Prupe.7G205600_v2.0.a1

Lycopene epsilon cyclase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
18999215 .. 19003465
4251 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G205600.1

Sequence Viewer

Length: 1587 bp
ATGGACTGCGTTGTGGCAATGACGGTGTCGTTTTGCCCGACTTGGAGGTCGAAAAGAAGAGGGCTGCCAAGTAAAAAGGAAGCTCCTTTCTTTGGCTACGGCTTGTACAAGAAGCATTCTCTGCAAGTGAAAGCAAGTGCCGGAAGTGGAGGGGGTGTGGGTGTGGCTGTCAAACAAGGCTTTGCGGATGAAGAGGATTATGTAAAGGCTGGCGGGTCTGAGTTACTTTTCGTTCAAATGCAGCAGAACAAGGCCATGGAAGAGCAGTCCAAGCTCTCTGACAAGCTACCGCCAATATCTGTAGGAGATAATATACTGGATTTGGTGGTGATTGGTTGTGGTCCAGCAGGTCTTGCTCTGGCTGCAGAGTCAGCCAAGTTAGGATTGAAAGTTGGGCTTATTGGCCCTGACCTCCCTTTTACAAATAACTATGGTGTTTGGGAGGATGAATTCAAAGATCTTGGATTTGAAGGGTGTATTGAGCATGTTTGGCAGGACACCATTGTATATCTTGATGATGATTCTGACCCCATTCTGATTGGTCGTGCTTATGGACGCGTTTGTCGAACCAAACTACATGAGGAGCTTTTAAGAATGTGTGTGGAGTCAGGTGTTTCATACCTCAATTCAAGGGTGAAAAGTATTGTTGAAGCTAGCAATGGCCATAGTCTTGTGGCCTGTGACCGCGATATCATAGTTCCCTGCAGGCTTGCTACTGTTGCATCAGGAGCTGCCTCAGGGAAGCTTTTGCAATATGAGGTGGGTGGTCCAAAGGTGTCTGTTCAAACAGCTTATGGTGTGGAGGTTGAGGTGGAAAACAATCCATACGATCCCAACCTAATGGTTTTCATGGACTACAGAGACTACACCAAGCAAAAAGTTTCATCTTTAGAAGCAGAATATCCAACATTTCTTTATGCCATGCCAATGTCTCCAACAAGATTGTTCTTTGAGGAAACTTGCTTGGCTTCTAAAGAGGCCATGCCTTTTGATTTATTGAAGAAAAAGCTCTTGTCAAGGTTAAAGACAATGGGAATCCGTATTATAAAAACTTACGAAGAGGAATGGTCTTGGATTCCAGTTGGTGGGTCCTTACCAAATACTGAGCAAAAGAACCTAGCATTTGGTGCTGCTGCTTGTATGGTACATCCAGCCACAGGGTATTCAGTCGTGAGGTCTTTGTCAGAGGCTCCAAAATATGCTTCCGTGATTGCAACTATTTTGAAGCCGGGTCATTATAAGGCCATTCCCGGCCGTCAAATAAGTAATGAGAACATCTCGATGCAAGCATGGAACACCCTCTGGCCGCAAGAAAGGAAGCGCCAAAGAGCATTCTTTCTTTTTGGACTAGCACTTATTCTGCAACTGGACATTGAGGGCATCAGGACATTCTTTCATACTTTCTTCCGCTTGCCCACCTGGATGTGGCAGGGTTTCCTTGGCTCCACTTTGTCCTCAGCTGATCTCATGCTTTTTGCCGTGTACATGTTTGTTATAGCACCAAATAATTTGAGAAAGGGCCTCATCAGACATCTACTTTCTGATCCTACTGGAGCCACTATGATAAGAACCTATCTCACCCTATAG

Protein Analysis

529

Amino Acids

58.57

Weight (kDa)

7.52

Isoelectric Point (pI)

