pycom02g06600

Lycopene epsilon cyclase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
Physical Location & Seq
Forward (+)
4578066 .. 4581412
3347 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g06600.7

Sequence Viewer

Length: 1632 bp
ATGGACTGCGTTGCAGCAATGACGGCGTCGTTTTACCCGACCTGGAGGGTGAGGAGAAGAGGAGGACTTGTGGGTGGAAAGGAAGGTCCTTTTTTCCGGTATGGTTTGTGCAACAAGGTTTCTCTGCTGCGAGTGAGAGCGAGTGCAGGAGGCGAAGGGGGCGGTGTCGGCGTGGTGGTGAAGGAAGATTTTGCGGACGAGGAGGATTTCATGAAGGGCGGCGGGCCGGAACTGCTCTTAGTTCAAATGCAGCAGAAAAAGGTCATGGAGAAGCAGTCCAAGCTCGCTGACAAGCTACCGCCAATACCAGTAGCAGATAGTGTTCTGGATTTGGTGGTGATTGGTTGTGGTCCGGCAGGACTTGCTCTGGCTGCAGAATCAGCCAAGTTGGGATTAAAAGTTGGGCTTATTGGCCCGGATCTCCCTTTCACAAACAACTATGGTGTTTGGGAGGATGAATTCAAAGATCTTGGACTTGAAGGGTGTATTGAGCATGTTTGGCAGAACACCATTGTGTATCTTGACGATGATTCGGACCCCATTATGATCGATCGTGCTTATGGTCGTGTTTGTCGAGACATGCTACATGAGGAGCTCTTGAGAAAGTGTGTCGAGTCAGGTGTTTCGTACCTCGATTCAAGGGTGGAAAGTATTGTTGAAGCTAGCAATGGGATTAGTCTTGTATCCTGTGGCCACAATATTGTTGTTTCGTGCAGGCTTGCTACTGTTGCATCAGGAGCTGCTTCGGGGAAGCTTTTGCAGTACGAGGTGGGTGGTCCAAAGGTGTCTGTCCAAACAGCATATGGTATCGAGGTTGAGGTGGAAAATAACCCATATGATCCCGAAGTGATGGTTTTCATGGATTATAGAGACTACAAGAAACAAGAAGTTCGGTCTTTAGAAGCAGAATATCCAACGTTTCTTTATGTCATGCCCATGTCTCCGACTAGATTGTTCTTTGAGGAAACTTGCTTGGCTTCTAAAGAAGCCATGCCTTTTGATTTATTGAAGAAAAAGCTCTTGTCACGGTTACAGACAATGGGAATCCGTATTACAAAAACTTATGAAGAGGAATGGTCTTGGATTCCGGTTGGTGGTTCCTTACCAAATACAGAGCAAAAGAACCTAGCATTTGGTGCCGCTGCTTGCATGGTACATCCTGCCACAGGATATTCAGTCGCAAGGTCTTTGTCGGAGGCTCCAAAATACGCTTCTGTGATTGCAATTATTTTGAAGCCAGATCATAATAAGGCCATTCACCGCAGCCAAATAAGTAATGAGAACATCTCGATGCTAGCGTGGAATACGCTCTGGCCGCAAGAAAGGAAACGCCAAAGATCATTCTTTCTTTTCGGACTAGCGCTTATTCTGCAACAGGACATCGAGGGCATCAGGATATTCTTTCACACTTTCTTCCGCTTACCCACCTGGATGTGGCAGGGTTTCCTCGGCTCTACATTGTCCTCGGCTGATCTCATCCTTTTCGCGTTGTATATGTTTGTTTTAGCACCAAATAACTTGAGAAAGAACCTCGTCAGACACCTACTTTCTGATCCTTCCGGAGCCACTATGATTAGAACCTATTTCACATTCCCGTCCTCCGGCATAATAACACAGTTTAGAGTACCCTAA

Protein Analysis

544

Amino Acids

60.42

Weight (kDa)

6.15

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1136
AccII CGCG 1 cut(s) 1487
AccIII TCCGGA 1 cut(s) 1559
