Prupe.7G235200_v2.0.a1

Tudor domain-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Reverse (-)
20449158 .. 20452339
3182 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G235200.1

Sequence Viewer

Length: 1329 bp
ATGGAGGAGAGCTCCGGTGCTTCAGACGCTGCAATCGAAACCCTAAGGAGCAGGGGCTGGTGCTTCGGCGACCTGGACCAAGTGAAGGCGATGATCATGATCCACTCCGCTTTGGCCGACGACACGCGTACGGTGGTGAATTCAGTGGAATCGGAGCTCACCAACATGGACCTCAAATCCATCTCCGCCAAGTCCTTGCCCGACCCGAATACTCTCCGCAAATCATCTCATCTTCTCGGCCCTCAAGTCCTCCAGATAGCTTGGGTTAGAGACATTACCAGAAGCAGTGTGGTGGATTTTGCGAGAAATTCAAGCAGTCGGCGTCTTTTAAAGCTTGGCCTGACAGACGGCCACAGCGAGGTAGCAGCTGTAGAGTACTTTCATATCCCATCAATCCCTGACGACGTCGTTCCTGGTACAAAGGTCCGTTTGGAAGGTAGAGCTACTATACGTAATGGAATAGTATGTTTGAATCCTAAAGTTGTGACTTTGTTAGGAGGCGTTGTTCAGTCACTTTATGAAGAATGGCAGATGAATAAAAAATATTCAGGCTTTTCCCGCTCATCTTTAAGGGTTTCACAGGAAAGTGACGGTAACGGCCCCCCTCCATTTGAGAAGTTGCAAGTTGGGATACCCAAAAGTCGGTTTCCTCAGCAGGACAAGTCTTCTTATTACTCTGATGTGAACTCCAAGAGCAGTGGGCCTATTGCCAGAAACGTTGAGGTTAGGCCAATTGGAAGGCAGCAGGACCTTCATTTGAAATCAAACGACGTGGATAACTCTGATAAAAAGAATGACACAGATAACAAGCTTACGACAGATTCCCTTGATGAACAAACTCAAGATAAACCTAGTAGCTCTGCAGCGAGGCCAAAAGAAGTAATTGAAGCTGTCCCTGTTCAAAACCAAGCGGCTGCACAAAAACTCCTCCAGAAAATGAGTCATCAAAACCGGGATGACAGGCATTCAAGAGGTAGACAATATAGAGGAAAGGGGAGGCAAGAGGAAGAGCCCGTGGTGTTCACTTTGGATGAATGGGAAAAGAGGAAAGCTGGAGCAAAGCCTTCAATAAGAAATCCCTTTGCACAGAGCAGTCGCGACGAGGAACTTGCAAGGCAGCTCCAAAATCAATTTGATTTGGAAGATTATCATGTACAAAAAGGTCCTCCTCGTGATGTGAATGCAGAGAATATAAAAATGAGCATGTTTAACTTCCAAAGGGATGACGACGGTGGTCGTGGAATGGGACATGAAGGGAGGGGAAGAGGAAGAGGAAGGGGGCGGGGGAGGAGTAGAGGAGGGGGGAGGGGAAGAGGAGGATTTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

443

Amino Acids

49.23

Weight (kDa)

