Rmu_co8418845.1_g000001

heme binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8418845.1
OG0010898
Physical Location & Seq
Forward (+)
1 .. 948
948 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8418845.1_g000001.1.cds

Sequence Viewer

Length: 308 bp
cagtggaaggagctcagcttggaaatatgattctagctgtggtggcattgcttctgtgtgtctttttaggagctttcgttctgatcccatctgggaatacaaaaaacgttaagtcaaatgctaaagctgacaagacagccaagatatactctaaagctgaggtttctttgcataataaacgaacagattgttgggtgattatcaaaaacaaggtgtatgaccttacaccatatgtagaggtacacccgggtggtgatgccatcctcgcacacgctggggatgattcaactgttgggttttatgggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyt-b5

Protein Analysis

101

Amino Acids

10.78

Weight (kDa)

7.94

Isoelectric Point (pI)

22.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010898)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G60660
fragaria_vesca FvH4_1g06100 FvH4_1g06100 FvH4_1g06100
malus_domestica MD02G1065500.v1.1
prunus_persica Prupe.7G220000_v2.0.a1 Prupe.7G220000_v2.0.a1
pyrus_communis pycom02g05160
rosa_chinensis RchiOBHm_Chr2g0091851
rosa_laevigata RLG00000016257
rosa_multiflora Rmu_co8418845.1_g000001
rosa_roxburghii Rroxscaffold_2G00149670 Rroxscaffold_2G00149680
rosa_rugosa Rorug02G0021500
rosa_samantha Rh2AG066300 Rh2AG066500 Rh2BG065700 Rh2CG067100 Rh2DG065500
rosa_wichuraiana Rw2G005440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 107
AclWI GGATC 1 cut(s) 78
AfaI GTAC 1 cut(s) 242
AgsI TTSAA 1 cut(s) 287
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
AleI CACNNNNGTG 1 cut(s) 248
AloI GAACNNNNNNTCC 2 cut(s) 62, 94
AluBI AGCT 6 cut(s) 13, 18, 37, 73, 127, 157
AluI AGCT 6 cut(s) 13, 18, 37, 73, 127, 157
Alw21I GWGCWC 1 cut(s) 15
AlwI GGATC 1 cut(s) 78
Ama87I CYCGRG 1 cut(s) 246
AsuC2I CCSGG 2 cut(s) 247, 248
AsuHPI GGTGA 2 cut(s) 207, 265
AvaI CYCGRG 1 cut(s) 246
BanII GRGCYC 1 cut(s) 15
Bbv12I GWGCWC 1 cut(s) 15
BbvCI CCTCAGC 1 cut(s) 158
BccI CCATC 2 cut(s) 96, 268
BcnI CCSGG 2 cut(s) 247, 248
BfaI CTAG 1 cut(s) 34
BlpI GCTNAGC 1 cut(s) 14
Bme1390I CCNGG 2 cut(s) 247, 248
BmeT110I CYCGRG 1 cut(s) 246
BmrFI CCNGG 2 cut(s) 247, 248
BmsI GCATC 1 cut(s) 246
Bpu10I CCTNAGC 1 cut(s) 158
Bpu1102I GCTNAGC 1 cut(s) 14
BpuMI CCSGG 2 cut(s) 247, 248
BsaJI CCNNGG 1 cut(s) 246
BsaXI ACNNNNNCTCC 2 cut(s) 62, 92
Bse3DI GCAATG 1 cut(s) 46
BseDI CCNNGG 1 cut(s) 246
BseGI GGATG 2 cut(s) 260, 285
BseMI GCAATG 1 cut(s) 46
BseMII CTCAG 2 cut(s) 28, 149
BseYI CCCAGC 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 15
BsiHKCI CYCGRG 1 cut(s) 246
BsiSI CCGG 1 cut(s) 247
BsoBI CYCGRG 1 cut(s) 246
Bsp1286I GDGCHC 1 cut(s) 15
Bsp143I GATC 1 cut(s) 83
Bsp1720I GCTNAGC 1 cut(s) 14