AciI CCGC 9 cut(s) 162, 194, 219, 222, 299, 1140, 1261, 1316, 1417
AclI AACGTT 1 cut(s) 917
AclWI GGATC 3 cut(s) 426, 833, 1547
AcoI YGGCCR 2 cut(s) 691, 1313
AcsI RAATTY 1 cut(s) 458
AcyI GRCGYC 1 cut(s) 26
AfaI GTAC 4 cut(s) 629, 764, 1155, 1626
AfeI AGCGCT 1 cut(s) 1362
AfiI CCNNNNNNNGG 4 cut(s) 1094, 1166, 1434, 1601
AgsI TTSAA 7 cut(s) 245, 463, 479, 639, 659, 1009, 1234
AjnI CCWGG 2 cut(s) 41, 1427
AjuI GAANNNNNNNTTGG 2 cut(s) 1195, 1227
AleI CACNNNNGTG 1 cut(s) 512
AluBI AGCT 7 cut(s) 283, 295, 595, 662, 740, 754, 1018
AluI AGCT 7 cut(s) 283, 295, 595, 662, 740, 754, 1018
Alw21I GWGCWC 1 cut(s) 597
Alw26I GTCTC 3 cut(s) 570, 864, 945
AlwI GGATC 3 cut(s) 426, 833, 1547
AlwNI CAGNNNCTG 1 cut(s) 740
Aor13HI TCCGGA 1 cut(s) 1559
Aor51HI AGCGCT 1 cut(s) 1362
AoxI GGCC 5 cut(s) 224, 412, 691, 1251, 1313
ApeKI GCWGC 7 cut(s) 14, 127, 250, 371, 740, 1142, 1263
ApoI RAATTY 1 cut(s) 458
AspLEI GCGC 1 cut(s) 1363
AspS9I GGNCC 6 cut(s) 86, 224, 350, 413, 535, 776
AsuC2I CCSGG 1 cut(s) 416
AsuHPI GGTGA 4 cut(s) 61, 190, 349, 1250
AsuNHI GCTAGC 2 cut(s) 662, 1294
AvaII GGWCC 4 cut(s) 86, 350, 535, 776
BalI TGGCCA 1 cut(s) 693
BanI GGYRCC 1 cut(s) 1136
BanII GRGCYC 1 cut(s) 597
Bbv12I GWGCWC 1 cut(s) 597
BbvI GCAGC 7 cut(s) 26, 114, 262, 358, 727, 1129, 1275
BccI CCATC 1 cut(s) 844
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 2 cut(s) 43, 1429
BciVI GTATCC 1 cut(s) 694
BcnI CCSGG 1 cut(s) 416
BcoDI GTCTC 3 cut(s) 570, 864, 945
BfaI CTAG 5 cut(s) 663, 948, 1127, 1295, 1358
BfmI CTRYAG 1 cut(s) 372
BfoI RGCGCY 1 cut(s) 1364
BfuI GTATCC 1 cut(s) 694
BglII AGATCT 1 cut(s) 466
Bme1390I CCNGG 3 cut(s) 43, 416, 1429
Bme18I GGWCC 4 cut(s) 86, 350, 535, 776
BmgT120I GGNCC 6 cut(s) 86, 224, 350, 413, 535, 776
BmiI GGNNCC 5 cut(s) 537, 1099, 1138, 1200, 1564
BmrFI CCNGG 3 cut(s) 43, 416, 1429
BmsI GCATC 3 cut(s) 740, 1281, 1398
BmtI GCTAGC 2 cut(s) 666, 1298
BplI GAGNNNNNCTC 2 cut(s) 1271, 1303
BpmI CTGGAG 1 cut(s) 64
BpuEI CTTGAG 2 cut(s) 619, 1540
BpuMI CCSGG 1 cut(s) 416
Bsa29I ATCGAT 1 cut(s) 549
BsaHI GRCGYC 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 1447, 1464
