Prupe.7G220000_v2.0.a1

Belongs to the cytochrome b5 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0010898
Physical Location & Seq
Reverse (-)
19730464 .. 19732741
2278 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G220000.2

Sequence Viewer

Length: 357 bp
ATGATGATAGCTGCGGTCGCACTGGTTGTGGTTATTCTTCTGGTAGCTTTCATCTTGATCCCACGAGGCCCAAAATATGGGCATACAAAAAAAGTTGATTCAAATGTTACATATGATAAGCCAGCCAGAATGTATACTAAAGCTGAAGTCTCTTTGCATAATAAGAGAACAGATTGTTGGGTAATTATCAAAGACAAGGTATATGATGTTACCTCATATGTAGAGGAGCACCCAGGTGGTGATGCCATCTTAGATCATGCTGGGGATGACTCAACCGAAGGGTTTTTCGGGCCACAGCATGCTACCCGAGTGTTTGACATGATTAACGACTTTTATATCGGTGATCTGAAGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyt-b5

Protein Analysis

119

Amino Acids

13.23

Weight (kDa)

5.89

Isoelectric Point (pI)

30.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010898)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60660
fragaria_vesca FvH4_1g06100 FvH4_1g06100 FvH4_1g06100
malus_domestica MD02G1065500.v1.1
prunus_persica Prupe.7G220000_v2.0.a1 Prupe.7G220000_v2.0.a1
pyrus_communis pycom02g05160
rosa_chinensis RchiOBHm_Chr2g0091851
rosa_laevigata RLG00000016257
rosa_multiflora Rmu_co8418845.1_g000001
rosa_roxburghii Rroxscaffold_2G00149670 Rroxscaffold_2G00149680
rosa_rugosa Rorug02G0021500
rosa_samantha Rh2AG066300 Rh2AG066500 Rh2BG065700 Rh2CG067100 Rh2DG065500
rosa_wichuraiana Rw2G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 77
AccI GTMKAC 1 cut(s) 134
AciI CCGC 1 cut(s) 14
AclWI GGATC 1 cut(s) 52
AcuI CTGAAG 1 cut(s) 165
AfiI CCNNNNNNNGG 1 cut(s) 77
AgsI TTSAA 1 cut(s) 102
AjnI CCWGG 1 cut(s) 232
AjuI GAANNNNNNNTTGG 2 cut(s) 160, 192
AleI CACNNNNGTG 1 cut(s) 234
AluBI AGCT 4 cut(s) 11, 47, 143, 352
AluI AGCT 4 cut(s) 11, 47, 143, 352
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 1 cut(s) 154
AlwI GGATC 1 cut(s) 52
Ama87I CYCGRG 1 cut(s) 306
AoxI GGCC 2 cut(s) 67, 290
ApeKI GCWGC 1 cut(s) 11
AspS9I GGNCC 2 cut(s) 68, 290
AsuHPI GGTGA 2 cut(s) 251, 353
AvaI CYCGRG 1 cut(s) 306
BauI CACGAG 1 cut(s) 63
Bbv12I GWGCWC 1 cut(s) 231
BccI CCATC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 234
BcoDI GTCTC 1 cut(s) 154
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 234
BmeT110I CYCGRG 1 cut(s) 306
BmgT120I GGNCC 2 cut(s) 68, 290
BmrFI CCNGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 232
BsaJI CCNNGG 1 cut(s) 232
Bsc4I CCNNNNNNNGG 1 cut(s) 77
Bse1I ACTGG 1 cut(s) 27
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 1 cut(s) 232
BseGI GGATG 1 cut(s) 271
BseLI CCNNNNNNNGG 1 cut(s) 77
BseNI ACTGG 1 cut(s) 27
BseRI GAGGAG 1 cut(s) 239
BseYI CCCAGC 1 cut(s) 260
Bsh1285I CGRYCG 1 cut(s) 18
BshFI GGCC 2 cut(s) 69, 292
BsiEI CGRYCG 1 cut(s) 18
BsiHKAI GWGCWC 1 cut(s) 231
BsiHKCI CYCGRG 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 154
BsnI GGCC 2 cut(s) 69, 292
BsoBI CYCGRG 1 cut(s) 306
Bsp1286I GDGCHC 1 cut(s) 231
Bsp143I GATC 3 cut(s) 57, 253, 343
BspACI CCGC 1 cut(s) 14
BspANI GGCC 2 cut(s) 69, 292
BspPI GGATC 1 cut(s) 52
BsrI ACTGG 1 cut(s) 27
BssECI CCNNGG 1 cut(s) 232
BssMI GATC 3 cut(s) 57, 253, 343
BssNAI GTATAC 1 cut(s) 135
BssSI CACGAG 1 cut(s) 63
Bst1107I GTATAC 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 234
BstC8I GCNNGC 2 cut(s) 123, 300
