Rh2AG092400
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0017380
Physical Location & Seq
Forward (+)
7753697 .. 7755061
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG092400.1

Sequence Viewer

Length: 972 bp
ATGCACACTTGTGTCAGTCAGTACGGGAAGGCTGATCTAAGTTGTTCATTGATTTCCCTCAACATCTCAGATATTTTGAAGATGGGGAGAAAACCATGCTGTGAAAAGGAAGGGGTCATCAGAGGAGCATGGTCTACAATGGAAGATCAAATCCTCACCGACTACGTTCTAACATATGGAGAAGGGAGATGGAGAGACCTTCCTCAAAAAGCTGGGTTGAACCGGTGCGGGAAGAGTTGCAGACTAAGATGGATAAATTATCTTAGGCCTGATATCAAGAGAGGCAACATTTCTGCTGAAGAAGAAGACCTAATTATCAGACTGCATAAGCTTCTGGGAAACCGGTGGTCTCTCATTGCCGGGAGACTGCCAGGGCGGACAGACAACGAGATCAAGAACTACTGGAACACGACTTTATGCAAGAGATCACCTTCAATGGAGCAAAATGATGAGGAGGAAGCAAGTAAACTGAAAAAATGCACAGAGAGATCGAAGCAGCGAGTATCAGCTGAGTCTCAGAAAAAGCAGGTGGAGGTGATTCGAACAAAAGCAGTCAAGTGCACGAAGGTTTTCATTCCATCACATCTACATAGTTATACTAATGCAGTAACTAACTCTGCTAGTTCGGAGTATTCTACTGAAGTCCCGGGTTCTTCAGCCGCACAGGAGCAGAATTCTTGTGGTCTTGTAATGGATTTCGACATCAATGACCTTCTCATATCGGACATGCTTGAAAGTAGTAAAGATTTCCTGCAACACCAAGTCAATGAATGTCATGAAGATCAGATGGGGGATGATGGAGCCAAGCTTGAGGATTTGTTAATGGCCGAAGCAAGGTCGGAAAATTGGATGGCTAGTACTCATGACTACCCATTTCAACCAAATATTGATGATGAACATGTAGACCTCAATGCACTTTCTTCTTTTCTGAATGCAGCAGATGATGATGATCACGAATGGATCATTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

323

Amino Acids

36.63

Weight (kDa)

5.23

Isoelectric Point (pI)

55.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 41 - 88 6.3e-15 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 44 - 102 9.2e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 94 - 139 8.6e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 98 - 145 9.6e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017380)

