Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006488.1

Orthogroup ID

OG0012912

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2574

Gene Structure 2574 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006488.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1297 bp

tgatgtactggatttggtggtgattggttgtggtccggcgggtcttgctctggctgccgagtcggctaagttgggattgaaagttgggctcattggccctgacctgcctttcacaaacaactatggtgtttgggaagatgaattcaaagaccttggactagaagggtgtattgagcatgtttggcaggacaccattgtgtatcttgatgacgaaagcgaccccattttgttcggtcgtgcttacggtcgtgtgtgtcgaaatttgctccatgaggagcttttgagaaggtgtgtagagtcaggtgtttcataccttagttcaagggtggagagtattgttgaaggtagcaatggccatagccttatagcatgtgagcatggtatcaatgtctcctctaggcttgctactgttgcatcaggagctgcttcagggaagcttttgcaatatgaggtgggtggtccaaaggtctctgtccaaacagcttatggagtggaggttgaggtggaaagttatccatatgatcccaacctgatgattttcatggattatagagactacacaaaacaaaaagtttcatgtttggaagcagaatatcccacatttctttatgccatggccatgtccccaacaagaatattctttgaggaaacttgcttggcttcgaaagatgccatgccttttgatttattgaagaaaaagctcttgtcaaggttaaagacattgggaattcgtattgtaaaaacttatgaagaggaatggtcttggattccagttgggggttcattaccgaatacagagcaaaagaatttggcatttggtgctgctgctagcatggtacatccagccacagggtactcagtagtgagatctttgtcggaggccccaaaatatgcttctgtgattgcaaagattttgaagcaggatcatcctaaggccagtcttggccgtcaaataaataatcagaatatctcaatgcaagcctggaataccctctggccaccagaaaggaaacgccaaagatcattcttcctgtttggactagcgctcattctgcaactggacattgagggcattaggacattcttcgataccttcttccgcttacctacttggatgtggcagggttttctcgggtcttctctgtcctcggctgatctcatgctctttgccttgtatatgtttgttatagcaccaaatagtttgagaagtcgtcttgtcaaacatctattatcagatcctactggagccactatgataaaaacctatctcacagcaaacttgaattccttcccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006629 GO:0006720 GO:0006721 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009975 GO:0009987 GO:0016108 GO:0016109 GO:0016114 GO:0016116 GO:0016117 GO:0016122 GO:0016123 GO:0016853 GO:0016860 GO:0042440 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0045435 GO:0046148 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 map00906 map01100 map01110

Pfam Domains

Protein Families

Lycopene_cycl

Protein Analysis

431

Amino Acids

47.96

Weight (kDa)

5.9

Isoelectric Point (pI)