BsaWI WCCGGW 3 cut(s) 96, 1087, 1559
BsaXI ACNNNNNCTCC 4 cut(s) 54, 84, 260, 290
Bsc4I CCNNNNNNNGG 4 cut(s) 1094, 1166, 1434, 1601
Bse1I ACTGG 1 cut(s) 308
Bse3DI GCAATG 2 cut(s) 24, 673
BseAI TCCGGA 1 cut(s) 1559
BseBI CCWGG 2 cut(s) 43, 1429
BseCI ATCGAT 1 cut(s) 549
BseDI CCNNGG 2 cut(s) 1447, 1464
BseGI GGATG 4 cut(s) 460, 1156, 1437, 1476
BseLI CCNNNNNNNGG 4 cut(s) 1094, 1166, 1434, 1601
BseMI GCAATG 2 cut(s) 24, 673
BseNI ACTGG 1 cut(s) 308
BseRI GAGGAG 4 cut(s) 67, 75, 215, 605
BseXI GCAGC 7 cut(s) 26, 114, 262, 358, 727, 1129, 1275
BsgI GTGCAG 2 cut(s) 165, 733
Bsh1236I CGCG 1 cut(s) 1487
Bsh1285I CGRYCG 1 cut(s) 553
BshFI GGCC 5 cut(s) 226, 414, 693, 1253, 1315
BshNI GGYRCC 1 cut(s) 1136
BshVI ATCGAT 1 cut(s) 549
BsiEI CGRYCG 1 cut(s) 553
BsiHKAI GWGCWC 1 cut(s) 597
BsiSI CCGG 7 cut(s) 97, 227, 353, 416, 1088, 1560, 1602
BslI CCNNNNNNNGG 4 cut(s) 1094, 1166, 1434, 1601
BsmAI GTCTC 3 cut(s) 570, 864, 945
BsnI GGCC 5 cut(s) 226, 414, 693, 1253, 1315
Bsp1286I GDGCHC 1 cut(s) 597
Bsp13I TCCGGA 1 cut(s) 1559
Bsp143I GATC 9 cut(s) 418, 466, 546, 550, 838, 1240, 1337, 1471, 1552
BspACI CCGC 9 cut(s) 162, 194, 219, 222, 299, 1140, 1261, 1316, 1417
BspANI GGCC 5 cut(s) 226, 414, 693, 1253, 1315
BspDI ATCGAT 1 cut(s) 549
BspEI TCCGGA 1 cut(s) 1559
BspFNI CGCG 1 cut(s) 1487
BspHI TCATGA 1 cut(s) 210
BspLI GGNNCC 5 cut(s) 537, 1099, 1138, 1200, 1564
BspMAI CTGCAG 1 cut(s) 376
BspOI GCTAGC 2 cut(s) 666, 1298
BspPI GGATC 3 cut(s) 426, 833, 1547
BspT107I GGYRCC 1 cut(s) 1136
BsrDI GCAATG 2 cut(s) 24, 673
BsrI ACTGG 1 cut(s) 308
BssECI CCNNGG 2 cut(s) 1447, 1464
BssMI GATC 9 cut(s) 418, 466, 546, 550, 838, 1240, 1337, 1471, 1552
BssNI GRCGYC 1 cut(s) 26
Bst2UI CCWGG 2 cut(s) 43, 1429
Bst4CI ACNGT 3 cut(s) 727, 1029, 1617
Bst6I CTCTTC 2 cut(s) 52, 1062
BstACI GRCGYC 1 cut(s) 26
BstAPI GCANNNNNTGC 2 cut(s) 362, 1136
BstC8I GCNNGC 7 cut(s) 224, 285, 664, 716, 720, 1147, 1296
BstDEI CTNAG 1 cut(s) 238
BstENI CCTNNNNNAGG 1 cut(s) 1164
BstF5I GGATG 4 cut(s) 460, 1156, 1437, 1476
BstFNI CGCG 1 cut(s) 1487
BstH2I RGCGCY 1 cut(s) 1364
