3 cut(s) 416, 579, 855
GsaI CCCAGC 1 cut(s) 135
HaeIII GGCC 2 cut(s) 187, 746
HapII CCGG 4 cut(s) 142, 262, 279, 566
HhaI GCGC 1 cut(s) 583
Hin1II CATG 6 cut(s) 18, 51, 649, 698, 785, 821
Hin6I GCGC 1 cut(s) 581
HinP1I GCGC 1 cut(s) 581
HindIII AAGCTT 2 cut(s) 248, 725
HinfI GANTC 2 cut(s) 431, 457
HpaII CCGG 4 cut(s) 142, 262, 279, 566
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 4 cut(s) 54, 386, 480, 823
Hpy188I TCNGA 8 cut(s) 41, 183, 239, 438, 547, 643, 760, 849
Hpy188III TCNNGA 5 cut(s) 196, 313, 695, 782, 872
Hpy8I GTNNAC 4 cut(s) 54, 386, 480, 823
HpyAV CCTTC 5 cut(s) 23, 95, 128, 478, 641
HpyCH4III ACNGT 1 cut(s) 692
HpyCH4IV ACGT 1 cut(s) 84
HpyCH4V TGCA 9 cut(s) 159, 244, 339, 399, 480, 524, 673, 833, 854
HpyF3I CTNAG 4 cut(s) 164, 182, 429, 435
HpySE526I ACGT 1 cut(s) 84
Hsp92II CATG 6 cut(s) 18, 51, 649, 698, 785, 821
HspAI GCGC 1 cut(s) 581
Ksp22I TGATCA 1 cut(s) 868
Kzo9I GATC 7 cut(s) 64, 309, 344, 407, 700, 868, 879
LmnI GCTCC 4 cut(s) 44, 358, 586, 719
Lsp1109I GCAGC 2 cut(s) 427, 866
MaeI CTAG 1 cut(s) 774
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 526
MalI GATC 7 cut(s) 66, 311, 346, 409, 702, 870, 881
MboI GATC 7 cut(s) 64, 309, 344, 407, 700, 868, 879
MboII GAAGA 9 cut(s) 74, 163, 230, 233, 236, 342, 564, 710, 831
MhlI GDGCHC 1 cut(s) 482
MluCI AATT 4 cut(s) 175, 231, 592, 763
MlyI GAGTC 1 cut(s) 440
MmeI TCCRAC 1 cut(s) 738
MnlI CCTC 8 cut(s) 35, 83, 132, 177, 194, 367, 724, 836
MroXI GAANNNNTTC 2 cut(s) 456, 488
MseI TTAA 3 cut(s) 474, 740, 889
MslI CAYNNNNRTG 1 cut(s) 485
MspA1I CMGCKG 1 cut(s) 428
MspI CCGG 4 cut(s) 142, 262, 279, 566
MspR9I CCNGG 4 cut(s) 280, 291, 566, 567
Mva1269I GAATGC 1 cut(s) 856
MvaI CCWGG 1 cut(s) 291
MvnI CGCG 1 cut(s) 581
NciI CCSGG 3 cut(s) 280, 566, 567
NdeI CATATG 1 cut(s) 94
NdeII GATC 7 cut(s) 64, 309, 344, 407, 700, 868, 879
NlaIII CATG 6 cut(s) 18, 51, 649, 698, 785, 821
NlaIV GGNNCC 1 cut(s) 721
NspI RCATGY 2 cut(s) 649, 821
NspV TTCGAA 1 cut(s) 460
OliI CACNNNNGTG 1 cut(s) 485
PagI TCATGA 2 cut(s) 694, 781
PaqCI CACCTGC 1 cut(s) 436
PceI AGGCCT 1 cut(s) 187
PciI ACATGT 1 cut(s) 817
PctI GAATGC 1 cut(s) 856
PdmI GAANNNNTTC 2 cut(s) 456, 488
PfeI GAWTC 1 cut(s) 457
PinAI ACCGGT 2 cut(s) 141, 261
PkrI GCNGC 3 cut(s) 417, 580, 856
PleI GAGTC 1 cut(s) 439
PpsI GAGTC 1 cut(s) 439
PscI ACATGT 1 cut(s) 817
Psp6I CCWGG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 1 cut(s) 721
PvuII CAGCTG 1 cut(s) 428
RsaI GTAC 1 cut(s) 778
RsaNI GTAC 1 cut(s) 777
RseI CAYNNNNRTG 1 cut(s) 485
SaqAI TTAA 3 cut(s) 474, 740, 889
SatI GCNGC 3 cut(s) 416, 579, 855
Sau3AI GATC 7 cut(s) 64, 309, 344, 407, 700, 868, 879
ScaI AGTACT 1 cut(s) 778
SchI GAGTC 1 cut(s) 440
ScrFI CCNGG 4 cut(s) 280, 291, 566, 567
SduI GDGCHC 1 cut(s) 482
SfuI TTCGAA 1 cut(s) 460
SmaI CCCGGG 1 cut(s) 567
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 728
SmoI CTYRAG 1 cut(s) 728
Sse9I AATT 4 cut(s) 175, 231, 592, 763
SseBI AGGCCT 1 cut(s) 187
SsiI CCGC 3 cut(s) 147, 295, 579
SspI AATATT 1 cut(s) 805
SspMI CTAG 1 cut(s) 774
StuI AGGCCT 1 cut(s) 187
StyD4I CCNGG 4 cut(s) 278, 289, 564, 565
TaaI ACNGT 1 cut(s) 692
TaiI ACGT 1 cut(s) 87
TaqI TCGA 2 cut(s) 460, 618
TasI AATT 4 cut(s) 175, 231, 592, 763
TatI WGTACW 1 cut(s) 776
TauI GCSGC 1 cut(s) 581
TfiI GAWTC 1 cut(s) 457
Tru1I TTAA 3 cut(s) 474, 740, 889
Tru9I TTAA 3 cut(s) 474, 740, 889
TseI GCWGC 2 cut(s) 415, 854
TspDTI ATGAA 4 cut(s) 342, 481, 711, 828
TspMI CCCGGG 1 cut(s) 565
VneI GTGCAC 1 cut(s) 478
XapI RAATTY 1 cut(s) 592
XceI RCATGY 2 cut(s) 649, 821
XmaI CCCGGG 1 cut(s) 565
XmiI GTMKAC 2 cut(s) 53, 822
XmnI GAANNNNTTC 2 cut(s) 456, 488
XspI CTAG 1 cut(s) 774
ZrmI AGTACT 1 cut(s) 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.