42.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57030
fragaria_vesca	FvH4_1g07950
malus_domestica	MD02G1083500.v1.1
prunus_persica	Prupe.7G205600_v2.0.a1
pyrus_communis	pycom02g06600
rosa_chinensis	RchiOBHm_Chr2g0093831
rosa_laevigata	RLG00000016440
rosa_multiflora	Rmu_co8073952.1_g000001 Rmu_sc0003027.1_g000016 Rmu_sc0006488.1_g000001 Rmu_sc0017523.1_g000003
rosa_roxburghii	Rroxscaffold_2G00147770
rosa_rugosa	Rorug02G0040100
rosa_samantha	Rh2AG086700 Rh2AG086800 Rh2BG087100 Rh2CG089500 Rh2DG085200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	112
AciI	CCGC	2 cut(s)	39, 1100
AclWI	GGATC	3 cut(s)	516, 931, 1230
AcoI	YGGCCR	4 cut(s)	353, 616, 944, 996
AcsI	RAATTY	5 cut(s)	141, 260, 727, 806, 1283
AcuI	CTGAAG	1 cut(s)	412
AfaI	GTAC	3 cut(s)	7, 838, 855
AfeI	AGCGCT	1 cut(s)	1045
AfiI	CCNNNNNNNGG	2 cut(s)	777, 849
AgsI	TTSAA	7 cut(s)	80, 146, 322, 342, 692, 917, 1283
AjnI	CCWGG	1 cut(s)	981
AjuI	GAANNNNNNNTTGG	2 cut(s)	878, 910
AleI	CACNNNNGTG	1 cut(s)	195
AluBI	AGCT	5 cut(s)	278, 423, 437, 483, 701
AluI	AGCT	5 cut(s)	278, 423, 437, 483, 701
Alw26I	GTCTC	3 cut(s)	395, 473, 547
AlwI	GGATC	3 cut(s)	516, 931, 1230
AlwNI	CAGNNNCTG	1 cut(s)	423
Ama87I	CYCGRG	1 cut(s)	1131
Aor51HI	AGCGCT	1 cut(s)	1045
AoxI	GGCC	7 cut(s)	95, 353, 616, 880, 934, 944, 996
ApeKI	GCWGC	4 cut(s)	54, 423, 822, 825
ApoI	RAATTY	5 cut(s)	141, 260, 727, 806, 1283
Asp700I	GAANNNNTTC	1 cut(s)	1287
AspLEI	GCGC	1 cut(s)	1046
AspS9I	GGNCC	4 cut(s)	33, 96, 459, 881
AsuHPI	GGTGA	1 cut(s)	32
AsuII	TTCGAA	1 cut(s)	663
AsuNHI	GCTAGC	1 cut(s)	828
AvaI	CYCGRG	1 cut(s)	1131
AvaII	GGWCC	2 cut(s)	33, 459
AxyI	CCTNAGG	1 cut(s)	931
BalI	TGGCCA	3 cut(s)	355, 618, 998
BanII	GRGCYC	1 cut(s)	91
BbsI	GAAGAC	1 cut(s)	1129
BbvI	GCAGC	4 cut(s)	41, 410, 809, 812
BceAI	ACGGC	1 cut(s)	931
BciT130I	CCWGG	1 cut(s)	983
BcoDI	GTCTC	3 cut(s)	395, 473, 547
BfaI	CTAG	4 cut(s)	159, 397, 829, 1041
BfoI	RGCGCY	1 cut(s)	1047
BfuAI	ACCTGC	1 cut(s)	112
BglI	GCCNNNNNGGC	1 cut(s)	63
BglII	AGATCT	1 cut(s)	867
BisI	GCNGC	4 cut(s)	55, 424, 823, 826
BlsI	GCNGC	4 cut(s)	56, 425, 824, 827
Bme1390I	CCNGG	1 cut(s)	983
Bme18I	GGWCC	2 cut(s)	33, 459
BmeT110I	CYCGRG	1 cut(s)	1131
BmgT120I	GGNCC	4 cut(s)	33, 96, 459, 881
BmiI	GGNNCC	2 cut(s)	883, 1247
BmrFI	CCNGG	1 cut(s)	983
BmsI	GCATC	2 cut(s)	423, 659
BmtI	GCTAGC	1 cut(s)	832
BpiI	GAAGAC	1 cut(s)	1129
BpmI	CTGGAG	1 cut(s)	1264
Bpu14I	TTCGAA	1 cut(s)	663