9.37

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011849)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 408
AccBSI CCGCTC 1 cut(s) 561
AccI GTMKAC 1 cut(s) 976
AccII CGCG 2 cut(s) 127, 1098
AciI CCGC 6 cut(s) 108, 186, 217, 559, 911, 1282
AclI AACGTT 1 cut(s) 717
AclWI GGATC 1 cut(s) 94
AcoI YGGCCR 2 cut(s) 114, 349
AcsI RAATTY 2 cut(s) 139, 307
AcuI CTGAAG 1 cut(s) 6
AcyI GRCGYC 2 cut(s) 322, 405
AfaI GTAC 4 cut(s) 130, 377, 418, 1155
AfiI CCNNNNNNNGG 3 cut(s) 85, 358, 642
AflIII ACRYGT 1 cut(s) 125
AgsI TTSAA 7 cut(s) 312, 472, 760, 887, 902, 969, 1068
AjiI CACGTC 1 cut(s) 772
AjnI CCWGG 2 cut(s) 72, 412
AloI GAACNNNNNNTCC 2 cut(s) 489, 521
Alw21I GWGCWC 2 cut(s) 14, 159
Alw26I GTCTC 1 cut(s) 264
AlwI GGATC 1 cut(s) 94
AlwNI CAGNNNCTG 2 cut(s) 29, 57
AoxI GGCC 8 cut(s) 114, 238, 337, 349, 598, 701, 728, 869
ApeKI GCWGC 6 cut(s) 29, 365, 742, 863, 914, 1117
ApoI RAATTY 2 cut(s) 139, 307
AspS9I GGNCC 8 cut(s) 76, 169, 239, 424, 599, 701, 748, 1163
AsuC2I CCSGG 1 cut(s) 953
AsuHPI GGTGA 2 cut(s) 148, 151
AvaII GGWCC 5 cut(s) 76, 169, 424, 748, 1163
AxyI CCTNAGG 1 cut(s) 44
BaeI ACNNNNGTAYC 2 cut(s) 408, 441
BanII GRGCYC 3 cut(s) 14, 159, 1014
BauI CACGAG 1 cut(s) 1170
BbsI GAAGAC 1 cut(s) 657
Bbv12I GWGCWC 2 cut(s) 14, 159
BbvCI CCTCAGC 1 cut(s) 651
BbvI GCAGC 6 cut(s) 16, 377, 754, 875, 901, 1129
BccI CCATC 2 cut(s) 188, 397
BceAI ACGGC 2 cut(s) 364, 613
BcgI CGANNNNNNTGC 2 cut(s) 1091, 1125
BciT130I CCWGG 2 cut(s) 74, 414
BciVI GTATCC 1 cut(s) 624
BclI TGATCA 1 cut(s) 93
BcnI CCSGG 1 cut(s) 953
BcoDI GTCTC 1 cut(s) 264
BfaI CTAG 1 cut(s) 852
BfmI CTRYAG 2 cut(s) 369, 861
BfuI GTATCC 1 cut(s) 624
BisI GCNGC 7 cut(s) 30, 366, 743, 864, 912, 915, 1118
BlsI GCNGC 7 cut(s) 31, 367, 744, 865, 913, 916, 1119
BmcAI AGTACT 1 cut(s) 377
Bme1390I CCNGG 3 cut(s) 74, 414, 953
Bme18I GGWCC 5 cut(s) 76, 169, 424, 748, 1163
BmgBI CACGTC 1 cut(s) 772
BmgT120I GGNCC 8 cut(s) 76, 169, 239, 424, 599, 701, 748, 1163
BmiI GGNNCC 1 cut(s) 601
BmrFI CCNGG 3 cut(s) 74, 414, 953
BoxI GACNNNNGTC 1 cut(s) 1233
BpiI GAAGAC 1 cut(s) 657
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 3 cut(s) 236, 914, 1074
Bpu10I CCTNAGC 1 cut(s) 651
BpuEI CTTGAG 2 cut(s) 228, 825
BpuMI CCSGG 1 cut(s) 953
BsaAI YACGTR 1 cut(s) 452
BsaBI GATNNNNATC 1 cut(s) 98
BsaHI GRCGYC 2 cut(s) 322, 405
BsaJI CCNNGG 1 cut(s) 1014
BsaWI WCCGGW 1 cut(s) 14
BsaXI ACNNNNNCTCC 4 cut(s) 489, 519, 909, 939
Bsc4I CCNNNNNNNGG 3 cut(s) 85, 358, 642
Bse21I CCTNAGG 1 cut(s) 44
Bse8I GATNNNNATC 1 cut(s) 98
BseBI CCWGG 2 cut(s) 74, 414
BseDI CCNNGG 1 cut(s) 1014
