Rroxscaffold_2G00147140
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0017380
Physical Location & Seq
Reverse (-)
85058277 .. 85059598
1322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00147140.1

Sequence Viewer

Length: 975 bp
ATGCACAGTACTTGTGTCAGTCAGTACCGGAAGGCTGAACTAAGTTGTTCATTGATTTCCCTCAAGGTCTCAGAAATTTTGAAGATGGGGAGAAAACCATGCTGTGAAAAGGAAGGGGTCATCAGAGGAGCGTGGTCTACAATGGAAGATCATATCCTCACCGACTACGTTCTAACATATGGAGAAGGGAGATGGAGAGACCTTCCTCAAAAAGCTGGGTTGAACCGGTGCGGGAAGAGTTGCAGACTAAGATGGATAAATTATCTTAGGCCTGATATCAAGAGAGGCAACATTTCTGCTGCAGAAGAAGATCTAATTATCAGACTGCATAAGCTTCTGGGAAACCGGTGGTCTCTAATTGCCGGGAGACTGCCAGGGCGGACAGACAACGAGATCAAGAACTACTGGAACACGACTTTATGCAAGAGATCATCTTCATTGGAGCAAAATTATGAGGAGGAAGCGAGTAAACTGAAAAAATGCAAAGCGAGATCGAAGCAGCGAGTATCAGCTGAGTCTCAGAAAAAGCAGGTGGAGGTGATTCGAACAAAAGCAGTCAAGTGCACTAAGGTTTTCATTCCATCACATCTACATAGTTATACTTATGCAGTAACTAATTCTGCTAGTTCGGAGTATTCTACTGAAGTCCCGGGTGCTTCAGCCGCGCAGGAGCAGAATTCTTGCGGTCTTGTAATGGATTTCGACATCAATGACCTTCTCATATCGGACATGCTTGAAAGTAGTAAAGATTTCCTGCAACACCAAGTCAATGAATGTCATGATGATCAGATGGGGGATGATGGAGCCAAGCTTGAGGATTTGTTAATGGCCGAAGCAAGGTCGGAAAATTGGATGGCTAGTACTCATGACTACCCATTTCAACCAAATATTGATGATGAACATGTAGACCTCAATGCACTTTCTTCTTTTCTGAATGCAGCAGATGATGGTGATCACGACTGGATCATTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

324

Amino Acids

36.73

Weight (kDa)

5.96

Isoelectric Point (pI)

52.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 42 - 89 1.8e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 45 - 104 9e-10 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 95 - 140 1e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 99 - 144 4.8e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017380)