41.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1046, 1239
AasI GACNNNNNNGTC 2 cut(s) 46, 561
Acc36I ACCTGC 1 cut(s) 338
AccB7I CCANNNNNTGG 1 cut(s) 1085
AccII CGCG 2 cut(s) 558, 687
AciI CCGC 6 cut(s) 185, 213, 290, 685, 1307, 1408
AclWI GGATC 2 cut(s) 824, 1538
AcoI YGGCCR 3 cut(s) 661, 1252, 1304
AcsI RAATTY 1 cut(s) 449
AfaI GTAC 3 cut(s) 107, 1146, 1484
AfiI CCNNNNNNNGG 4 cut(s) 92, 1085, 1157, 1425
AflIII ACRYGT 2 cut(s) 556, 1485
AgsI TTSAA 9 cut(s) 236, 388, 454, 470, 630, 650, 785, 1000, 1225
AjnI CCWGG 1 cut(s) 1418
AjuI GAANNNNNNNTTGG 2 cut(s) 1186, 1218
Alw26I GTCTC 2 cut(s) 855, 936
AlwI GGATC 2 cut(s) 824, 1538
AlwNI CAGNNNCTG 1 cut(s) 731
AoxI GGCC 9 cut(s) 252, 403, 661, 675, 978, 1242, 1252, 1304, 1519
ApeKI GCWGC 6 cut(s) 64, 241, 362, 731, 1130, 1133
ApoI RAATTY 1 cut(s) 449
AspLEI GCGC 1 cut(s) 1323
AspS9I GGNCC 5 cut(s) 341, 404, 767, 1089, 1519
AsuC2I CCSGG 2 cut(s) 1230, 1251
AsuHPI GGTGA 3 cut(s) 340, 646, 1570
AsuNHI GCTAGC 1 cut(s) 653
AvaII GGWCC 3 cut(s) 341, 767, 1089
AxyI CCTNAGG 1 cut(s) 736
BalI TGGCCA 1 cut(s) 663
BbvCI CCTCAGC 1 cut(s) 1456
BbvI GCAGC 6 cut(s) 51, 253, 349, 718, 1117, 1120
BceAI ACGGC 3 cut(s) 115, 1239, 1463
BciT130I CCWGG 1 cut(s) 1420
BcnI CCSGG 2 cut(s) 1230, 1251
BcoDI GTCTC 2 cut(s) 855, 936
BfaI CTAG 3 cut(s) 654, 1118, 1349
BfmI CTRYAG 5 cut(s) 300, 363, 703, 856, 1583
BfoI RGCGCY 1 cut(s) 1324
BfuAI ACCTGC 1 cut(s) 338
BglII AGATCT 1 cut(s) 457
BisI GCNGC 7 cut(s) 65, 242, 363, 732, 1131, 1134, 1307
BlsI GCNGC 7 cut(s) 66, 243, 364, 733, 1132, 1135, 1308
Bme1390I CCNGG 3 cut(s) 1230, 1251, 1420
Bme18I GGWCC 3 cut(s) 341, 767, 1089
BmgT120I GGNCC 5 cut(s) 341, 404, 767, 1089, 1519
BmiI GGNNCC 4 cut(s) 1090, 1191, 1444, 1555
BmrFI CCNGG 3 cut(s) 1230, 1251, 1420
BmsI GCATC 3 cut(s) 731, 1272, 1389
BmtI GCTAGC 1 cut(s) 657
BplI GAGNNNNNCTC 2 cut(s) 1262, 1294
BpmI CTGGAG 1 cut(s) 1572
Bpu10I CCTNAGC 1 cut(s) 1456
BpuMI CCSGG 2 cut(s) 1230, 1251
BsaJI CCNNGG 2 cut(s) 255, 1438
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 4 cut(s) 92, 1085, 1157, 1425
Bse1I ACTGG 4 cut(s) 321, 1079, 1371, 1555
Bse21I CCTNAGG 1 cut(s) 736
Bse3DI GCAATG 2 cut(s) 24, 664
