Prupe.7G201800_v2.0.a1
MYB Family

transcription

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0017380
Physical Location & Seq
Reverse (-)
18799473 .. 18800653
1181 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G201800.1

Sequence Viewer

Length: 771 bp
ATGGGAAGAAAACCATGCTGTGATAAAGAAGGGCTAAACAGGGGAGCATGGTCTGCTTGGGAAGACAAAACTCTCACCAATTACATTGAAATACATGGAGAAGGAAAATGGAGAGACCTTCCTAGAAGAGCTGGGTTAAAGCGGTGCGGGAAGAGTTGCAGACTGCGATGGCTGAATTATCTTAGGCCAGATATTAAGAGAGGTAACATTTCGGCTGAAGAAGAAGAGCTCATTTTCAGACTACACAAGCTTCTTGGAAACAGGTGGTCACTCATCGCTGGAAGATTGCCGGGACGAACTGACAACGAAATCAAGAACTACTGGAACACCAATCTGAGCAAGAGAGTAGAGCAAGCTTGCTCAAAACAAGACACGAAAAAATCAGTGTCTCAACAGGTCCAGGTGATTCGAACAAAAGCATTTAAGTGCAAGAACGTTGTCGTTCCATCACATTTGGATAATGGTCATGATGATGATCAAATGGCTGACAGATCAAATAACGTGGATCCTGGTTTTCTAATGGATTTTGATACCAACGACCTGTTCATATCGGACCAACTGCTAAACTCGGATTTCCACCAAGCCCAAAGCAGTGGATGCGATCAAGACTTGGTGGATGGAACGTCCAAGATTGAAGATTTTTTAATGGCTACCGATGATCATGATCATAACCCAATATTTCAACCAAGTGATCTTGAAGAACCTGTAGACCTCAATGCACTTTCATGCTTTCTGAATTCAGAAGATGGTGGTCAGTGGATCATTAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

257

Amino Acids

29.27

Weight (kDa)

5.54

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017380)

