Rh2CG089500

Lycopene epsilon cyclase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0012912
Physical Location & Seq
Forward (+)
7327776 .. 7331373
3598 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG089500.1

Sequence Viewer

Length: 1320 bp
ATGCAGCTTCCGCCAATAAGGGATGATGTACTGGATTTGGTGGTGATTGGTTGTGGTCCGGCGGGTCTTGCTCTGGCTGCCGAGTCGGCTAAGTTGGGATTGAAAGTTGGGCTCATTGGCCCTGACCTGCCTTTCACAAACAACTATGGTGTTTGGGAAGATGAATTCAAAGACCTTGGACTAGAAGGGTGTATTGAGCATGTTTGGCAGGACACCATTGTGTATCTTGATGACGAAAGCGACCCCATTTTGTTCGGTCGTGCTTACGGTCGTGTGTGTCGAAATTTGCTCCATGAGGAGCTTTTGAGAAGGTGTGTAGAGTCAGGTGTTTCATACCTTAGTTCAAGGGTGGAGAGTATTGTTGAAGGTAGCAATGGCCATAGCCTTATAGCATGTGAGCATGGTATCAATGTCCCCTCTAGGCTTGCTACTGTTGCATCAGGAGCTGCTTCAGGGAAGCTTTTGCAATATGAGGTGGGTGGTCCAAAGGTCTCTGTCCAAACAGCTTATGGAGTGGAGGTTGAGGTGGAAAGTTATCCATATGATCCCAACCTGATGGTTTTCATGGATTATAGAGACTACACAAAACAAAAAGTTTCATGTTTGGAAGCAGAATATCCCACATTTCTTTATGCCATGGCCATGTCCCCAACAAGAATATTCTTTGAGGAAACTTGCTTGGCTTCGAAAGATGCCATGCCTTTTGATTTATTGAAGAAAAAGCTCTTGTCAAGGTTAAAGACATTGGGAATTCGTATTGTAAAAACTTATGAAGAGGAATGGTCTTGGATTCCAGTTGGGGGGTCATTACCGAATACAGAGCAAAAGAATCTGGCATTTGGTGCTGCTGCTAGCATGGTACATCCAGCCACAGGGTACTCAGTAGTGAGATCTTTGTCGGAGGCCCCAAAATATGCTTCTGTGATTGCAAAGATTTTGAAGCAGGATCATCCTAAGGCCAGTCTTAGCCGTCAAATAAATAATCAGAATATCTCAATGCAAGCCTGGAATACCCTCTGGCCACCAGAAAGGAAACGCCAAAGATCATTCTTCCTGTTTGGACTAGCGCTCATTCTGCAACTGGACATTGAGGGCATTAGGACATTCTTCGATACCTTCTTCCGCTTACCCACTTGGATGTGGCAGGGTTTTCTCGGGTCTTCTCTGTCCTCGGCTGATCTCATGCTCTTTGCCTTGTATATGTTTGTTATAGCACCAAATAGTTTGAGAAGTCGTCTTGTCAAACATCTATTATCAGATCCTACTGGAGCCACTATGATAAAAACCTATCTCACAGCAAACTTGAATTCCTTCCCTTAG

Protein Analysis

439

Amino Acids

48.94

Weight (kDa)