BstHHI GCGC 1 cut(s) 1363
BstKTI GATC 9 cut(s) 421, 469, 549, 553, 841, 1243, 1340, 1474, 1555
BstMAI GTCTC 3 cut(s) 570, 864, 945
BstMBI GATC 9 cut(s) 418, 466, 546, 550, 838, 1240, 1337, 1471, 1552
BstMCI CGRYCG 1 cut(s) 553
BstNI CCWGG 2 cut(s) 43, 1429
BstNSI RCATGY 2 cut(s) 497, 583
BstSCI CCNGG 3 cut(s) 41, 414, 1427
BstSFI CTRYAG 1 cut(s) 372
BstUI CGCG 1 cut(s) 1487
BstV1I GCAGC 7 cut(s) 26, 114, 262, 358, 727, 1129, 1275
BstX2I RGATCY 2 cut(s) 418, 466
BstYI RGATCY 2 cut(s) 418, 466
Bsu15I ATCGAT 1 cut(s) 549
BsuI GTATCC 1 cut(s) 694
BsuRI GGCC 5 cut(s) 226, 414, 693, 1253, 1315
BsuTUI ATCGAT 1 cut(s) 549
BtsCI GGATG 4 cut(s) 460, 1156, 1437, 1476
Cac8I GCNNGC 7 cut(s) 224, 285, 664, 716, 720, 1147, 1296
CaiI CAGNNNCTG 1 cut(s) 740
CciI TCATGA 1 cut(s) 210
CfoI GCGC 1 cut(s) 1363
Cfr13I GGNCC 6 cut(s) 86, 224, 350, 413, 535, 776
ClaI ATCGAT 1 cut(s) 549
CseI GACGC 1 cut(s) 15
Csp6I GTAC 4 cut(s) 628, 763, 1154, 1625
CviQI GTAC 4 cut(s) 628, 763, 1154, 1625
DdeI CTNAG 1 cut(s) 238
DpnI GATC 9 cut(s) 420, 468, 548, 552, 840, 1242, 1339, 1473, 1554
DpnII GATC 9 cut(s) 418, 466, 546, 550, 838, 1240, 1337, 1471, 1552
EaeI YGGCCR 2 cut(s) 691, 1313
Eam1104I CTCTTC 2 cut(s) 52, 1062
EarI CTCTTC 2 cut(s) 52, 1062
Ecl136II GAGCTC 1 cut(s) 595
Eco24I GRGCYC 1 cut(s) 597
Eco47I GGWCC 4 cut(s) 86, 350, 535, 776
Eco47III AGCGCT 1 cut(s) 1362
Eco53kI GAGCTC 1 cut(s) 595
EcoICRI GAGCTC 1 cut(s) 595
EcoNI CCTNNNNNAGG 1 cut(s) 1164
EcoO109I RGGNCCY 1 cut(s) 86
EcoRI GAATTC 1 cut(s) 458
EcoRII CCWGG 2 cut(s) 41, 1427
EcoT38I GRGCYC 1 cut(s) 597
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FauI CCCGC 1 cut(s) 215
FauNDI CATATG 2 cut(s) 802, 835
FokI GGATG 4 cut(s) 467, 1143, 1444, 1463
FriOI GRGCYC 1 cut(s) 597
FspBI CTAG 5 cut(s) 663, 948, 1127, 1295, 1358
GlaI GCGC 1 cut(s) 1362
GsuI CTGGAG 1 cut(s) 64
HaeII RGCGCY 1 cut(s) 1364
HaeIII GGCC 5 cut(s) 226, 414, 693, 1253, 1315
HapII CCGG 7 cut(s) 97, 227, 353, 416, 1088, 1560, 1602
HgaI GACGC 1 cut(s) 15
HhaI GCGC 1 cut(s) 1363
Hin1I GRCGYC 1 cut(s) 26
Hin6I GCGC 1 cut(s) 1361