BseGI GGATG 3 cut(s) 961, 1036, 1228
BseJI GATNNNNATC 1 cut(s) 98
BseLI CCNNNNNNNGG 3 cut(s) 85, 358, 642
BseMII CTCAG 1 cut(s) 665
BseRI GAGGAG 6 cut(s) 20, 917, 1158, 1303, 1311, 1329
BseXI GCAGC 6 cut(s) 16, 377, 754, 875, 901, 1129
BsgI GTGCAG 1 cut(s) 900
Bsh1236I CGCG 2 cut(s) 127, 1098
BshFI GGCC 8 cut(s) 116, 240, 339, 351, 600, 703, 730, 871
BsiHKAI GWGCWC 2 cut(s) 14, 159
BsiSI CCGG 2 cut(s) 15, 952
BsiWI CGTACG 1 cut(s) 128
BslFI GGGAC 2 cut(s) 878, 1260
BslI CCNNNNNNNGG 3 cut(s) 85, 358, 642
BsmAI GTCTC 1 cut(s) 264
BsmFI GGGAC 2 cut(s) 878, 1260
BsmI GAATGC 2 cut(s) 964, 1186
BsnI GGCC 8 cut(s) 116, 240, 339, 351, 600, 703, 730, 871
Bsp1286I GDGCHC 3 cut(s) 14, 159, 1014
Bsp1407I TGTACA 1 cut(s) 1153
Bsp143I GATC 2 cut(s) 93, 99
Bsp68I TCGCGA 1 cut(s) 1098
BspACI CCGC 6 cut(s) 108, 186, 217, 559, 911, 1282
BspANI GGCC 8 cut(s) 116, 240, 339, 351, 600, 703, 730, 871
BspCNI CTCAG 1 cut(s) 664
BspFNI CGCG 2 cut(s) 127, 1098
BspHI TCATGA 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 601
BspMAI CTGCAG 1 cut(s) 865
BspPI GGATC 1 cut(s) 94
BspQI GCTCTTC 1 cut(s) 1002
BsrBI CCGCTC 1 cut(s) 561
BsrGI TGTACA 1 cut(s) 1153
BssECI CCNNGG 1 cut(s) 1014
BssMI GATC 2 cut(s) 93, 99
BssNI GRCGYC 2 cut(s) 322, 405
BssSI CACGAG 1 cut(s) 1170
Bst2BI CACGAG 1 cut(s) 1170
Bst2UI CCWGG 2 cut(s) 74, 414
Bst4CI ACNGT 3 cut(s) 133, 593, 1232
Bst6I CTCTTC 4 cut(s) 1002, 1258, 1264, 1306
BstACI GRCGYC 2 cut(s) 322, 405
BstAUI TGTACA 1 cut(s) 1153
BstBAI YACGTR 1 cut(s) 452
BstDEI CTNAG 2 cut(s) 44, 651
BstDSI CCRYGG 1 cut(s) 1014
BstF5I GGATG 3 cut(s) 961, 1036, 1228
BstFNI CGCG 2 cut(s) 127, 1098
BstKTI GATC 2 cut(s) 96, 102
BstMAI GTCTC 1 cut(s) 264
BstMBI GATC 2 cut(s) 93, 99
BstMWI GCNNNNNNNGC 2 cut(s) 26, 558
BstNI CCWGG 2 cut(s) 74, 414
BstNSI RCATGY 1 cut(s) 1207
BstPAI GACNNNNGTC 1 cut(s) 1233
BstSCI CCNGG 3 cut(s) 72, 412, 951
BstSFI CTRYAG 2 cut(s) 369, 861
BstSNI TACGTA 1 cut(s) 452
BstUI CGCG 2 cut(s) 127, 1098
BstV1I GCAGC 6 cut(s) 16, 377, 754, 875, 901, 1129
BstV2I GAAGAC 1 cut(s) 657
Bsu36I CCTNAGG 1 cut(s) 44
BsuI GTATCC 1 cut(s) 624
BsuRI GGCC 8 cut(s) 116, 240, 339, 351, 600, 703, 730, 871
BtgI CCRYGG 1 cut(s) 1014
BtgZI GCGATG 1 cut(s) 104
BtrI CACGTC 1 cut(s) 772
BtsCI GGATG 3 cut(s) 961, 1036, 1228
BtsI GCAGTG 2 cut(s) 292, 703
BtsIMutI CAGTG 3 cut(s) 150, 292, 703
BtuMI TCGCGA 1 cut(s) 1098
CaiI CAGNNNCTG 2 cut(s) 29, 57
CciI TCATGA 1 cut(s) 96
Cfr13I GGNCC 8 cut(s) 76, 169, 239, 424, 599, 701, 748, 1163
CseI GACGC 2 cut(s) 35, 311
Csp6I GTAC 4 cut(s) 129, 376, 417, 1154