5.89

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lycopene_cycl PF05834 12 - 410 6.8e-151 Lycopene cyclase protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 135
AciI CCGC 3 cut(s) 11, 62, 1123
AclWI GGATC 3 cut(s) 539, 954, 1253
AcoI YGGCCR 3 cut(s) 376, 639, 1019
AcsI RAATTY 4 cut(s) 164, 283, 750, 1306
AcuI CTGAAG 1 cut(s) 435
AfaI GTAC 3 cut(s) 30, 861, 878
AfeI AGCGCT 1 cut(s) 1068
AfiI CCNNNNNNNGG 2 cut(s) 800, 872
AgsI TTSAA 7 cut(s) 103, 169, 345, 365, 715, 940, 1306
AjnI CCWGG 1 cut(s) 1004
AjuI GAANNNNNNNTTGG 2 cut(s) 901, 933
AleI CACNNNNGTG 1 cut(s) 218
AluBI AGCT 6 cut(s) 7, 301, 446, 460, 506, 724
AluI AGCT 6 cut(s) 7, 301, 446, 460, 506, 724
Alw26I GTCTC 2 cut(s) 496, 570
AlwI GGATC 3 cut(s) 539, 954, 1253
AlwNI CAGNNNCTG 1 cut(s) 446
Ama87I CYCGRG 1 cut(s) 1154
Aor51HI AGCGCT 1 cut(s) 1068
AoxI GGCC 6 cut(s) 118, 376, 639, 903, 957, 1019
ApeKI GCWGC 5 cut(s) 4, 77, 446, 845, 848
ApoI RAATTY 4 cut(s) 164, 283, 750, 1306
Asp700I GAANNNNTTC 1 cut(s) 1310
AspLEI GCGC 1 cut(s) 1069
AspS9I GGNCC 4 cut(s) 56, 119, 482, 904
AsuHPI GGTGA 1 cut(s) 55
AsuII TTCGAA 1 cut(s) 686
AsuNHI GCTAGC 1 cut(s) 851
AvaI CYCGRG 1 cut(s) 1154
AvaII GGWCC 2 cut(s) 56, 482
AxyI CCTNAGG 1 cut(s) 954
BalI TGGCCA 3 cut(s) 378, 641, 1021
BanII GRGCYC 1 cut(s) 114
BbsI GAAGAC 1 cut(s) 1152
BbvI GCAGC 5 cut(s) 16, 64, 433, 832, 835
BccI CCATC 1 cut(s) 550
BceAI ACGGC 1 cut(s) 954
BciT130I CCWGG 1 cut(s) 1006
BcoDI GTCTC 2 cut(s) 496, 570
BfaI CTAG 4 cut(s) 182, 420, 852, 1064
BfoI RGCGCY 1 cut(s) 1070
BfuAI ACCTGC 1 cut(s) 135
BglI GCCNNNNNGGC 1 cut(s) 86
BglII AGATCT 1 cut(s) 890
BisI GCNGC 5 cut(s) 5, 78, 447, 846, 849
BlsI GCNGC 5 cut(s) 6, 79, 448, 847, 850
Bme1390I CCNGG 1 cut(s) 1006
Bme18I GGWCC 2 cut(s) 56, 482
BmeT110I CYCGRG 1 cut(s) 1154
BmgT120I GGNCC 4 cut(s) 56, 119, 482, 904
BmiI GGNNCC 2 cut(s) 906, 1270
BmrFI CCNGG 1 cut(s) 1006
BmsI GCATC 2 cut(s) 446, 682
BmtI GCTAGC 1 cut(s) 855
BpiI GAAGAC 1 cut(s) 1152
BpmI CTGGAG 1 cut(s) 1287
Bpu14I TTCGAA 1 cut(s) 686
BsaI GGTCTC 1 cut(s) 496
BsaJI CCNNGG 3 cut(s) 175, 636, 1170
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bsc4I CCNNNNNNNGG 2 cut(s) 800, 872
Bse1I ACTGG 5 cut(s) 36, 794, 960, 1086, 1270
Bse21I CCTNAGG 1 cut(s) 954
Bse3DI GCAATG 1 cut(s) 379
BseBI CCWGG 1 cut(s) 1006
BseDI CCNNGG 3 cut(s) 175, 636, 1170