Species Orthologous Gene IDs
malus_domestica MD02G1087700.v1.1 MD15G1215400.v1.1
prunus_persica Prupe.7G201700_v2.0.a1 Prupe.7G201800_v2.0.a1
pyrus_communis pycom02g07050
rosa_chinensis RchiOBHm_Chr2g0094481
rosa_laevigata RLG00000016494
rosa_multiflora Rmu_sc0004359.1_g000049
rosa_roxburghii Rroxscaffold_2G00147140
rosa_samantha Rh2AG092400 Rh2BG092600 Rh2CG095100 Rh2DG091400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 517
Acc36I ACCTGC 1 cut(s) 517
AccI GTMKAC 2 cut(s) 134, 903
AciI CCGC 3 cut(s) 228, 376, 660
AclWI GGATC 1 cut(s) 968
AcoI YGGCCR 1 cut(s) 825
AcsI RAATTY 1 cut(s) 673
AcuI CTGAAG 3 cut(s) 318, 639, 660
AfaI GTAC 2 cut(s) 23, 859
AfiI CCNNNNNNNGG 1 cut(s) 834
AflIII ACRYGT 1 cut(s) 898
AgeI ACCGGT 2 cut(s) 222, 342
AgsI TTSAA 5 cut(s) 79, 220, 435, 734, 878
AjnI CCWGG 1 cut(s) 370
AjuI GAANNNNNNNTTGG 1 cut(s) 948
AleI CACNNNNGTG 1 cut(s) 9
AluBI AGCT 4 cut(s) 212, 331, 509, 808
AluI AGCT 4 cut(s) 212, 331, 509, 808
Alw21I GWGCWC 1 cut(s) 563
Alw26I GTCTC 4 cut(s) 189, 354, 358, 519
Alw44I GTGCAC 1 cut(s) 559
AlwI GGATC 1 cut(s) 968
Ama87I CYCGRG 1 cut(s) 646
AoxI GGCC 2 cut(s) 266, 825
ApaLI GTGCAC 1 cut(s) 559
ApeKI GCWGC 2 cut(s) 496, 935
ApoI RAATTY 1 cut(s) 673
AsiGI ACCGGT 2 cut(s) 222, 342
Asp700I GAANNNNTTC 1 cut(s) 569
AsuC2I CCSGG 3 cut(s) 361, 647, 648
AsuHPI GGTGA 3 cut(s) 148, 420, 547
AsuII TTCGAA 1 cut(s) 541
AvaI CYCGRG 1 cut(s) 646
BaeGI GKGCMC 1 cut(s) 563
BbsI GAAGAC 1 cut(s) 312
Bbv12I GWGCWC 1 cut(s) 563
BbvI GCAGC 2 cut(s) 508, 947
BccI CCATC 7 cut(s) 76, 183, 243, 586, 781, 791, 844
BciT130I CCWGG 1 cut(s) 372
BclI TGATCA 1 cut(s) 949
BcnI CCSGG 3 cut(s) 361, 647, 648
BcoDI GTCTC 4 cut(s) 189, 354, 358, 519
BfaI CTAG 2 cut(s) 621, 855
BfuAI ACCTGC 1 cut(s) 517
BisI GCNGC 3 cut(s) 497, 660, 936
BlsI GCNGC 3 cut(s) 498, 661, 937
BmcAI AGTACT 1 cut(s) 859
Bme1390I CCNGG 4 cut(s) 361, 372, 647, 648
BmeT110I CYCGRG 1 cut(s) 646
BmiI GGNNCC 1 cut(s) 802
BmrFI CCNGG 4 cut(s) 361, 372, 647, 648
BpiI GAAGAC 1 cut(s) 312
Bpu14I TTCGAA 1 cut(s) 541
BpuEI CTTGAG 1 cut(s) 830
BpuMI CCSGG 3 cut(s) 361, 647, 648
BsaBI GATNNNNATC 1 cut(s) 948
BsaI GGTCTC 2 cut(s) 189, 354
BsaJI CCNNGG 2 cut(s) 371, 646
BsaWI WCCGGW 2 cut(s) 222, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 834
Bse118I RCCGGY 2 cut(s) 222, 342
Bse1I ACTGG 1 cut(s) 407
Bse3DI GCAATG 1 cut(s) 354
Bse8I GATNNNNATC 1 cut(s) 948
BseBI CCWGG 1 cut(s) 372
BseDI CCNNGG 2 cut(s) 371, 646
BseGI GGATG 2 cut(s) 799, 855
BseJI GATNNNNATC 1 cut(s) 948
BseLI CCNNNNNNNGG 1 cut(s) 834
BseMI GCAATG 1 cut(s) 354
BseMII CTCAG 3 cut(s) 81, 501, 530
BseNI ACTGG 1 cut(s) 407
BseRI GAGGAG 2 cut(s) 138, 467
BseSI GKGCMC 1 cut(s) 563
BseXI GCAGC 2 cut(s) 508, 947
BseYI CCCAGC 1 cut(s) 212
BshFI GGCC 2 cut(s) 268, 827
BshTI ACCGGT 2 cut(s) 222, 342
BsiHKAI GWGCWC 1 cut(s) 563
BsiHKCI CYCGRG 1 cut(s) 646
BsiSI CCGG 4 cut(s) 223, 343, 360, 647
BslFI GGGAC 1 cut(s) 629
BslI CCNNNNNNNGG 1 cut(s) 834
BsmAI GTCTC 4 cut(s) 189, 354, 358, 519