BstDEI CTNAG 1 cut(s) 250
BstF5I GGATG 1 cut(s) 271
BstKTI GATC 3 cut(s) 60, 256, 346
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 3 cut(s) 57, 253, 343
BstMCI CGRYCG 1 cut(s) 18
BstMWI GCNNNNNNNGC 1 cut(s) 17
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 1 cut(s) 302
BstSCI CCNGG 1 cut(s) 232
BstZ17I GTATAC 1 cut(s) 135
BsuRI GGCC 2 cut(s) 69, 292
BtsCI GGATG 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 20
Cac8I GCNNGC 2 cut(s) 123, 300
Cfr13I GGNCC 2 cut(s) 68, 290
CviAII CATG 3 cut(s) 257, 299, 319
CviJI RGCY 8 cut(s) 11, 47, 69, 121, 125, 143, 292, 352
CviKI_1 RGCY 8 cut(s) 11, 47, 69, 121, 125, 143, 292, 352
DdeI CTNAG 1 cut(s) 250
DpnI GATC 3 cut(s) 59, 255, 345
DpnII GATC 3 cut(s) 57, 253, 343
Eco57I CTGAAG 1 cut(s) 165
Eco88I CYCGRG 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 232
FaeI CATG 3 cut(s) 260, 302, 322
FatI CATG 3 cut(s) 256, 298, 318
FauNDI CATATG 2 cut(s) 112, 217
FblI GTMKAC 1 cut(s) 134
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 278
Fsp4HI GCNGC 1 cut(s) 12
GluI GCNGC 1 cut(s) 12
GsaI CCCAGC 1 cut(s) 264
HaeIII GGCC 2 cut(s) 69, 292
Hin1II CATG 3 cut(s) 260, 302, 322
HinfI GANTC 2 cut(s) 98, 269
HphI GGTGA 2 cut(s) 251, 353
Hpy166II GTNNAC 1 cut(s) 135
Hpy188I TCNGA 1 cut(s) 348
Hpy188III TCNNGA 1 cut(s) 55
Hpy8I GTNNAC 1 cut(s) 135
HpyAV CCTTC 1 cut(s) 272
HpyCH4V TGCA 1 cut(s) 157
HpyF10VI GCNNNNNNNGC 1 cut(s) 17
HpyF3I CTNAG 1 cut(s) 250
Hsp92II CATG 3 cut(s) 260, 302, 322
Kzo9I GATC 3 cut(s) 57, 253, 343
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 7 cut(s) 8, 26, 135, 139, 219, 246, 246
LweI GCATC 1 cut(s) 232
MaeIII GTNAC 2 cut(s) 106, 208
MalI GATC 3 cut(s) 59, 255, 345
MboI GATC 3 cut(s) 57, 253, 343
MboII GAAGA 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 231
MluCI AATT 1 cut(s) 183
MlyI GAGTC 1 cut(s) 263
MnlI CCTC 3 cut(s) 59, 217, 223
MseI TTAA 1 cut(s) 324
MslI CAYNNNNRTG 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 234
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 1 cut(s) 17
NdeI CATATG 2 cut(s) 112, 217
NdeII GATC 3 cut(s) 57, 253, 343
NlaIII CATG 3 cut(s) 260, 302, 322
NspI RCATGY 1 cut(s) 302
OliI CACNNNNGTG 1 cut(s) 234
PaeI GCATGC 1 cut(s) 302
PfeI GAWTC 1 cut(s) 98
PflMI CCANNNNNTGG 1 cut(s) 77
PkrI GCNGC 1 cut(s) 13
PleI GAGTC 1 cut(s) 263
PpsI GAGTC 1 cut(s) 263
Psp6I CCWGG 1 cut(s) 232
PspFI CCCAGC 1 cut(s) 260
PspGI CCWGG 1 cut(s) 232
PspPI GGNCC 2 cut(s) 68, 290
RseI CAYNNNNRTG 1 cut(s) 234
SaqAI TTAA 1 cut(s) 324
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 3 cut(s) 57, 253, 343
Sau96I GGNCC 2 cut(s) 68, 290
SchI GAGTC 1 cut(s) 263
ScrFI CCNGG 1 cut(s) 234
SduI GDGCHC 1 cut(s) 231
SetI ASST 7 cut(s) 13, 49, 145, 201, 215, 238, 354
SfaNI GCATC 1 cut(s) 232
SmiMI CAYNNNNRTG 1 cut(s) 234
SphI GCATGC 1 cut(s) 302
Sse9I AATT 1 cut(s) 183
SsiI CCGC 1 cut(s) 14
StyD4I CCNGG 1 cut(s) 232
TasI AATT 1 cut(s) 183
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 1 cut(s) 324
Tru9I TTAA 1 cut(s) 324
TscAI CASTG 1 cut(s) 27
TseI GCWGC 1 cut(s) 11
TspDTI ATGAA 1 cut(s) 40
TspRI CASTG 1 cut(s) 27
Van91I CCANNNNNTGG 1 cut(s) 77
XceI RCATGY 1 cut(s) 302
XmiI GTMKAC 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.