BseGI GGATG 4 cut(s) 28, 862, 949, 1143
BseLI CCNNNNNNNGG 2 cut(s) 800, 872
BseMI GCAATG 1 cut(s) 379
BseMII CTCAG 1 cut(s) 894
BseNI ACTGG 5 cut(s) 36, 794, 960, 1086, 1270
BseRI GAGGAG 1 cut(s) 311
BseXI GCAGC 5 cut(s) 16, 64, 433, 832, 835
Bsh1285I CGRYCG 2 cut(s) 259, 271
BshFI GGCC 6 cut(s) 120, 378, 641, 905, 959, 1021
BsiEI CGRYCG 2 cut(s) 259, 271
BsiHKCI CYCGRG 1 cut(s) 1154
BsiSI CCGG 1 cut(s) 59
BslFI GGGAC 2 cut(s) 398, 631
BslI CCNNNNNNNGG 2 cut(s) 800, 872
BsmAI GTCTC 2 cut(s) 496, 570
BsmFI GGGAC 2 cut(s) 398, 631
BsnI GGCC 6 cut(s) 120, 378, 641, 905, 959, 1021
Bso31I GGTCTC 1 cut(s) 496
BsoBI CYCGRG 1 cut(s) 1154
Bsp119I TTCGAA 1 cut(s) 686
Bsp1286I GDGCHC 1 cut(s) 114
Bsp143I GATC 6 cut(s) 544, 890, 946, 1043, 1177, 1258
Bsp19I CCATGG 1 cut(s) 636
BspACI CCGC 3 cut(s) 11, 62, 1123
BspANI GGCC 6 cut(s) 120, 378, 641, 905, 959, 1021
BspCNI CTCAG 1 cut(s) 893
BspLI GGNNCC 2 cut(s) 906, 1270
BspMI ACCTGC 1 cut(s) 135
BspOI GCTAGC 1 cut(s) 855
BspPI GGATC 3 cut(s) 539, 954, 1253
BspT104I TTCGAA 1 cut(s) 686
BspTNI GGTCTC 1 cut(s) 496
BsrDI GCAATG 1 cut(s) 379
BsrI ACTGG 5 cut(s) 36, 794, 960, 1086, 1270
BssECI CCNNGG 3 cut(s) 175, 636, 1170
BssMI GATC 6 cut(s) 544, 890, 946, 1043, 1177, 1258
BssT1I CCWWGG 2 cut(s) 175, 636
Bst2UI CCWGG 1 cut(s) 1006
Bst4CI ACNGT 2 cut(s) 269, 433
Bst6I CTCTTC 1 cut(s) 768
BstAPI GCANNNNNTGC 1 cut(s) 842
BstBI TTCGAA 1 cut(s) 686
BstC8I GCNNGC 3 cut(s) 426, 853, 1002
BstDEI CTNAG 6 cut(s) 90, 338, 880, 954, 965, 1317
BstDSI CCRYGG 1 cut(s) 636
BstF5I GGATG 4 cut(s) 28, 862, 949, 1143
BstH2I RGCGCY 1 cut(s) 1070
BstHHI GCGC 1 cut(s) 1069
BstKTI GATC 6 cut(s) 547, 893, 949, 1046, 1180, 1261
BstMAI GTCTC 2 cut(s) 496, 570
BstMBI GATC 6 cut(s) 544, 890, 946, 1043, 1177, 1258
BstMCI CGRYCG 2 cut(s) 259, 271
BstMWI GCNNNNNNNGC 9 cut(s) 10, 68, 77, 86, 205, 434, 443, 842, 1075
BstNI CCWGG 1 cut(s) 1006
BstNSI RCATGY 2 cut(s) 203, 396
BstSCI CCNGG 1 cut(s) 1004
BstV1I GCAGC 5 cut(s) 16, 64, 433, 832, 835
BstV2I GAAGAC 1 cut(s) 1152
BstX2I RGATCY 2 cut(s) 890, 1258
BstXI CCANNNNNNTGG 1 cut(s) 556
BstYI RGATCY 2 cut(s) 890, 1258
Bsu36I CCTNAGG 1 cut(s) 954
BsuRI GGCC 6 cut(s) 120, 378, 641, 905, 959, 1021
BtgI CCRYGG 1 cut(s) 636
BtsCI GGATG 4 cut(s) 28, 862, 949, 1143
BveI ACCTGC 1 cut(s) 135
Cac8I GCNNGC 3 cut(s) 426, 853, 1002