BseBI CCWGG 1 cut(s) 1420
BseDI CCNNGG 2 cut(s) 255, 1438
BseGI GGATG 4 cut(s) 193, 451, 1147, 1428
BseLI CCNNNNNNNGG 4 cut(s) 92, 1085, 1157, 1425
BseMI GCAATG 2 cut(s) 24, 664
BseMII CTCAG 4 cut(s) 210, 750, 1095, 1470
BseNI ACTGG 4 cut(s) 321, 1079, 1371, 1555
BseRI GAGGAG 1 cut(s) 596
BseX3I CGGCCG 1 cut(s) 1252
BseXI GCAGC 6 cut(s) 51, 253, 349, 718, 1117, 1120
Bsh1236I CGCG 2 cut(s) 558, 687
Bsh1285I CGRYCG 1 cut(s) 1255
BshFI GGCC 9 cut(s) 254, 405, 663, 677, 980, 1244, 1254, 1306, 1521
BsiEI CGRYCG 1 cut(s) 1255
BsiSI CCGG 3 cut(s) 141, 1229, 1251
BslI CCNNNNNNNGG 4 cut(s) 92, 1085, 1157, 1425
BsmAI GTCTC 2 cut(s) 855, 936
BsmI GAATGC 2 cut(s) 115, 1331
BsnI GGCC 9 cut(s) 254, 405, 663, 677, 980, 1244, 1254, 1306, 1521
Bsp1407I TGTACA 2 cut(s) 105, 1482
Bsp143I GATC 4 cut(s) 457, 829, 1462, 1543
Bsp19I CCATGG 1 cut(s) 255
BspACI CCGC 6 cut(s) 185, 213, 290, 685, 1307, 1408
BspANI GGCC 9 cut(s) 254, 405, 663, 677, 980, 1244, 1254, 1306, 1521
BspCNI CTCAG 4 cut(s) 211, 749, 1096, 1469
BspFNI CGCG 2 cut(s) 558, 687
BspLI GGNNCC 4 cut(s) 1090, 1191, 1444, 1555
BspMAI CTGCAG 2 cut(s) 367, 707
BspMI ACCTGC 1 cut(s) 338
BspOI GCTAGC 1 cut(s) 657
BspPI GGATC 2 cut(s) 824, 1538
BspQI GCTCTTC 1 cut(s) 255
BsrDI GCAATG 2 cut(s) 24, 664
BsrGI TGTACA 2 cut(s) 105, 1482
BsrI ACTGG 4 cut(s) 321, 1079, 1371, 1555
BssECI CCNNGG 2 cut(s) 255, 1438
BssMI GATC 4 cut(s) 457, 829, 1462, 1543
BssT1I CCWWGG 2 cut(s) 255, 1438
Bst2UI CCWGG 1 cut(s) 1420
Bst4CI ACNGT 2 cut(s) 25, 718
Bst6I CTCTTC 4 cut(s) 52, 186, 255, 1053
BstAPI GCANNNNNTGC 3 cut(s) 121, 353, 1127
BstAUI TGTACA 2 cut(s) 105, 1482
BstC8I GCNNGC 6 cut(s) 211, 655, 707, 711, 1287, 1412
BstDEI CTNAG 4 cut(s) 219, 736, 1104, 1456
BstDSI CCRYGG 1 cut(s) 255
BstF5I GGATG 4 cut(s) 193, 451, 1147, 1428
BstFNI CGCG 2 cut(s) 558, 687
BstH2I RGCGCY 1 cut(s) 1324
BstHHI GCGC 1 cut(s) 1323
BstKTI GATC 4 cut(s) 460, 832, 1465, 1546
BstMAI GTCTC 2 cut(s) 855, 936
BstMBI GATC 4 cut(s) 457, 829, 1462, 1543
BstMCI CGRYCG 1 cut(s) 1255
BstMWI GCNNNNNNNGC 9 cut(s) 121, 271, 353, 362, 371, 490, 719, 728, 1127
BstNI CCWGG 1 cut(s) 1420
BstNSI RCATGY 2 cut(s) 488, 1489
BstSCI CCNGG 3 cut(s) 1228, 1249, 1418