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	3 cut(s)	152, 613, 1147
BsaXI	ACNNNNNCTCC	2 cut(s)	481, 511
Bsc4I	CCNNNNNNNGG	2 cut(s)	777, 849
Bse1I	ACTGG	5 cut(s)	13, 771, 937, 1063, 1247
Bse21I	CCTNAGG	1 cut(s)	931
Bse3DI	GCAATG	1 cut(s)	356
BseBI	CCWGG	1 cut(s)	983
BseDI	CCNNGG	3 cut(s)	152, 613, 1147
BseGI	GGATG	3 cut(s)	839, 926, 1120
BseLI	CCNNNNNNNGG	2 cut(s)	777, 849
BseMI	GCAATG	1 cut(s)	356
BseMII	CTCAG	1 cut(s)	871
BseNI	ACTGG	5 cut(s)	13, 771, 937, 1063, 1247
BseRI	GAGGAG	2 cut(s)	288, 383
BseXI	GCAGC	4 cut(s)	41, 410, 809, 812
Bsh1285I	CGRYCG	2 cut(s)	236, 248
BshFI	GGCC	7 cut(s)	97, 355, 618, 882, 936, 946, 998
BsiEI	CGRYCG	2 cut(s)	236, 248
BsiHKCI	CYCGRG	1 cut(s)	1131
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	608
BslI	CCNNNNNNNGG	2 cut(s)	777, 849
BsmAI	GTCTC	3 cut(s)	395, 473, 547
BsmFI	GGGAC	1 cut(s)	608
BsnI	GGCC	7 cut(s)	97, 355, 618, 882, 936, 946, 998
Bso31I	GGTCTC	1 cut(s)	473
BsoBI	CYCGRG	1 cut(s)	1131
Bsp119I	TTCGAA	1 cut(s)	663
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	6 cut(s)	521, 867, 923, 1020, 1154, 1235
Bsp19I	CCATGG	1 cut(s)	613
BspACI	CCGC	2 cut(s)	39, 1100
BspANI	GGCC	7 cut(s)	97, 355, 618, 882, 936, 946, 998
BspCNI	CTCAG	1 cut(s)	870
BspLI	GGNNCC	2 cut(s)	883, 1247
BspMI	ACCTGC	1 cut(s)	112
BspOI	GCTAGC	1 cut(s)	832
BspPI	GGATC	3 cut(s)	516, 931, 1230
BspT104I	TTCGAA	1 cut(s)	663
BspTNI	GGTCTC	1 cut(s)	473
BsrDI	GCAATG	1 cut(s)	356
BsrI	ACTGG	5 cut(s)	13, 771, 937, 1063, 1247
BssECI	CCNNGG	3 cut(s)	152, 613, 1147
BssMI	GATC	6 cut(s)	521, 867, 923, 1020, 1154, 1235
BssT1I	CCWWGG	2 cut(s)	152, 613
Bst2UI	CCWGG	1 cut(s)	983
Bst4CI	ACNGT	2 cut(s)	246, 410
Bst6I	CTCTTC	1 cut(s)	745
BstAPI	GCANNNNNTGC	1 cut(s)	819
BstBI	TTCGAA	1 cut(s)	663
BstC8I	GCNNGC	3 cut(s)	403, 830, 979
BstDEI	CTNAG	5 cut(s)	67, 315, 857, 931, 1294
BstDSI	CCRYGG	1 cut(s)	613
BstF5I	GGATG	3 cut(s)	839, 926, 1120
BstH2I	RGCGCY	1 cut(s)	1047
BstHHI	GCGC	1 cut(s)	1046
BstKTI	GATC	6 cut(s)	524, 870, 926, 1023, 1157, 1238
BstMAI	GTCTC	3 cut(s)	395, 473, 547
BstMBI	GATC	6 cut(s)	521, 867, 923, 1020, 1154, 1235
BstMCI	CGRYCG	2 cut(s)	236, 248
BstMWI	GCNNNNNNNGC	8 cut(s)	45, 54, 63, 182, 411, 420, 819, 1052
BstNI	CCWGG	1 cut(s)	983
BstNSI	RCATGY	2 cut(s)	180, 373
BstSCI	CCNGG	1 cut(s)	981
BstV1I	GCAGC	4 cut(s)	41, 410, 809, 812
BstV2I	GAAGAC	1 cut(s)	1129
BstX2I	RGATCY	2 cut(s)	867, 1235
BstYI	RGATCY	2 cut(s)	867, 1235
Bsu36I	CCTNAGG	1 cut(s)	931