CaiI CAGNNNCTG 1 cut(s) 446
CfoI GCGC 1 cut(s) 1069
Cfr13I GGNCC 4 cut(s) 56, 119, 482, 904
Csp6I GTAC 3 cut(s) 29, 860, 877
CviQI GTAC 3 cut(s) 29, 860, 877
DdeI CTNAG 6 cut(s) 90, 338, 880, 954, 965, 1317
DpnI GATC 6 cut(s) 546, 892, 948, 1045, 1179, 1260
DpnII GATC 6 cut(s) 544, 890, 946, 1043, 1177, 1258
EaeI YGGCCR 3 cut(s) 376, 639, 1019
Eam1104I CTCTTC 1 cut(s) 768
EarI CTCTTC 1 cut(s) 768
Eco130I CCWWGG 2 cut(s) 175, 636
Eco24I GRGCYC 1 cut(s) 114
Eco31I GGTCTC 1 cut(s) 496
Eco47I GGWCC 2 cut(s) 56, 482
Eco47III AGCGCT 1 cut(s) 1068
Eco57I CTGAAG 1 cut(s) 435
Eco81I CCTNAGG 1 cut(s) 954
Eco88I CYCGRG 1 cut(s) 1154
EcoO109I RGGNCCY 1 cut(s) 904
EcoRI GAATTC 3 cut(s) 164, 750, 1306
EcoRII CCWGG 1 cut(s) 1004
EcoT14I CCWWGG 2 cut(s) 175, 636
EcoT38I GRGCYC 1 cut(s) 114
ErhI CCWWGG 2 cut(s) 175, 636
FaqI GGGAC 2 cut(s) 398, 631
FauI CCCGC 1 cut(s) 55
FauNDI CATATG 1 cut(s) 541
Fnu4HI GCNGC 5 cut(s) 5, 78, 447, 846, 849
FokI GGATG 4 cut(s) 35, 849, 936, 1150
FriOI GRGCYC 1 cut(s) 114
Fsp4HI GCNGC 5 cut(s) 5, 78, 447, 846, 849
FspBI CTAG 4 cut(s) 182, 420, 852, 1064
GlaI GCGC 1 cut(s) 1068
GluI GCNGC 5 cut(s) 5, 78, 447, 846, 849
GsuI CTGGAG 1 cut(s) 1287
HaeII RGCGCY 1 cut(s) 1070
HaeIII GGCC 6 cut(s) 120, 378, 641, 905, 959, 1021
HapII CCGG 1 cut(s) 59
HhaI GCGC 1 cut(s) 1069
Hin6I GCGC 1 cut(s) 1067
HinP1I GCGC 1 cut(s) 1067
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 4 cut(s) 83, 320, 790, 829
HpaII CCGG 1 cut(s) 59
HphI GGTGA 1 cut(s) 55
Hpy188I TCNGA 3 cut(s) 901, 987, 1258
Hpy188III TCNNGA 2 cut(s) 227, 441
HpyAV CCTTC 4 cut(s) 179, 303, 359, 1126
HpyCH4III ACNGT 2 cut(s) 269, 433
HpyCH4V TGCA 6 cut(s) 4, 437, 466, 929, 1000, 1078
HpyF10VI GCNNNNNNNGC 9 cut(s) 10, 68, 77, 86, 205, 434, 443, 842, 1075
HpyF3I CTNAG 6 cut(s) 90, 338, 880, 954, 965, 1317
HspAI GCGC 1 cut(s) 1067
Kzo9I GATC 6 cut(s) 544, 890, 946, 1043, 1177, 1258
LmnI GCTCC 4 cut(s) 294, 298, 443, 1268
Lsp1109I GCAGC 5 cut(s) 16, 64, 433, 832, 835
LweI GCATC 2 cut(s) 446, 682
MaeI CTAG 4 cut(s) 182, 420, 852, 1064
MalI GATC 6 cut(s) 546, 892, 948, 1045, 1179, 1260
MboI GATC 6 cut(s) 544, 890, 946, 1043, 1177, 1258
MboII GAAGA 7 cut(s) 170, 727, 785, 1042, 1099, 1111, 1152
MflI RGATCY 2 cut(s) 890, 1258
MhlI GDGCHC 1 cut(s) 114
MlsI TGGCCA 3 cut(s) 378, 641, 1021
MluCI AATT 4 cut(s) 164, 283, 750, 1306