BstSFI CTRYAG 5 cut(s) 300, 363, 703, 856, 1583
BstUI CGCG 2 cut(s) 558, 687
BstV1I GCAGC 6 cut(s) 51, 253, 349, 718, 1117, 1120
BstX2I RGATCY 1 cut(s) 457
BstXI CCANNNNNNTGG 1 cut(s) 841
BstYI RGATCY 1 cut(s) 457
BstZI CGGCCG 1 cut(s) 1252
Bsu36I CCTNAGG 1 cut(s) 736
BsuRI GGCC 9 cut(s) 254, 405, 663, 677, 980, 1244, 1254, 1306, 1521
BtgI CCRYGG 1 cut(s) 255
BtsCI GGATG 4 cut(s) 193, 451, 1147, 1428
BveI ACCTGC 1 cut(s) 338
Cac8I GCNNGC 6 cut(s) 211, 655, 707, 711, 1287, 1412
CaiI CAGNNNCTG 1 cut(s) 731
CfoI GCGC 1 cut(s) 1323
Cfr13I GGNCC 5 cut(s) 341, 404, 767, 1089, 1519
CseI GACGC 1 cut(s) 564
Csp6I GTAC 3 cut(s) 106, 1145, 1483
CviAII CATG 9 cut(s) 256, 485, 578, 850, 922, 982, 1290, 1468, 1486
CviQI GTAC 3 cut(s) 106, 1145, 1483
DdeI CTNAG 4 cut(s) 219, 736, 1104, 1456
DpnI GATC 4 cut(s) 459, 831, 1464, 1545
DpnII GATC 4 cut(s) 457, 829, 1462, 1543
DrdI GACNNNNNNGTC 2 cut(s) 46, 561
DseDI GACNNNNNNGTC 2 cut(s) 46, 561
EaeI YGGCCR 3 cut(s) 661, 1252, 1304
EagI CGGCCG 1 cut(s) 1252
Eam1104I CTCTTC 4 cut(s) 52, 186, 255, 1053
EarI CTCTTC 4 cut(s) 52, 186, 255, 1053
EclXI CGGCCG 1 cut(s) 1252
Eco130I CCWWGG 2 cut(s) 255, 1438
Eco32I GATATC 1 cut(s) 691
Eco47I GGWCC 3 cut(s) 341, 767, 1089
Eco52I CGGCCG 1 cut(s) 1252
Eco81I CCTNAGG 1 cut(s) 736
EcoO109I RGGNCCY 2 cut(s) 1089, 1519
EcoRI GAATTC 1 cut(s) 449
EcoRII CCWGG 1 cut(s) 1418
EcoRV GATATC 1 cut(s) 691
EcoT14I CCWWGG 2 cut(s) 255, 1438
ErhI CCWWGG 2 cut(s) 255, 1438
FaeI CATG 9 cut(s) 259, 488, 581, 853, 925, 985, 1293, 1471, 1489
FalI AAGNNNNNCTT 2 cut(s) 381, 413
FatI CATG 9 cut(s) 255, 484, 577, 849, 921, 981, 1289, 1467, 1485
FauI CCCGC 1 cut(s) 206
Fnu4HI GCNGC 7 cut(s) 65, 242, 363, 732, 1131, 1134, 1307
FokI GGATG 4 cut(s) 200, 458, 1134, 1435
Fsp4HI GCNGC 7 cut(s) 65, 242, 363, 732, 1131, 1134, 1307
FspBI CTAG 3 cut(s) 654, 1118, 1349
GlaI GCGC 1 cut(s) 1322
GluI GCNGC 7 cut(s) 65, 242, 363, 732, 1131, 1134, 1307
GsuI CTGGAG 1 cut(s) 1572
HaeII RGCGCY 1 cut(s) 1324
HaeIII GGCC 9 cut(s) 254, 405, 663, 677, 980, 1244, 1254, 1306, 1521
HapII CCGG 3 cut(s) 141, 1229, 1251
HgaI GACGC 1 cut(s) 564
HhaI GCGC 1 cut(s) 1323