Species Orthologous Gene IDs
malus_domestica MD02G1087700.v1.1 MD15G1215400.v1.1
prunus_persica Prupe.7G201700_v2.0.a1 Prupe.7G201800_v2.0.a1
pyrus_communis pycom02g07050
rosa_chinensis RchiOBHm_Chr2g0094481
rosa_laevigata RLG00000016494
rosa_multiflora Rmu_sc0004359.1_g000049
rosa_roxburghii Rroxscaffold_2G00147140
rosa_samantha Rh2AG092400 Rh2BG092600 Rh2CG095100 Rh2DG091400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 708
AciI CCGC 2 cut(s) 142, 147
AclI AACGTT 1 cut(s) 435
AclWI GGATC 3 cut(s) 500, 513, 767
AcsI RAATTY 1 cut(s) 736
AcuI CTGAAG 1 cut(s) 237
AgsI TTSAA 4 cut(s) 89, 635, 683, 698
AjnI CCWGG 2 cut(s) 399, 508
AjuI GAANNNNNNNTTGG 2 cut(s) 527, 559
AluBI AGCT 4 cut(s) 131, 229, 250, 356
AluI AGCT 4 cut(s) 131, 229, 250, 356
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 2 cut(s) 108, 393
AlwI GGATC 3 cut(s) 500, 513, 767
AoxI GGCC 1 cut(s) 185
ApoI RAATTY 1 cut(s) 736
AspS9I GGNCC 2 cut(s) 397, 553
AsuC2I CCSGG 1 cut(s) 291
AsuHPI GGTGA 2 cut(s) 67, 415
AsuII TTCGAA 1 cut(s) 409
AvaII GGWCC 2 cut(s) 397, 553
BamHI GGATCC 1 cut(s) 505
BanII GRGCYC 1 cut(s) 231
BbsI GAAGAC 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 231
BccI CCATC 4 cut(s) 162, 454, 611, 740
BciT130I CCWGG 2 cut(s) 401, 510
BclI TGATCA 3 cut(s) 475, 658, 664
BcnI CCSGG 1 cut(s) 291
BcoDI GTCTC 2 cut(s) 108, 393
BfaI CTAG 1 cut(s) 123
BfmI CTRYAG 1 cut(s) 705
Bme1390I CCNGG 3 cut(s) 291, 401, 510
Bme18I GGWCC 2 cut(s) 397, 553
BmgT120I GGNCC 2 cut(s) 397, 553
BmiI GGNNCC 1 cut(s) 507
BmrFI CCNGG 3 cut(s) 291, 401, 510
BmsI GCATC 1 cut(s) 587
BpiI GAAGAC 1 cut(s) 69
Bpu14I TTCGAA 1 cut(s) 409
BpuMI CCSGG 1 cut(s) 291
BsaBI GATNNNNATC 2 cut(s) 474, 663
BsaI GGTCTC 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 326
Bse8I GATNNNNATC 2 cut(s) 474, 663
BseBI CCWGG 2 cut(s) 401, 510
BseGI GGATG 2 cut(s) 602, 622
BseJI GATNNNNATC 2 cut(s) 474, 663
BseMII CTCAG 1 cut(s) 326
BseNI ACTGG 1 cut(s) 326
BseYI CCCAGC 1 cut(s) 131
BshFI GGCC 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 290
BslFI GGGAC 1 cut(s) 306
BsmAI GTCTC 2 cut(s) 108, 393
BsmFI GGGAC 1 cut(s) 306
BsnI GGCC 1 cut(s) 187
Bso31I GGTCTC 1 cut(s) 108
Bsp119I TTCGAA 1 cut(s) 409
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 8 cut(s) 475, 491, 505, 601, 658, 664, 691, 759
BspACI CCGC 2 cut(s) 142, 147
BspANI GGCC 1 cut(s) 187
BspCNI CTCAG 1 cut(s) 327
BspHI TCATGA 2 cut(s) 466, 661
BspLI GGNNCC 1 cut(s) 507
BspPI GGATC 3 cut(s) 500, 513, 767
BspQI GCTCTTC 2 cut(s) 121, 219
BspT104I TTCGAA 1 cut(s) 409
BspTNI GGTCTC 1 cut(s) 108
BsrI ACTGG 1 cut(s) 326
BssMI GATC 8 cut(s) 475, 491, 505, 601, 658, 664, 691, 759
Bst2UI CCWGG 2 cut(s) 401, 510
Bst6I CTCTTC 3 cut(s) 121, 146, 219
BstAPI GCANNNNNTGC 2 cut(s) 53, 597
BstBI TTCGAA 1 cut(s) 409
BstC8I GCNNGC 2 cut(s) 354, 358
BstDEI CTNAG 2 cut(s) 182, 335
BstF5I GGATG 2 cut(s) 602, 622
BstKTI GATC 8 cut(s) 478, 494, 508, 604, 661, 667, 694, 762
BstMAI GTCTC 2 cut(s) 108, 393
BstMBI GATC 8 cut(s) 475, 491, 505, 601, 658, 664, 691, 759
BstMWI GCNNNNNNNGC 2 cut(s) 53, 597
BstNI CCWGG 2 cut(s) 401, 510
BstSCI CCNGG 3 cut(s) 289, 399, 508
BstSFI CTRYAG 1 cut(s) 705
BstV2I GAAGAC 1 cut(s) 69
BstX2I RGATCY 1 cut(s) 505
BstXI CCANNNNNNTGG 1 cut(s) 593
BstYI RGATCY 1 cut(s) 505
BsuRI GGCC 1 cut(s) 187
BtgZI GCGATG 2 cut(s) 181, 259
BtsCI GGATG 2 cut(s) 602, 622
BtsI GCAGTG 1 cut(s) 598
BtsIMutI CAGTG 3 cut(s) 390, 598, 761
Cac8I GCNNGC 2 cut(s) 354, 358
CciI TCATGA 2 cut(s) 466, 661
Cfr13I GGNCC 2 cut(s) 397, 553
CspCI CAANNNNNGTGG 2 cut(s) 483, 518
CviAII CATG 6 cut(s) 15, 48, 95, 467, 662, 726
DdeI CTNAG 2 cut(s) 182, 335
DpnI GATC 8 cut(s) 477, 493, 507, 603, 660, 666, 693, 761
DpnII GATC 8 cut(s) 475, 491, 505, 601, 658, 664, 691, 759