Species Orthologous Gene IDs
malus_domestica MD02G1087700.v1.1 MD15G1215400.v1.1
prunus_persica Prupe.7G201700_v2.0.a1 Prupe.7G201800_v2.0.a1
pyrus_communis pycom02g07050
rosa_chinensis RchiOBHm_Chr2g0094481
rosa_laevigata RLG00000016494
rosa_multiflora Rmu_sc0004359.1_g000049
rosa_roxburghii Rroxscaffold_2G00147140
rosa_samantha Rh2AG092400 Rh2BG092600 Rh2CG095100 Rh2DG091400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 520
Acc36I ACCTGC 1 cut(s) 520
AccI GTMKAC 2 cut(s) 137, 906
AccII CGCG 1 cut(s) 665
AciI CCGC 4 cut(s) 231, 379, 663, 684
AclWI GGATC 1 cut(s) 971
AcoI YGGCCR 1 cut(s) 828
AcsI RAATTY 2 cut(s) 75, 676
AcuI CTGAAG 2 cut(s) 642, 663
AfaI GTAC 3 cut(s) 10, 26, 862
AfiI CCNNNNNNNGG 1 cut(s) 837
AflIII ACRYGT 1 cut(s) 901
AgeI ACCGGT 2 cut(s) 225, 345
AgsI TTSAA 4 cut(s) 82, 223, 737, 881
AjnI CCWGG 1 cut(s) 373
AluBI AGCT 4 cut(s) 215, 334, 512, 811
AluI AGCT 4 cut(s) 215, 334, 512, 811
Alw21I GWGCWC 1 cut(s) 566
Alw26I GTCTC 5 cut(s) 73, 192, 357, 361, 522
Alw44I GTGCAC 1 cut(s) 562
AlwI GGATC 1 cut(s) 971
Ama87I CYCGRG 1 cut(s) 649
AoxI GGCC 2 cut(s) 269, 828
ApaLI GTGCAC 1 cut(s) 562
ApeKI GCWGC 3 cut(s) 299, 499, 938
ApoI RAATTY 2 cut(s) 75, 676
AsiGI ACCGGT 2 cut(s) 225, 345
AspLEI GCGC 1 cut(s) 667
AsuC2I CCSGG 3 cut(s) 364, 650, 651
AsuHPI GGTGA 3 cut(s) 151, 550, 962
AsuII TTCGAA 1 cut(s) 544
AvaI CYCGRG 1 cut(s) 649
BaeGI GKGCMC 1 cut(s) 566
Bbv12I GWGCWC 1 cut(s) 566
BbvI GCAGC 3 cut(s) 286, 511, 950
BccI CCATC 8 cut(s) 79, 186, 246, 589, 784, 794, 847, 941
BciT130I CCWGG 1 cut(s) 375
BclI TGATCA 2 cut(s) 784, 952
BcnI CCSGG 3 cut(s) 364, 650, 651
BcoDI GTCTC 5 cut(s) 73, 192, 357, 361, 522
BfaI CTAG 2 cut(s) 624, 858
BfmI CTRYAG 1 cut(s) 300
BfuAI ACCTGC 1 cut(s) 520
BglII AGATCT 1 cut(s) 310
BisI GCNGC 4 cut(s) 300, 500, 663, 939
BlsI GCNGC 4 cut(s) 301, 501, 664, 940
BmcAI AGTACT 2 cut(s) 10, 862
Bme1390I CCNGG 4 cut(s) 364, 375, 650, 651
BmeT110I CYCGRG 1 cut(s) 649
BmiI GGNNCC 1 cut(s) 805
BmrFI CCNGG 4 cut(s) 364, 375, 650, 651
Bpu14I TTCGAA 1 cut(s) 544
BpuEI CTTGAG 2 cut(s) 47, 833
BpuMI CCSGG 3 cut(s) 364, 650, 651
BsaBI GATNNNNATC 1 cut(s) 951
BsaI GGTCTC 3 cut(s) 73, 192, 357
BsaJI CCNNGG 2 cut(s) 374, 649
BsaWI WCCGGW 3 cut(s) 27, 225, 345
Bsc4I CCNNNNNNNGG 1 cut(s) 837
Bse118I RCCGGY 2 cut(s) 225, 345
Bse1I ACTGG 2 cut(s) 410, 965
Bse8I GATNNNNATC 1 cut(s) 951
BseBI CCWGG 1 cut(s) 375