BsuRI	GGCC	7 cut(s)	97, 355, 618, 882, 936, 946, 998
BtgI	CCRYGG	1 cut(s)	613
BtsCI	GGATG	3 cut(s)	839, 926, 1120
BveI	ACCTGC	1 cut(s)	112
Cac8I	GCNNGC	3 cut(s)	403, 830, 979
CaiI	CAGNNNCTG	1 cut(s)	423
CfoI	GCGC	1 cut(s)	1046
Cfr13I	GGNCC	4 cut(s)	33, 96, 459, 881
Csp6I	GTAC	3 cut(s)	6, 837, 854
CviQI	GTAC	3 cut(s)	6, 837, 854
DdeI	CTNAG	5 cut(s)	67, 315, 857, 931, 1294
DpnI	GATC	6 cut(s)	523, 869, 925, 1022, 1156, 1237
DpnII	GATC	6 cut(s)	521, 867, 923, 1020, 1154, 1235
EaeI	YGGCCR	4 cut(s)	353, 616, 944, 996
Eam1104I	CTCTTC	1 cut(s)	745
EarI	CTCTTC	1 cut(s)	745
Eco130I	CCWWGG	2 cut(s)	152, 613
Eco24I	GRGCYC	1 cut(s)	91
Eco31I	GGTCTC	1 cut(s)	473
Eco47I	GGWCC	2 cut(s)	33, 459
Eco47III	AGCGCT	1 cut(s)	1045
Eco57I	CTGAAG	1 cut(s)	412
Eco81I	CCTNAGG	1 cut(s)	931
Eco88I	CYCGRG	1 cut(s)	1131
EcoO109I	RGGNCCY	1 cut(s)	881
EcoRI	GAATTC	3 cut(s)	141, 727, 1283
EcoRII	CCWGG	1 cut(s)	981
EcoT14I	CCWWGG	2 cut(s)	152, 613
EcoT38I	GRGCYC	1 cut(s)	91
ErhI	CCWWGG	2 cut(s)	152, 613
FaqI	GGGAC	1 cut(s)	608
FauI	CCCGC	1 cut(s)	32
FauNDI	CATATG	1 cut(s)	518
Fnu4HI	GCNGC	4 cut(s)	55, 424, 823, 826
FokI	GGATG	3 cut(s)	826, 913, 1127
FriOI	GRGCYC	1 cut(s)	91
Fsp4HI	GCNGC	4 cut(s)	55, 424, 823, 826
FspBI	CTAG	4 cut(s)	159, 397, 829, 1041
GlaI	GCGC	1 cut(s)	1045
GluI	GCNGC	4 cut(s)	55, 424, 823, 826
GsuI	CTGGAG	1 cut(s)	1264
HaeII	RGCGCY	1 cut(s)	1047
HaeIII	GGCC	7 cut(s)	97, 355, 618, 882, 936, 946, 998
HapII	CCGG	1 cut(s)	36
HhaI	GCGC	1 cut(s)	1046
Hin6I	GCGC	1 cut(s)	1044
HinP1I	GCGC	1 cut(s)	1044
HindIII	AAGCTT	1 cut(s)	435
HinfI	GANTC	3 cut(s)	60, 297, 767
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	32
Hpy188I	TCNGA	3 cut(s)	878, 964, 1235
Hpy188III	TCNNGA	2 cut(s)	204, 418
HpyAV	CCTTC	4 cut(s)	156, 280, 336, 1103
HpyCH4III	ACNGT	2 cut(s)	246, 410
HpyCH4V	TGCA	5 cut(s)	414, 443, 906, 977, 1055
HpyF10VI	GCNNNNNNNGC	8 cut(s)	45, 54, 63, 182, 411, 420, 819, 1052
HpyF3I	CTNAG	5 cut(s)	67, 315, 857, 931, 1294
HspAI	GCGC	1 cut(s)	1044
Kzo9I	GATC	6 cut(s)	521, 867, 923, 1020, 1154, 1235
LmnI	GCTCC	4 cut(s)	271, 275, 420, 1245
Lsp1109I	GCAGC	4 cut(s)	41, 410, 809, 812
LweI	GCATC	2 cut(s)	423, 659
MaeI	CTAG	4 cut(s)	159, 397, 829, 1041
MalI	GATC	6 cut(s)	523, 869, 925, 1022, 1156, 1237
MboI	GATC	6 cut(s)	521, 867, 923, 1020, 1154, 1235
MboII	GAAGA	7 cut(s)	147, 704, 762, 1019, 1076, 1088, 1129
MflI	RGATCY	2 cut(s)	867, 1235
MhlI	GDGCHC	1 cut(s)	91