CspCI CAANNNNNGTGG 4 cut(s) 679, 714, 753, 788
CviAII CATG 5 cut(s) 97, 166, 1151, 1204, 1250
CviQI GTAC 4 cut(s) 129, 376, 417, 1154
DdeI CTNAG 2 cut(s) 44, 651
DpnI GATC 2 cut(s) 95, 101
DpnII GATC 2 cut(s) 93, 99
DraI TTTAAA 1 cut(s) 330
EaeI YGGCCR 2 cut(s) 114, 349
Eam1104I CTCTTC 4 cut(s) 1002, 1258, 1264, 1306
EarI CTCTTC 4 cut(s) 1002, 1258, 1264, 1306
EciI GGCGGA 1 cut(s) 175
Ecl136II GAGCTC 2 cut(s) 12, 157
Eco105I TACGTA 1 cut(s) 452
Eco24I GRGCYC 3 cut(s) 14, 159, 1014
Eco47I GGWCC 5 cut(s) 76, 169, 424, 748, 1163
Eco53kI GAGCTC 2 cut(s) 12, 157
Eco57I CTGAAG 1 cut(s) 6
Eco81I CCTNAGG 1 cut(s) 44
EcoICRI GAGCTC 2 cut(s) 12, 157
EcoO109I RGGNCCY 2 cut(s) 748, 1163
EcoRI GAATTC 1 cut(s) 139
EcoRII CCWGG 2 cut(s) 72, 412
EcoT38I GRGCYC 3 cut(s) 14, 159, 1014
FaeI CATG 5 cut(s) 100, 169, 1154, 1207, 1253
FaqI GGGAC 2 cut(s) 878, 1260
FatI CATG 5 cut(s) 96, 165, 1150, 1203, 1249
FauI CCCGC 2 cut(s) 566, 1275
FbaI TGATCA 1 cut(s) 93
FblI GTMKAC 1 cut(s) 976
Fnu4HI GCNGC 7 cut(s) 30, 366, 743, 864, 912, 915, 1118
FokI GGATG 3 cut(s) 968, 1043, 1235
FriOI GRGCYC 3 cut(s) 14, 159, 1014
Fsp4HI GCNGC 7 cut(s) 30, 366, 743, 864, 912, 915, 1118
FspBI CTAG 1 cut(s) 852
GluI GCNGC 7 cut(s) 30, 366, 743, 864, 912, 915, 1118
GsuI CTGGAG 3 cut(s) 236, 914, 1074
HaeIII GGCC 8 cut(s) 116, 240, 339, 351, 600, 703, 730, 871
HapII CCGG 2 cut(s) 15, 952
HgaI GACGC 2 cut(s) 35, 311
Hin1I GRCGYC 2 cut(s) 322, 405
Hin1II CATG 5 cut(s) 100, 169, 1154, 1207, 1253
HindIII AAGCTT 2 cut(s) 332, 809
HinfI GANTC 4 cut(s) 149, 472, 821, 940
HpaII CCGG 2 cut(s) 15, 952
HphI GGTGA 2 cut(s) 148, 151
Hpy166II GTNNAC 3 cut(s) 685, 977, 1023
Hpy188I TCNGA 4 cut(s) 25, 154, 679, 784
Hpy188III TCNNGA 7 cut(s) 97, 253, 842, 931, 969, 1097, 1172
Hpy8I GTNNAC 3 cut(s) 685, 977, 1023
Hpy99I CGWCG 6 cut(s) 122, 407, 410, 773, 1103, 1232
HpyAV CCTTC 7 cut(s) 79, 428, 732, 761, 1074, 1247, 1269
HpyCH4III ACNGT 3 cut(s) 133, 593, 1232
HpyCH4IV ACGT 4 cut(s) 405, 451, 717, 771
HpyCH4V TGCA 7 cut(s) 32, 622, 863, 917, 1085, 1112, 1184
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 558
HpyF3I CTNAG 2 cut(s) 44, 651
HpySE526I ACGT 4 cut(s) 405, 451, 717, 771
Hsp92I GRCGYC 2 cut(s) 322, 405
Hsp92II CATG 5 cut(s) 100, 169, 1154, 1207, 1253
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 2 cut(s) 93, 99
LguI GCTCTTC 1 cut(s) 1002
LmnI GCTCC 5 cut(s) 17, 48, 154, 1055, 1125
Lsp1109I GCAGC 6 cut(s) 16, 377, 754, 875, 901, 1129
MaeI CTAG 1 cut(s) 852
MaeII ACGT 4 cut(s) 405, 451, 717, 771
MaeIII GTNAC 4 cut(s) 484, 510, 587, 593
MalI GATC 2 cut(s) 95, 101