BseDI CCNNGG 2 cut(s) 374, 649
BseGI GGATG 2 cut(s) 802, 858
BseJI GATNNNNATC 1 cut(s) 951
BseLI CCNNNNNNNGG 1 cut(s) 837
BseMII CTCAG 3 cut(s) 84, 504, 533
BseNI ACTGG 2 cut(s) 410, 965
BseRI GAGGAG 2 cut(s) 141, 470
BseSI GKGCMC 1 cut(s) 566
BseXI GCAGC 3 cut(s) 286, 511, 950
BseYI CCCAGC 1 cut(s) 215
Bsh1236I CGCG 1 cut(s) 665
BshFI GGCC 2 cut(s) 271, 830
BshTI ACCGGT 2 cut(s) 225, 345
BsiHKAI GWGCWC 1 cut(s) 566
BsiHKCI CYCGRG 1 cut(s) 649
BsiSI CCGG 5 cut(s) 28, 226, 346, 363, 650
BslFI GGGAC 1 cut(s) 632
BslI CCNNNNNNNGG 1 cut(s) 837
BsmAI GTCTC 5 cut(s) 73, 192, 357, 361, 522
BsmFI GGGAC 1 cut(s) 632
BsmI GAATGC 1 cut(s) 940
BsnI GGCC 2 cut(s) 271, 830
Bso31I GGTCTC 3 cut(s) 73, 192, 357
BsoBI CYCGRG 1 cut(s) 649
Bsp119I TTCGAA 1 cut(s) 544
Bsp1286I GDGCHC 1 cut(s) 566
Bsp143I GATC 8 cut(s) 148, 310, 393, 428, 491, 784, 952, 963
BspACI CCGC 4 cut(s) 231, 379, 663, 684
BspANI GGCC 2 cut(s) 271, 830
BspCNI CTCAG 3 cut(s) 83, 505, 532
BspFNI CGCG 1 cut(s) 665
BspHI TCATGA 2 cut(s) 778, 865
BspLI GGNNCC 1 cut(s) 805
BspMAI CTGCAG 1 cut(s) 304
BspMI ACCTGC 1 cut(s) 520
BspPI GGATC 1 cut(s) 971
BspT104I TTCGAA 1 cut(s) 544
BspTNI GGTCTC 3 cut(s) 73, 192, 357
BsrFI RCCGGY 2 cut(s) 225, 345
BsrI ACTGG 2 cut(s) 410, 965
BssAI RCCGGY 2 cut(s) 225, 345
BssECI CCNNGG 2 cut(s) 374, 649
BssMI GATC 8 cut(s) 148, 310, 393, 428, 491, 784, 952, 963
Bst2UI CCWGG 1 cut(s) 375
Bst4CI ACNGT 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 230
BstBI TTCGAA 1 cut(s) 544
BstDEI CTNAG 7 cut(s) 41, 70, 248, 266, 513, 519, 567
BstF5I GGATG 2 cut(s) 802, 858
BstFNI CGCG 1 cut(s) 665
BstHHI GCGC 1 cut(s) 667
BstKTI GATC 8 cut(s) 151, 313, 396, 431, 494, 787, 955, 966
BstMAI GTCTC 5 cut(s) 73, 192, 357, 361, 522
BstMBI GATC 8 cut(s) 148, 310, 393, 428, 491, 784, 952, 963
BstMWI GCNNNNNNNGC 1 cut(s) 662
BstNI CCWGG 1 cut(s) 375
BstNSI RCATGY 2 cut(s) 733, 905
BstSCI CCNGG 4 cut(s) 362, 373, 648, 649
BstSFI CTRYAG 1 cut(s) 300
BstSLI GKGCMC 1 cut(s) 566
BstUI CGCG 1 cut(s) 665
BstV1I GCAGC 3 cut(s) 286, 511, 950
BstX2I RGATCY 1 cut(s) 310
BstYI RGATCY 1 cut(s) 310
BsuRI GGCC 2 cut(s) 271, 830
BtsCI GGATG 2 cut(s) 802, 858
BveI ACCTGC 1 cut(s) 520
CciI TCATGA 2 cut(s) 778, 865
CfoI GCGC 1 cut(s) 667
Cfr10I RCCGGY 2 cut(s) 225, 345
Cfr9I CCCGGG 1 cut(s) 649
Csp6I GTAC 3 cut(s) 9, 25, 861
CspAI ACCGGT 2 cut(s) 225, 345
CviAII CATG 5 cut(s) 99, 730, 779, 866, 902