BsmFI GGGAC 1 cut(s) 629
BsmI GAATGC 1 cut(s) 937
BsnI GGCC 2 cut(s) 268, 827
Bso31I GGTCTC 2 cut(s) 189, 354
BsoBI CYCGRG 1 cut(s) 646
Bsp119I TTCGAA 1 cut(s) 541
Bsp1286I GDGCHC 1 cut(s) 563
Bsp143I GATC 8 cut(s) 34, 145, 390, 425, 488, 781, 949, 960
BspACI CCGC 3 cut(s) 228, 376, 660
BspANI GGCC 2 cut(s) 268, 827
BspCNI CTCAG 3 cut(s) 80, 502, 529
BspHI TCATGA 2 cut(s) 775, 862
BspLI GGNNCC 1 cut(s) 802
BspMI ACCTGC 1 cut(s) 517
BspPI GGATC 1 cut(s) 968
BspT104I TTCGAA 1 cut(s) 541
BspTNI GGTCTC 2 cut(s) 189, 354
BsrDI GCAATG 1 cut(s) 354
BsrFI RCCGGY 2 cut(s) 222, 342
BsrI ACTGG 1 cut(s) 407
BssAI RCCGGY 2 cut(s) 222, 342
BssECI CCNNGG 2 cut(s) 371, 646
BssMI GATC 8 cut(s) 34, 145, 390, 425, 488, 781, 949, 960
Bst2UI CCWGG 1 cut(s) 372
Bst6I CTCTTC 1 cut(s) 227
BstBI TTCGAA 1 cut(s) 541
BstDEI CTNAG 6 cut(s) 38, 67, 245, 263, 510, 516
BstF5I GGATG 2 cut(s) 799, 855
BstKTI GATC 8 cut(s) 37, 148, 393, 428, 491, 784, 952, 963
BstMAI GTCTC 4 cut(s) 189, 354, 358, 519
BstMBI GATC 8 cut(s) 34, 145, 390, 425, 488, 781, 949, 960
BstNI CCWGG 1 cut(s) 372
BstNSI RCATGY 2 cut(s) 730, 902
BstSCI CCNGG 4 cut(s) 359, 370, 645, 646
BstSLI GKGCMC 1 cut(s) 563
BstV1I GCAGC 2 cut(s) 508, 947
BstV2I GAAGAC 1 cut(s) 312
BsuRI GGCC 2 cut(s) 268, 827
BtsCI GGATG 2 cut(s) 799, 855
BveI ACCTGC 1 cut(s) 517
CciI TCATGA 2 cut(s) 775, 862
Cfr10I RCCGGY 2 cut(s) 222, 342
Cfr9I CCCGGG 1 cut(s) 646
Csp6I GTAC 2 cut(s) 22, 858
CspAI ACCGGT 2 cut(s) 222, 342
CviAII CATG 6 cut(s) 96, 129, 727, 776, 863, 899
CviQI GTAC 2 cut(s) 22, 858
DdeI CTNAG 6 cut(s) 38, 67, 245, 263, 510, 516
DpnI GATC 8 cut(s) 36, 147, 392, 427, 490, 783, 951, 962
DpnII GATC 8 cut(s) 34, 145, 390, 425, 488, 781, 949, 960
EaeI YGGCCR 1 cut(s) 825
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
EciI GGCGGA 1 cut(s) 391
Eco147I AGGCCT 1 cut(s) 268
Eco31I GGTCTC 2 cut(s) 189, 354
Eco32I GATATC 1 cut(s) 274
Eco57I CTGAAG 3 cut(s) 318, 639, 660
Eco88I CYCGRG 1 cut(s) 646
EcoRI GAATTC 1 cut(s) 673
EcoRII CCWGG 1 cut(s) 370
EcoRV GATATC 1 cut(s) 274
FaeI CATG 6 cut(s) 99, 132, 730, 779, 866, 902
FaqI GGGAC 1 cut(s) 629
FatI CATG 6 cut(s) 95, 128, 726, 775, 862, 898
FauI CCCGC 1 cut(s) 221
FauNDI CATATG 1 cut(s) 175
FbaI TGATCA 1 cut(s) 949
FblI GTMKAC 2 cut(s) 134, 903
Fnu4HI GCNGC 3 cut(s) 497, 660, 936
FokI GGATG 2 cut(s) 806, 862
Fsp4HI GCNGC 3 cut(s) 497, 660, 936
FspBI CTAG 2 cut(s) 621, 855
GluI GCNGC 3 cut(s) 497, 660, 936
GsaI CCCAGC 1 cut(s) 216
HaeIII GGCC 2 cut(s) 268, 827
HapII CCGG 4 cut(s) 223, 343, 360, 647
Hin1II CATG 6 cut(s) 99, 132, 730, 779, 866, 902
HindIII AAGCTT 2 cut(s) 329, 806
HinfI GANTC 2 cut(s) 512, 538
HpaII CCGG 4 cut(s) 223, 343, 360, 647
HphI GGTGA 3 cut(s) 148, 420, 547
Hpy166II GTNNAC 4 cut(s) 135, 467, 561, 904
Hpy188I TCNGA 9 cut(s) 70, 122, 320, 519, 628, 724, 786, 841, 930
Hpy188III TCNNGA 5 cut(s) 277, 394, 776, 863, 953
Hpy8I GTNNAC 4 cut(s) 135, 467, 561, 904
HpyAV CCTTC 7 cut(s) 22, 104, 176, 209, 441, 559, 722