BspCNI CTCAG 2 cut(s) 27, 150
BspPI GGATC 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 46
BssECI CCNNGG 1 cut(s) 246
BssMI GATC 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 291
BstDEI CTNAG 2 cut(s) 14, 158
BstF5I GGATG 2 cut(s) 260, 285
BstKTI GATC 1 cut(s) 86
BstMBI GATC 1 cut(s) 83
BstMWI GCNNNNNNNGC 2 cut(s) 43, 265
BstSCI CCNGG 2 cut(s) 245, 246
BtsCI GGATG 2 cut(s) 260, 285
BtsIMutI CAGTG 1 cut(s) 8
Cfr9I CCCGGG 1 cut(s) 246
Csp6I GTAC 1 cut(s) 241
CviJI RGCY 7 cut(s) 13, 18, 37, 73, 127, 139, 157
CviKI_1 RGCY 7 cut(s) 13, 18, 37, 73, 127, 139, 157
CviQI GTAC 1 cut(s) 241
DdeI CTNAG 2 cut(s) 14, 158
DpnI GATC 1 cut(s) 85
DpnII GATC 1 cut(s) 83
Ecl136II GAGCTC 1 cut(s) 13
Eco24I GRGCYC 1 cut(s) 15
Eco53kI GAGCTC 1 cut(s) 13
Eco88I CYCGRG 1 cut(s) 246
EcoICRI GAGCTC 1 cut(s) 13
EcoT38I GRGCYC 1 cut(s) 15
FaiI YATR 7 cut(s) 28, 147, 173, 218, 231, 233, 302
FauNDI CATATG 1 cut(s) 231
FokI GGATG 2 cut(s) 247, 292
FriOI GRGCYC 1 cut(s) 15
FspBI CTAG 1 cut(s) 34
GsaI CCCAGC 1 cut(s) 278
HapII CCGG 1 cut(s) 247
HinfI GANTC 2 cut(s) 30, 283
HpaII CCGG 1 cut(s) 247
HphI GGTGA 2 cut(s) 207, 265
Hpy166II GTNNAC 1 cut(s) 243
Hpy188I TCNGA 1 cut(s) 83
Hpy8I GTNNAC 1 cut(s) 243
HpyCH4III ACNGT 1 cut(s) 291
HpyCH4IV ACGT 1 cut(s) 107
HpyCH4V TGCA 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 2 cut(s) 43, 265
HpyF3I CTNAG 2 cut(s) 14, 158
HpySE526I ACGT 1 cut(s) 107
Kzo9I GATC 1 cut(s) 83
LmnI GCTCC 2 cut(s) 10, 70
LpnPI CCDG 3 cut(s) 77, 260, 260
LweI GCATC 1 cut(s) 246
MaeI CTAG 1 cut(s) 34
MaeII ACGT 1 cut(s) 107
MalI GATC 1 cut(s) 85
MboI GATC 1 cut(s) 83
MhlI GDGCHC 1 cut(s) 15
MnlI CCTC 3 cut(s) 153, 231, 274
MseI TTAA 1 cut(s) 110
MslI CAYNNNNRTG 1 cut(s) 248
MspI CCGG 1 cut(s) 247
MspR9I CCNGG 2 cut(s) 247, 248
MwoI GCNNNNNNNGC 2 cut(s) 43, 265
NciI CCSGG 2 cut(s) 247, 248
NdeI CATATG 1 cut(s) 231
NdeII GATC 1 cut(s) 83
OliI CACNNNNGTG 1 cut(s) 248
PfeI GAWTC 2 cut(s) 30, 283
Psp124BI GAGCTC 1 cut(s) 15
Psp1406I AACGTT 1 cut(s) 107
PspFI CCCAGC 1 cut(s) 274
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
RseI CAYNNNNRTG 1 cut(s) 248
SacI GAGCTC 1 cut(s) 15
SaqAI TTAA 1 cut(s) 110
Sau3AI GATC 1 cut(s) 83
ScrFI CCNGG 2 cut(s) 247, 248
SduI GDGCHC 1 cut(s) 15
SfaNI GCATC 1 cut(s) 246
SmaI CCCGGG 1 cut(s) 248
SmiMI CAYNNNNRTG 1 cut(s) 248
SspMI CTAG 1 cut(s) 34
SstI GAGCTC 1 cut(s) 15
StyD4I CCNGG 2 cut(s) 245, 246
TaaI ACNGT 1 cut(s) 291
TaiI ACGT 1 cut(s) 110
TfiI GAWTC 2 cut(s) 30, 283
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TspMI CCCGGG 1 cut(s) 246
XmaI CCCGGG 1 cut(s) 246
XspI CTAG 1 cut(s) 34
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.