CviQI GTAC 3 cut(s) 9, 25, 861
DdeI CTNAG 7 cut(s) 41, 70, 248, 266, 513, 519, 567
DpnI GATC 8 cut(s) 150, 312, 395, 430, 493, 786, 954, 965
DpnII GATC 8 cut(s) 148, 310, 393, 428, 491, 784, 952, 963
EaeI YGGCCR 1 cut(s) 828
Eam1104I CTCTTC 1 cut(s) 230
EarI CTCTTC 1 cut(s) 230
EciI GGCGGA 1 cut(s) 394
Eco147I AGGCCT 1 cut(s) 271
Eco31I GGTCTC 3 cut(s) 73, 192, 357
Eco32I GATATC 1 cut(s) 277
Eco57I CTGAAG 2 cut(s) 642, 663
Eco88I CYCGRG 1 cut(s) 649
EcoRI GAATTC 1 cut(s) 676
EcoRII CCWGG 1 cut(s) 373
EcoRV GATATC 1 cut(s) 277
FaeI CATG 5 cut(s) 102, 733, 782, 869, 905
FaqI GGGAC 1 cut(s) 632
FatI CATG 5 cut(s) 98, 729, 778, 865, 901
FauI CCCGC 1 cut(s) 224
FauNDI CATATG 1 cut(s) 178
FbaI TGATCA 2 cut(s) 784, 952
FblI GTMKAC 2 cut(s) 137, 906
Fnu4HI GCNGC 4 cut(s) 300, 500, 663, 939
FokI GGATG 2 cut(s) 809, 865
Fsp4HI GCNGC 4 cut(s) 300, 500, 663, 939
FspBI CTAG 2 cut(s) 624, 858
GlaI GCGC 1 cut(s) 666
GluI GCNGC 4 cut(s) 300, 500, 663, 939
GsaI CCCAGC 1 cut(s) 219
HaeIII GGCC 2 cut(s) 271, 830
HapII CCGG 5 cut(s) 28, 226, 346, 363, 650
HhaI GCGC 1 cut(s) 667
Hin1II CATG 5 cut(s) 102, 733, 782, 869, 905
Hin6I GCGC 1 cut(s) 665
HinP1I GCGC 1 cut(s) 665
HindIII AAGCTT 2 cut(s) 332, 809
HinfI GANTC 2 cut(s) 515, 541
HpaII CCGG 5 cut(s) 28, 226, 346, 363, 650
HphI GGTGA 3 cut(s) 151, 550, 962
Hpy166II GTNNAC 4 cut(s) 138, 470, 564, 907
Hpy188I TCNGA 9 cut(s) 73, 125, 323, 522, 631, 727, 789, 844, 933
Hpy188III TCNNGA 5 cut(s) 280, 397, 779, 866, 956
Hpy8I GTNNAC 4 cut(s) 138, 470, 564, 907
HpyAV CCTTC 5 cut(s) 25, 107, 179, 212, 725
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4IV ACGT 1 cut(s) 168
HpyF10VI GCNNNNNNNGC 1 cut(s) 662
HpyF3I CTNAG 7 cut(s) 41, 70, 248, 266, 513, 519, 567
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 5 cut(s) 102, 733, 782, 869, 905
HspAI GCGC 1 cut(s) 665
Ksp22I TGATCA 2 cut(s) 784, 952
Kzo9I GATC 8 cut(s) 148, 310, 393, 428, 491, 784, 952, 963
LmnI GCTCC 4 cut(s) 128, 442, 670, 803
Lsp1109I GCAGC 3 cut(s) 286, 511, 950
MaeI CTAG 2 cut(s) 624, 858
MaeII ACGT 1 cut(s) 168
MaeIII GTNAC 1 cut(s) 610
MalI GATC 8 cut(s) 150, 312, 395, 430, 493, 786, 954, 965
MboI GATC 8 cut(s) 148, 310, 393, 428, 491, 784, 952, 963
MboII GAAGA 7 cut(s) 94, 158, 247, 317, 320, 426, 915
MflI RGATCY 1 cut(s) 310
MhlI GDGCHC 1 cut(s) 566
MluCI AATT 8 cut(s) 75, 259, 315, 357, 448, 616, 676, 847