Eam1104I CTCTTC 3 cut(s) 121, 146, 219
EarI CTCTTC 3 cut(s) 121, 146, 219
Ecl136II GAGCTC 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 231
Eco31I GGTCTC 1 cut(s) 108
Eco47I GGWCC 2 cut(s) 397, 553
Eco53kI GAGCTC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 237
EcoICRI GAGCTC 1 cut(s) 229
EcoRI GAATTC 1 cut(s) 736
EcoRII CCWGG 2 cut(s) 399, 508
EcoT38I GRGCYC 1 cut(s) 231
FaeI CATG 6 cut(s) 18, 51, 98, 470, 665, 729
FaiI YATR 8 cut(s) 16, 49, 96, 468, 548, 663, 669, 727
FaqI GGGAC 1 cut(s) 306
FatI CATG 6 cut(s) 14, 47, 94, 466, 661, 725
FauI CCCGC 1 cut(s) 140
FbaI TGATCA 3 cut(s) 475, 658, 664
FblI GTMKAC 1 cut(s) 708
FokI GGATG 2 cut(s) 609, 629
FriOI GRGCYC 1 cut(s) 231
FspBI CTAG 1 cut(s) 123
GsaI CCCAGC 1 cut(s) 135
HaeIII GGCC 1 cut(s) 187
HapII CCGG 1 cut(s) 290
Hin1II CATG 6 cut(s) 18, 51, 98, 470, 665, 729
HindIII AAGCTT 2 cut(s) 248, 354
HinfI GANTC 1 cut(s) 406
HpaII CCGG 1 cut(s) 290
HphI GGTGA 2 cut(s) 67, 415
Hpy166II GTNNAC 1 cut(s) 709
Hpy188I TCNGA 6 cut(s) 239, 336, 553, 571, 735, 742
Hpy188III TCNNGA 5 cut(s) 313, 467, 605, 662, 695
Hpy8I GTNNAC 1 cut(s) 709
HpyAV CCTTC 3 cut(s) 23, 95, 128
HpyCH4IV ACGT 3 cut(s) 435, 501, 623
HpyCH4V TGCA 3 cut(s) 159, 429, 719
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 597
HpyF3I CTNAG 2 cut(s) 182, 335
HpySE526I ACGT 3 cut(s) 435, 501, 623
Hsp92II CATG 6 cut(s) 18, 51, 98, 470, 665, 729
Ksp22I TGATCA 3 cut(s) 475, 658, 664
Kzo9I GATC 8 cut(s) 475, 491, 505, 601, 658, 664, 691, 759
LguI GCTCTTC 2 cut(s) 121, 219
LmnI GCTCC 1 cut(s) 44
LweI GCATC 1 cut(s) 587
MaeI CTAG 1 cut(s) 123
MaeII ACGT 3 cut(s) 435, 501, 623
MaeIII GTNAC 2 cut(s) 203, 267
MalI GATC 8 cut(s) 477, 493, 507, 603, 660, 666, 693, 761
MboI GATC 8 cut(s) 475, 491, 505, 601, 658, 664, 691, 759
MflI RGATCY 1 cut(s) 505
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 3 cut(s) 79, 175, 736
MnlI CCTC 2 cut(s) 194, 722
MseI TTAA 4 cut(s) 137, 195, 423, 644
MslI CAYNNNNRTG 3 cut(s) 424, 471, 724
MspI CCGG 1 cut(s) 290
MspR9I CCNGG 3 cut(s) 291, 401, 510
MvaI CCWGG 2 cut(s) 401, 510
MwoI GCNNNNNNNGC 2 cut(s) 53, 597
NciI CCSGG 1 cut(s) 291
NdeII GATC 8 cut(s) 475, 491, 505, 601, 658, 664, 691, 759
NlaIII CATG 6 cut(s) 18, 51, 98, 470, 665, 729
NlaIV GGNNCC 1 cut(s) 507
NmuCI GTSAC 1 cut(s) 267
NspV TTCGAA 1 cut(s) 409
PagI TCATGA 2 cut(s) 466, 661
PciSI GCTCTTC 2 cut(s) 121, 219
PfeI GAWTC 1 cut(s) 406
Psp124BI GAGCTC 1 cut(s) 231
Psp1406I AACGTT 1 cut(s) 435
Psp6I CCWGG 2 cut(s) 399, 508
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 2 cut(s) 399, 508
PspN4I GGNNCC 1 cut(s) 507
PspPI GGNCC 2 cut(s) 397, 553
PsuI RGATCY 1 cut(s) 505
RseI CAYNNNNRTG 3 cut(s) 424, 471, 724
SacI GAGCTC 1 cut(s) 231
SapI GCTCTTC 2 cut(s) 121, 219
SaqAI TTAA 4 cut(s) 137, 195, 423, 644
Sau3AI GATC 8 cut(s) 475, 491, 505, 601, 658, 664, 691, 759
Sau96I GGNCC 2 cut(s) 397, 553
ScrFI CCNGG 3 cut(s) 291, 401, 510
SduI GDGCHC 1 cut(s) 231
SfaNI GCATC 1 cut(s) 587
SfcI CTRYAG 1 cut(s) 705
SfuI TTCGAA 1 cut(s) 409
SinI GGWCC 2 cut(s) 397, 553
SmiMI CAYNNNNRTG 3 cut(s) 424, 471, 724
Sse9I AATT 3 cut(s) 79, 175, 736
SsiI CCGC 2 cut(s) 142, 147
SspI AATATT 1 cut(s) 678
SspMI CTAG 1 cut(s) 123
SstI GAGCTC 1 cut(s) 231
StyD4I CCNGG 3 cut(s) 289, 399, 508
TaiI ACGT 3 cut(s) 438, 504, 626
TaqI TCGA 1 cut(s) 409
TasI AATT 3 cut(s) 79, 175, 736
TfiI GAWTC 1 cut(s) 406
Tru1I TTAA 4 cut(s) 137, 195, 423, 644
Tru9I TTAA 4 cut(s) 137, 195, 423, 644
TscAI CASTG 3 cut(s) 390, 598, 761
TseFI GTSAC 1 cut(s) 267
Tsp45I GTSAC 1 cut(s) 267
TspDTI ATGAA 2 cut(s) 535, 714
TspRI CASTG 3 cut(s) 390, 598, 761
VpaK11BI GGWCC 2 cut(s) 397, 553
XapI RAATTY 1 cut(s) 736
XmiI GTMKAC 1 cut(s) 708
XspI CTAG 1 cut(s) 123
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.