MlsI	TGGCCA	3 cut(s)	355, 618, 998
MluCI	AATT	5 cut(s)	141, 260, 727, 806, 1283
MluNI	TGGCCA	3 cut(s)	355, 618, 998
MlyI	GAGTC	2 cut(s)	69, 306
MmeI	TCCRAC	1 cut(s)	856
Mox20I	TGGCCA	3 cut(s)	355, 618, 998
MroXI	GAANNNNTTC	1 cut(s)	1287
MscI	TGGCCA	3 cut(s)	355, 618, 998
MseI	TTAA	1 cut(s)	714
MslI	CAYNNNNRTG	2 cut(s)	195, 618
Msp20I	TGGCCA	3 cut(s)	355, 618, 998
MspI	CCGG	1 cut(s)	36
MspR9I	CCNGG	1 cut(s)	983
MvaI	CCWGG	1 cut(s)	983
MwoI	GCNNNNNNNGC	8 cut(s)	45, 54, 63, 182, 411, 420, 819, 1052
NcoI	CCATGG	1 cut(s)	613
NdeI	CATATG	1 cut(s)	518
NdeII	GATC	6 cut(s)	521, 867, 923, 1020, 1154, 1235
NheI	GCTAGC	1 cut(s)	828
NlaIV	GGNNCC	2 cut(s)	883, 1247
NmeAIII	GCCGAG	2 cut(s)	83, 1128
NspI	RCATGY	2 cut(s)	180, 373
NspV	TTCGAA	1 cut(s)	663
OliI	CACNNNNGTG	1 cut(s)	195
PcsI	WCGNNNNNNNCGW	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	1287
PfeI	GAWTC	1 cut(s)	767
PkrI	GCNGC	4 cut(s)	56, 425, 824, 827
PleI	GAGTC	2 cut(s)	68, 305
PpsI	GAGTC	2 cut(s)	68, 305
Psp6I	CCWGG	1 cut(s)	981
PspGI	CCWGG	1 cut(s)	981
PspN4I	GGNNCC	2 cut(s)	883, 1247
PspPI	GGNCC	4 cut(s)	33, 96, 459, 881
PstNI	CAGNNNCTG	1 cut(s)	423
PsuI	RGATCY	2 cut(s)	867, 1235
RsaI	GTAC	3 cut(s)	7, 838, 855
RsaNI	GTAC	3 cut(s)	6, 837, 854
RseI	CAYNNNNRTG	2 cut(s)	195, 618
SaqAI	TTAA	1 cut(s)	714
SatI	GCNGC	4 cut(s)	55, 424, 823, 826
Sau3AI	GATC	6 cut(s)	521, 867, 923, 1020, 1154, 1235
Sau96I	GGNCC	4 cut(s)	33, 96, 459, 881
SchI	GAGTC	2 cut(s)	69, 306
ScrFI	CCNGG	1 cut(s)	983
SduI	GDGCHC	1 cut(s)	91
SfaNI	GCATC	2 cut(s)	423, 659
SfuI	TTCGAA	1 cut(s)	663
SinI	GGWCC	2 cut(s)	33, 459
SmiMI	CAYNNNNRTG	2 cut(s)	195, 618
Sse9I	AATT	5 cut(s)	141, 260, 727, 806, 1283
SsiI	CCGC	2 cut(s)	39, 1100
SspI	AATATT	1 cut(s)	637
SspMI	CTAG	4 cut(s)	159, 397, 829, 1041
StyD4I	CCNGG	1 cut(s)	981
StyI	CCWWGG	2 cut(s)	152, 613
TaaI	ACNGT	2 cut(s)	246, 410
TaqI	TCGA	3 cut(s)	257, 663, 1087
TaqII	GACCGA	1 cut(s)	222
TasI	AATT	5 cut(s)	141, 260, 727, 806, 1283
TatI	WGTACW	1 cut(s)	5
TfiI	GAWTC	1 cut(s)	767
Tru1I	TTAA	1 cut(s)	714
Tru9I	TTAA	1 cut(s)	714
TseI	GCWGC	4 cut(s)	54, 423, 822, 825
TspDTI	ATGAA	6 cut(s)	154, 298, 530, 565, 763, 772
VpaK11BI	GGWCC	2 cut(s)	33, 459
XapI	RAATTY	5 cut(s)	141, 260, 727, 806, 1283
XceI	RCATGY	2 cut(s)	180, 373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	483
XmnI	GAANNNNTTC	1 cut(s)	1287
XspI	CTAG	4 cut(s)	159, 397, 829, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.