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 1 cut(s) 822
MseI TTAA 2 cut(s) 824, 973
MspA1I CMGCKG 1 cut(s) 512
MspI CCGG 5 cut(s) 28, 226, 346, 363, 650
MspR9I CCNGG 4 cut(s) 364, 375, 650, 651
Mva1269I GAATGC 1 cut(s) 940
MvaI CCWGG 1 cut(s) 375
MvnI CGCG 1 cut(s) 665
MwoI GCNNNNNNNGC 1 cut(s) 662
NciI CCSGG 3 cut(s) 364, 650, 651
NdeI CATATG 1 cut(s) 178
NdeII GATC 8 cut(s) 148, 310, 393, 428, 491, 784, 952, 963
NlaIII CATG 5 cut(s) 102, 733, 782, 869, 905
NlaIV GGNNCC 1 cut(s) 805
NspI RCATGY 2 cut(s) 733, 905
NspV TTCGAA 1 cut(s) 544
PagI TCATGA 2 cut(s) 778, 865
PaqCI CACCTGC 1 cut(s) 520
PceI AGGCCT 1 cut(s) 271
PciI ACATGT 1 cut(s) 901
PctI GAATGC 1 cut(s) 940
PfeI GAWTC 1 cut(s) 541
PinAI ACCGGT 2 cut(s) 225, 345
PkrI GCNGC 4 cut(s) 301, 501, 664, 940
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
PscI ACATGT 1 cut(s) 901
Psp6I CCWGG 1 cut(s) 373
PspFI CCCAGC 1 cut(s) 215
PspGI CCWGG 1 cut(s) 373
PspN4I GGNNCC 1 cut(s) 805
PstI CTGCAG 1 cut(s) 304
PsuI RGATCY 1 cut(s) 310
PvuII CAGCTG 1 cut(s) 512
RsaI GTAC 3 cut(s) 10, 26, 862
RsaNI GTAC 3 cut(s) 9, 25, 861
SaqAI TTAA 2 cut(s) 824, 973
SatI GCNGC 4 cut(s) 300, 500, 663, 939
Sau3AI GATC 8 cut(s) 148, 310, 393, 428, 491, 784, 952, 963
ScaI AGTACT 2 cut(s) 10, 862
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 4 cut(s) 364, 375, 650, 651
SduI GDGCHC 1 cut(s) 566
SfcI CTRYAG 1 cut(s) 300
SfuI TTCGAA 1 cut(s) 544
SmaI CCCGGG 1 cut(s) 651
SmlI CTYRAG 2 cut(s) 62, 812
SmoI CTYRAG 2 cut(s) 62, 812
Sse9I AATT 8 cut(s) 75, 259, 315, 357, 448, 616, 676, 847
SseBI AGGCCT 1 cut(s) 271
SsiI CCGC 4 cut(s) 231, 379, 663, 684
SspI AATATT 1 cut(s) 889
SspMI CTAG 2 cut(s) 624, 858
StuI AGGCCT 1 cut(s) 271
StyD4I CCNGG 4 cut(s) 362, 373, 648, 649
TaaI ACNGT 1 cut(s) 8
TaiI ACGT 1 cut(s) 171
TaqI TCGA 3 cut(s) 494, 544, 702
TasI AATT 8 cut(s) 75, 259, 315, 357, 448, 616, 676, 847
TatI WGTACW 2 cut(s) 8, 860
TauI GCSGC 1 cut(s) 665
TfiI GAWTC 1 cut(s) 541
Tru1I TTAA 2 cut(s) 824, 973
Tru9I TTAA 2 cut(s) 824, 973
TseI GCWGC 3 cut(s) 299, 499, 938
TspDTI ATGAA 5 cut(s) 39, 426, 565, 786, 912
TspMI CCCGGG 1 cut(s) 649
VneI GTGCAC 1 cut(s) 562
XapI RAATTY 2 cut(s) 75, 676
XceI RCATGY 2 cut(s) 733, 905
XmaI CCCGGG 1 cut(s) 649
XmiI GTMKAC 2 cut(s) 137, 906
XspI CTAG 2 cut(s) 624, 858
ZrmI AGTACT 2 cut(s) 10, 862
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.