Hin1II CATG 9 cut(s) 259, 488, 581, 853, 925, 985, 1293, 1471, 1489
Hin6I GCGC 1 cut(s) 1321
HinP1I GCGC 1 cut(s) 1321
HindIII AAGCTT 1 cut(s) 743
HinfI GANTC 5 cut(s) 368, 521, 605, 1035, 1075
HpaII CCGG 3 cut(s) 141, 1229, 1251
HphI GGTGA 3 cut(s) 340, 646, 1570
Hpy166II GTNNAC 1 cut(s) 1483
Hpy188I TCNGA 7 cut(s) 220, 280, 526, 537, 1186, 1529, 1543
Hpy188III TCNNGA 5 cut(s) 512, 726, 1171, 1279, 1384
Hpy8I GTNNAC 1 cut(s) 1483
HpyAV CCTTC 1 cut(s) 464
HpyCH4III ACNGT 2 cut(s) 25, 718
HpyCH4V TGCA 9 cut(s) 124, 241, 365, 705, 722, 751, 1214, 1285, 1363
HpyF10VI GCNNNNNNNGC 9 cut(s) 121, 271, 353, 362, 371, 490, 719, 728, 1127
HpyF3I CTNAG 4 cut(s) 219, 736, 1104, 1456
Hsp92II CATG 9 cut(s) 259, 488, 581, 853, 925, 985, 1293, 1471, 1489
HspAI GCGC 1 cut(s) 1321
Kzo9I GATC 4 cut(s) 457, 829, 1462, 1543
LguI GCTCTTC 1 cut(s) 255
LmnI GCTCC 6 cut(s) 88, 583, 728, 1195, 1448, 1553
Lsp1109I GCAGC 6 cut(s) 51, 253, 349, 718, 1117, 1120
LweI GCATC 3 cut(s) 731, 1272, 1389
MaeI CTAG 3 cut(s) 654, 1118, 1349
MaeIII GTNAC 2 cut(s) 222, 680
MalI GATC 4 cut(s) 459, 831, 1464, 1545
MboI GATC 4 cut(s) 457, 829, 1462, 1543
MboII GAAGA 6 cut(s) 69, 203, 272, 1012, 1070, 1396
MflI RGATCY 1 cut(s) 457
MlsI TGGCCA 1 cut(s) 663
MluCI AATT 3 cut(s) 449, 625, 1507
MluI ACGCGT 1 cut(s) 556
MluNI TGGCCA 1 cut(s) 663
MlyI GAGTC 2 cut(s) 377, 614
MmeI TCCRAC 2 cut(s) 929, 959
Mox20I TGGCCA 1 cut(s) 663
MscI TGGCCA 1 cut(s) 663
MseI TTAA 2 cut(s) 590, 1022
MslI CAYNNNNRTG 3 cut(s) 926, 1280, 1421
Msp20I TGGCCA 1 cut(s) 663
MspA1I CMGCKG 1 cut(s) 1460
MspI CCGG 3 cut(s) 141, 1229, 1251
MspR9I CCNGG 3 cut(s) 1230, 1251, 1420
Mva1269I GAATGC 2 cut(s) 115, 1331
MvaI CCWGG 1 cut(s) 1420
MvnI CGCG 2 cut(s) 558, 687
MwoI GCNNNNNNNGC 9 cut(s) 121, 271, 353, 362, 371, 490, 719, 728, 1127
NciI CCSGG 2 cut(s) 1230, 1251
NcoI CCATGG 1 cut(s) 255
NdeII GATC 4 cut(s) 457, 829, 1462, 1543
NheI GCTAGC 1 cut(s) 653
NlaIII CATG 9 cut(s) 259, 488, 581, 853, 925, 985, 1293, 1471, 1489
NlaIV GGNNCC 4 cut(s) 1090, 1191, 1444, 1555
NmuCI GTSAC 1 cut(s) 680
NspI RCATGY 2 cut(s) 488, 1489
PciI ACATGT 1 cut(s) 1485
PciSI GCTCTTC 1 cut(s) 255
PcsI WCGNNNNNNNCGW 2 cut(s) 35, 562
PctI GAATGC 2 cut(s) 115, 1331