MluNI TGGCCA 3 cut(s) 378, 641, 1021
MlyI GAGTC 2 cut(s) 92, 329
MmeI TCCRAC 1 cut(s) 879
Mox20I TGGCCA 3 cut(s) 378, 641, 1021
MroXI GAANNNNTTC 1 cut(s) 1310
MscI TGGCCA 3 cut(s) 378, 641, 1021
MseI TTAA 1 cut(s) 737
MslI CAYNNNNRTG 3 cut(s) 218, 641, 1136
Msp20I TGGCCA 3 cut(s) 378, 641, 1021
MspI CCGG 1 cut(s) 59
MspR9I CCNGG 1 cut(s) 1006
MvaI CCWGG 1 cut(s) 1006
MwoI GCNNNNNNNGC 9 cut(s) 10, 68, 77, 86, 205, 434, 443, 842, 1075
NcoI CCATGG 1 cut(s) 636
NdeI CATATG 1 cut(s) 541
NdeII GATC 6 cut(s) 544, 890, 946, 1043, 1177, 1258
NheI GCTAGC 1 cut(s) 851
NlaIV GGNNCC 2 cut(s) 906, 1270
NmeAIII GCCGAG 2 cut(s) 106, 1151
NspI RCATGY 2 cut(s) 203, 396
NspV TTCGAA 1 cut(s) 686
OliI CACNNNNGTG 1 cut(s) 218
PcsI WCGNNNNNNNCGW 1 cut(s) 277
PdmI GAANNNNTTC 1 cut(s) 1310
PfeI GAWTC 2 cut(s) 790, 829
PkrI GCNGC 5 cut(s) 6, 79, 448, 847, 850
PleI GAGTC 2 cut(s) 91, 328
PpsI GAGTC 2 cut(s) 91, 328
Psp6I CCWGG 1 cut(s) 1004
PspGI CCWGG 1 cut(s) 1004
PspN4I GGNNCC 2 cut(s) 906, 1270
PspPI GGNCC 4 cut(s) 56, 119, 482, 904
PstNI CAGNNNCTG 1 cut(s) 446
PsuI RGATCY 2 cut(s) 890, 1258
RsaI GTAC 3 cut(s) 30, 861, 878
RsaNI GTAC 3 cut(s) 29, 860, 877
RseI CAYNNNNRTG 3 cut(s) 218, 641, 1136
SaqAI TTAA 1 cut(s) 737
SatI GCNGC 5 cut(s) 5, 78, 447, 846, 849
Sau3AI GATC 6 cut(s) 544, 890, 946, 1043, 1177, 1258
Sau96I GGNCC 4 cut(s) 56, 119, 482, 904
SchI GAGTC 2 cut(s) 92, 329
ScrFI CCNGG 1 cut(s) 1006
SduI GDGCHC 1 cut(s) 114
SfaNI GCATC 2 cut(s) 446, 682
SfuI TTCGAA 1 cut(s) 686
SinI GGWCC 2 cut(s) 56, 482
SmiMI CAYNNNNRTG 3 cut(s) 218, 641, 1136
Sse9I AATT 4 cut(s) 164, 283, 750, 1306
SsiI CCGC 3 cut(s) 11, 62, 1123
SspI AATATT 1 cut(s) 660
SspMI CTAG 4 cut(s) 182, 420, 852, 1064
StyD4I CCNGG 1 cut(s) 1004
StyI CCWWGG 2 cut(s) 175, 636
TaaI ACNGT 2 cut(s) 269, 433
TaqI TCGA 3 cut(s) 280, 686, 1110
TaqII GACCGA 1 cut(s) 245
TasI AATT 4 cut(s) 164, 283, 750, 1306
TatI WGTACW 1 cut(s) 28
TfiI GAWTC 2 cut(s) 790, 829
Tru1I TTAA 1 cut(s) 737
Tru9I TTAA 1 cut(s) 737
TseI GCWGC 5 cut(s) 4, 77, 446, 845, 848
TspDTI ATGAA 5 cut(s) 177, 321, 553, 588, 786
VpaK11BI GGWCC 2 cut(s) 56, 482
XapI RAATTY 4 cut(s) 164, 283, 750, 1306
XceI RCATGY 2 cut(s) 203, 396
XcmI CCANNNNNNNNNTGG 1 cut(s) 506
XmnI GAANNNNTTC 1 cut(s) 1310
XspI CTAG 4 cut(s) 182, 420, 852, 1064
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.