HinP1I GCGC 1 cut(s) 1361
HindIII AAGCTT 1 cut(s) 752
HinfI GANTC 6 cut(s) 377, 530, 614, 635, 1044, 1084
HpaII CCGG 7 cut(s) 97, 227, 353, 416, 1088, 1560, 1602
HphI GGTGA 4 cut(s) 61, 190, 349, 1250
Hpy188I TCNGA 6 cut(s) 535, 945, 1195, 1355, 1538, 1552
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 6 cut(s) 77, 149, 175, 208, 473, 1566
HpyCH4III ACNGT 3 cut(s) 727, 1029, 1617
HpyCH4IV ACGT 1 cut(s) 917
HpyF3I CTNAG 1 cut(s) 238
HpySE526I ACGT 1 cut(s) 917
Hsp92I GRCGYC 1 cut(s) 26
HspAI GCGC 1 cut(s) 1361
Kpn2I TCCGGA 1 cut(s) 1559
Kzo9I GATC 9 cut(s) 418, 466, 546, 550, 838, 1240, 1337, 1471, 1552
LmnI GCTCC 4 cut(s) 592, 737, 1204, 1562
Lsp1109I GCAGC 7 cut(s) 26, 114, 262, 358, 727, 1129, 1275
LweI GCATC 3 cut(s) 740, 1281, 1398
MaeI CTAG 5 cut(s) 663, 948, 1127, 1295, 1358
MaeII ACGT 1 cut(s) 917
MaeIII GTNAC 2 cut(s) 1023, 1029
MalI GATC 9 cut(s) 420, 468, 548, 552, 840, 1242, 1339, 1473, 1554
MboI GATC 9 cut(s) 418, 466, 546, 550, 838, 1240, 1337, 1471, 1552
MboII GAAGA 5 cut(s) 69, 197, 1021, 1079, 1405
MflI RGATCY 2 cut(s) 418, 466
MhlI GDGCHC 1 cut(s) 597
MlsI TGGCCA 1 cut(s) 693
MluCI AATT 2 cut(s) 458, 1224
MluNI TGGCCA 1 cut(s) 693
MlyI GAGTC 1 cut(s) 623
MmeI TCCRAC 3 cut(s) 938, 968, 1173
Mox20I TGGCCA 1 cut(s) 693
MroI TCCGGA 1 cut(s) 1559
MscI TGGCCA 1 cut(s) 693
MseI TTAA 1 cut(s) 395
MslI CAYNNNNRTG 4 cut(s) 512, 935, 1289, 1430
Msp20I TGGCCA 1 cut(s) 693
MspA1I CMGCKG 1 cut(s) 1142
MspI CCGG 7 cut(s) 97, 227, 353, 416, 1088, 1560, 1602
MspR9I CCNGG 3 cut(s) 43, 416, 1429
MvaI CCWGG 2 cut(s) 43, 1429
MvnI CGCG 1 cut(s) 1487
NciI CCSGG 1 cut(s) 416
NdeI CATATG 2 cut(s) 802, 835
NdeII GATC 9 cut(s) 418, 466, 546, 550, 838, 1240, 1337, 1471, 1552
NheI GCTAGC 2 cut(s) 662, 1294
NlaIV GGNNCC 5 cut(s) 537, 1099, 1138, 1200, 1564
NmeAIII GCCGAG 2 cut(s) 1428, 1445
NmuCI GTSAC 1 cut(s) 1023
NspI RCATGY 2 cut(s) 497, 583
OliI CACNNNNGTG 1 cut(s) 512
PagI TCATGA 1 cut(s) 210
PcsI WCGNNNNNNNCGW 3 cut(s) 35, 571, 1295
PfeI GAWTC 5 cut(s) 377, 530, 635, 1044, 1084
PflFI GACNNNGTC 1 cut(s) 25
Ple19I CGATCG 1 cut(s) 553