PfeI GAWTC 3 cut(s) 521, 1035, 1075
PflFI GACNNNGTC 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 1085
PkrI GCNGC 7 cut(s) 66, 243, 364, 733, 1132, 1135, 1308
PleI GAGTC 2 cut(s) 376, 613
PpsI GAGTC 2 cut(s) 376, 613
PpuMI RGGWCCY 1 cut(s) 1089
PscI ACATGT 1 cut(s) 1485
PsiI TTATAA 2 cut(s) 1046, 1239
Psp5II RGGWCCY 1 cut(s) 1089
Psp6I CCWGG 1 cut(s) 1418
PspGI CCWGG 1 cut(s) 1418
PspN4I GGNNCC 4 cut(s) 1090, 1191, 1444, 1555
PspPI GGNCC 5 cut(s) 341, 404, 767, 1089, 1519
PspPPI RGGWCCY 1 cut(s) 1089
PstI CTGCAG 2 cut(s) 367, 707
PstNI CAGNNNCTG 1 cut(s) 731
PsuI RGATCY 1 cut(s) 457
PsyI GACNNNGTC 1 cut(s) 25
PvuII CAGCTG 1 cut(s) 1460
RsaI GTAC 3 cut(s) 107, 1146, 1484
RsaNI GTAC 3 cut(s) 106, 1145, 1483
RseI CAYNNNNRTG 3 cut(s) 926, 1280, 1421
SapI GCTCTTC 1 cut(s) 255
SaqAI TTAA 2 cut(s) 590, 1022
SatI GCNGC 7 cut(s) 65, 242, 363, 732, 1131, 1134, 1307
Sau3AI GATC 4 cut(s) 457, 829, 1462, 1543
Sau96I GGNCC 5 cut(s) 341, 404, 767, 1089, 1519
SbfI CCTGCAGG 1 cut(s) 707
SchI GAGTC 2 cut(s) 377, 614
ScrFI CCNGG 3 cut(s) 1230, 1251, 1420
SdaI CCTGCAGG 1 cut(s) 707
SfaNI GCATC 3 cut(s) 731, 1272, 1389
SfcI CTRYAG 5 cut(s) 300, 363, 703, 856, 1583
SinI GGWCC 3 cut(s) 341, 767, 1089
SmiMI CAYNNNNRTG 3 cut(s) 926, 1280, 1421
Sse8387I CCTGCAGG 1 cut(s) 707
Sse9I AATT 3 cut(s) 449, 625, 1507
SsiI CCGC 6 cut(s) 185, 213, 290, 685, 1307, 1408
SspMI CTAG 3 cut(s) 654, 1118, 1349
StyD4I CCNGG 3 cut(s) 1228, 1249, 1418
StyI CCWWGG 2 cut(s) 255, 1438
TaaI ACNGT 2 cut(s) 25, 718
TaqI TCGA 3 cut(s) 50, 565, 1280
TasI AATT 3 cut(s) 449, 625, 1507
TatI WGTACW 2 cut(s) 105, 1482
TauI GCSGC 1 cut(s) 1309
TfiI GAWTC 3 cut(s) 521, 1035, 1075
Tru1I TTAA 2 cut(s) 590, 1022
Tru9I TTAA 2 cut(s) 590, 1022
TseFI GTSAC 1 cut(s) 680
TseI GCWGC 6 cut(s) 64, 241, 362, 731, 1130, 1133
Tsp45I GTSAC 1 cut(s) 680
TspDTI ATGAA 6 cut(s) 204, 462, 606, 838, 873, 1385
TspGWI ACGGA 2 cut(s) 1028, 1195
Tth111I GACNNNGTC 1 cut(s) 25
Van91I CCANNNNNTGG 1 cut(s) 1085
VpaK11BI GGWCC 3 cut(s) 341, 767, 1089
XapI RAATTY 1 cut(s) 449
XceI RCATGY 2 cut(s) 488, 1489
XspI CTAG 3 cut(s) 654, 1118, 1349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.