HpyCH4IV ACGT 1 cut(s) 165
HpyF3I CTNAG 6 cut(s) 38, 67, 245, 263, 510, 516
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 6 cut(s) 99, 132, 730, 779, 866, 902
Ksp22I TGATCA 1 cut(s) 949
Kzo9I GATC 8 cut(s) 34, 145, 390, 425, 488, 781, 949, 960
LmnI GCTCC 4 cut(s) 125, 439, 667, 800
Lsp1109I GCAGC 2 cut(s) 508, 947
MaeI CTAG 2 cut(s) 621, 855
MaeII ACGT 1 cut(s) 165
MaeIII GTNAC 1 cut(s) 607
MalI GATC 8 cut(s) 36, 147, 392, 427, 490, 783, 951, 962
MboI GATC 8 cut(s) 34, 145, 390, 425, 488, 781, 949, 960
MboII GAAGA 9 cut(s) 91, 155, 244, 311, 314, 317, 645, 791, 912
MhlI GDGCHC 1 cut(s) 563
MluCI AATT 4 cut(s) 256, 312, 673, 844
MlyI GAGTC 1 cut(s) 521
MmeI TCCRAC 1 cut(s) 819
MroXI GAANNNNTTC 1 cut(s) 569
MseI TTAA 2 cut(s) 821, 970
MslI CAYNNNNRTG 1 cut(s) 9
MspA1I CMGCKG 1 cut(s) 509
MspI CCGG 4 cut(s) 223, 343, 360, 647
MspR9I CCNGG 4 cut(s) 361, 372, 647, 648
Mva1269I GAATGC 1 cut(s) 937
MvaI CCWGG 1 cut(s) 372
NciI CCSGG 3 cut(s) 361, 647, 648
NdeI CATATG 1 cut(s) 175
NdeII GATC 8 cut(s) 34, 145, 390, 425, 488, 781, 949, 960
NlaIII CATG 6 cut(s) 99, 132, 730, 779, 866, 902
NlaIV GGNNCC 1 cut(s) 802
NspI RCATGY 2 cut(s) 730, 902
NspV TTCGAA 1 cut(s) 541
OliI CACNNNNGTG 1 cut(s) 9
PagI TCATGA 2 cut(s) 775, 862
PaqCI CACCTGC 1 cut(s) 517
PceI AGGCCT 1 cut(s) 268
PciI ACATGT 1 cut(s) 898
PctI GAATGC 1 cut(s) 937
PdmI GAANNNNTTC 1 cut(s) 569
PfeI GAWTC 1 cut(s) 538
PinAI ACCGGT 2 cut(s) 222, 342
PkrI GCNGC 3 cut(s) 498, 661, 937
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
PscI ACATGT 1 cut(s) 898
Psp6I CCWGG 1 cut(s) 370
PspFI CCCAGC 1 cut(s) 212
PspGI CCWGG 1 cut(s) 370
PspN4I GGNNCC 1 cut(s) 802
PvuII CAGCTG 1 cut(s) 509
RsaI GTAC 2 cut(s) 23, 859
RsaNI GTAC 2 cut(s) 22, 858
RseI CAYNNNNRTG 1 cut(s) 9
SaqAI TTAA 2 cut(s) 821, 970
SatI GCNGC 3 cut(s) 497, 660, 936
Sau3AI GATC 8 cut(s) 34, 145, 390, 425, 488, 781, 949, 960
ScaI AGTACT 1 cut(s) 859
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 4 cut(s) 361, 372, 647, 648
SduI GDGCHC 1 cut(s) 563
SfuI TTCGAA 1 cut(s) 541
SmaI CCCGGG 1 cut(s) 648
SmiMI CAYNNNNRTG 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 809
SmoI CTYRAG 1 cut(s) 809
Sse9I AATT 4 cut(s) 256, 312, 673, 844
SseBI AGGCCT 1 cut(s) 268
SsiI CCGC 3 cut(s) 228, 376, 660
SspI AATATT 1 cut(s) 886
SspMI CTAG 2 cut(s) 621, 855
StuI AGGCCT 1 cut(s) 268
StyD4I CCNGG 4 cut(s) 359, 370, 645, 646
TaiI ACGT 1 cut(s) 168
TaqI TCGA 3 cut(s) 491, 541, 699
TasI AATT 4 cut(s) 256, 312, 673, 844
TatI WGTACW 1 cut(s) 857
TauI GCSGC 1 cut(s) 662
TfiI GAWTC 1 cut(s) 538
Tru1I TTAA 2 cut(s) 821, 970
Tru9I TTAA 2 cut(s) 821, 970
TseI GCWGC 2 cut(s) 496, 935
TspDTI ATGAA 5 cut(s) 36, 562, 783, 792, 909
TspMI CCCGGG 1 cut(s) 646
VneI GTGCAC 1 cut(s) 559
XapI RAATTY 1 cut(s) 673
XceI RCATGY 2 cut(s) 730, 902
XmaI CCCGGG 1 cut(s) 646
XmiI GTMKAC 2 cut(s) 134, 903
XmnI GAANNNNTTC 1 cut(s) 569
XspI CTAG 2 cut(s) 621, 855
ZrmI AGTACT 1 cut(s) 859
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.