PleI GAGTC 1 cut(s) 622
PpsI GAGTC 1 cut(s) 622
PpuMI RGGWCCY 1 cut(s) 86
Psp124BI GAGCTC 1 cut(s) 597
Psp1406I AACGTT 1 cut(s) 917
Psp5II RGGWCCY 1 cut(s) 86
Psp6I CCWGG 2 cut(s) 41, 1427
PspGI CCWGG 2 cut(s) 41, 1427
PspN4I GGNNCC 5 cut(s) 537, 1099, 1138, 1200, 1564
PspPI GGNCC 6 cut(s) 86, 224, 350, 413, 535, 776
PspPPI RGGWCCY 1 cut(s) 86
PstI CTGCAG 1 cut(s) 376
PstNI CAGNNNCTG 1 cut(s) 740
PsuI RGATCY 2 cut(s) 418, 466
PsyI GACNNNGTC 1 cut(s) 25
PvuI CGATCG 1 cut(s) 553
RsaI GTAC 4 cut(s) 629, 764, 1155, 1626
RsaNI GTAC 4 cut(s) 628, 763, 1154, 1625
RseI CAYNNNNRTG 4 cut(s) 512, 935, 1289, 1430
SacI GAGCTC 1 cut(s) 597
SaqAI TTAA 1 cut(s) 395
Sau3AI GATC 9 cut(s) 418, 466, 546, 550, 838, 1240, 1337, 1471, 1552
Sau96I GGNCC 6 cut(s) 86, 224, 350, 413, 535, 776
SchI GAGTC 1 cut(s) 623
ScrFI CCNGG 3 cut(s) 43, 416, 1429
SduI GDGCHC 1 cut(s) 597
SfaNI GCATC 3 cut(s) 740, 1281, 1398
SfcI CTRYAG 1 cut(s) 372
SinI GGWCC 4 cut(s) 86, 350, 535, 776
SmiMI CAYNNNNRTG 4 cut(s) 512, 935, 1289, 1430
SmlI CTYRAG 2 cut(s) 598, 1519
SmoI CTYRAG 2 cut(s) 598, 1519
Sse9I AATT 2 cut(s) 458, 1224
SsiI CCGC 9 cut(s) 162, 194, 219, 222, 299, 1140, 1261, 1316, 1417
SspI AATATT 1 cut(s) 700
SspMI CTAG 5 cut(s) 663, 948, 1127, 1295, 1358
SstI GAGCTC 1 cut(s) 597
StyD4I CCNGG 3 cut(s) 41, 414, 1427
TaaI ACNGT 3 cut(s) 727, 1029, 1617
TaiI ACGT 1 cut(s) 920
TaqI TCGA 7 cut(s) 549, 574, 612, 633, 810, 1289, 1383
TaqII GACCGA 1 cut(s) 882
TasI AATT 2 cut(s) 458, 1224
TauI GCSGC 3 cut(s) 222, 1142, 1318
TfiI GAWTC 5 cut(s) 377, 530, 635, 1044, 1084
Tru1I TTAA 1 cut(s) 395
Tru9I TTAA 1 cut(s) 395
TseFI GTSAC 1 cut(s) 1023
TseI GCWGC 7 cut(s) 14, 127, 250, 371, 740, 1142, 1263
Tsp45I GTSAC 1 cut(s) 1023
TspDTI ATGAA 5 cut(s) 199, 227, 471, 847, 1080
TspGWI ACGGA 1 cut(s) 1037
Tth111I GACNNNGTC 1 cut(s) 25
VpaK11BI GGWCC 4 cut(s) 86, 350, 535, 776
XagI CCTNNNNNAGG 1 cut(s) 1164
XapI RAATTY 1 cut(s) 458
XceI RCATGY 2 cut(s) 497, 583
XcmI CCANNNNNNNNNTGG 1 cut(s) 800
XspI CTAG 5 cut(s) 663, 948, 1127, 1295, 1358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.