MbiI CCGCTC 1 cut(s) 561
MboI GATC 2 cut(s) 93, 99
MboII GAAGA 8 cut(s) 224, 533, 657, 1019, 1154, 1275, 1281, 1323
MfeI CAATTG 1 cut(s) 732
MhlI GDGCHC 3 cut(s) 14, 159, 1014
MluCI AATT 5 cut(s) 139, 307, 732, 882, 1130
MluI ACGCGT 1 cut(s) 125
MlyI GAGTC 1 cut(s) 949
MseI TTAA 3 cut(s) 329, 569, 1209
MslI CAYNNNNRTG 1 cut(s) 164
MspA1I CMGCKG 1 cut(s) 368
MspI CCGG 2 cut(s) 15, 952
MspR9I CCNGG 3 cut(s) 74, 414, 953
MunI CAATTG 1 cut(s) 732
Mva1269I GAATGC 2 cut(s) 964, 1186
MvaI CCWGG 2 cut(s) 74, 414
MvnI CGCG 2 cut(s) 127, 1098
MwoI GCNNNNNNNGC 2 cut(s) 26, 558
NciI CCSGG 1 cut(s) 953
NdeII GATC 2 cut(s) 93, 99
NlaIII CATG 5 cut(s) 100, 169, 1154, 1207, 1253
NlaIV GGNNCC 1 cut(s) 601
NmeAIII GCCGAG 1 cut(s) 216
NmuCI GTSAC 3 cut(s) 484, 510, 587
NruI TCGCGA 1 cut(s) 1098
NspI RCATGY 1 cut(s) 1207
PagI TCATGA 1 cut(s) 96
PciSI GCTCTTC 1 cut(s) 1002
PcsI WCGNNNNNNNCGW 2 cut(s) 33, 354
PctI GAATGC 2 cut(s) 964, 1186
PfeI GAWTC 3 cut(s) 149, 472, 821
Pfl23II CGTACG 1 cut(s) 128
PflFI GACNNNGTC 1 cut(s) 404
PkrI GCNGC 7 cut(s) 31, 367, 744, 865, 913, 916, 1119
PleI GAGTC 1 cut(s) 948
PpsI GAGTC 1 cut(s) 948
Ppu21I YACGTR 1 cut(s) 452
PpuMI RGGWCCY 2 cut(s) 748, 1163
PshAI GACNNNNGTC 1 cut(s) 1233
Psp124BI GAGCTC 2 cut(s) 14, 159
Psp1406I AACGTT 1 cut(s) 717
Psp5II RGGWCCY 2 cut(s) 748, 1163
Psp6I CCWGG 2 cut(s) 72, 412
PspGI CCWGG 2 cut(s) 72, 412
PspLI CGTACG 1 cut(s) 128
PspN4I GGNNCC 1 cut(s) 601
PspPI GGNCC 8 cut(s) 76, 169, 239, 424, 599, 701, 748, 1163
PspPPI RGGWCCY 2 cut(s) 748, 1163
PstI CTGCAG 1 cut(s) 865
PstNI CAGNNNCTG 2 cut(s) 29, 57
PsyI GACNNNGTC 1 cut(s) 404
PvuII CAGCTG 1 cut(s) 368
RruI TCGCGA 1 cut(s) 1098
RsaI GTAC 4 cut(s) 130, 377, 418, 1155
RsaNI GTAC 4 cut(s) 129, 376, 417, 1154
RseI CAYNNNNRTG 1 cut(s) 164
SacI GAGCTC 2 cut(s) 14, 159
SapI GCTCTTC 1 cut(s) 1002
SaqAI TTAA 3 cut(s) 329, 569, 1209
SatI GCNGC 7 cut(s) 30, 366, 743, 864, 912, 915, 1118
Sau3AI GATC 2 cut(s) 93, 99
Sau96I GGNCC 8 cut(s) 76, 169, 239, 424, 599, 701, 748, 1163
ScaI AGTACT 1 cut(s) 377
SchI GAGTC 1 cut(s) 949
ScrFI CCNGG 3 cut(s) 74, 414, 953
SduI GDGCHC 3 cut(s) 14, 159, 1014
SfcI CTRYAG 2 cut(s) 369, 861
SinI GGWCC 5 cut(s) 76, 169, 424, 748, 1163
SmiMI CAYNNNNRTG 1 cut(s) 164
SmlI CTYRAG 2 cut(s) 243, 840
SmoI CTYRAG 2 cut(s) 243, 840
SnaBI TACGTA 1 cut(s) 452
Sse9I AATT 5 cut(s) 139, 307, 732, 882, 1130
SsiI CCGC 6 cut(s) 108, 186, 217, 559, 911, 1282
SspI AATATT 1 cut(s) 545
SspMI CTAG 1 cut(s) 852
SstI GAGCTC 2 cut(s) 14, 159
StyD4I CCNGG 3 cut(s) 72, 412, 951
TaaI ACNGT 3 cut(s) 133, 593, 1232
TaiI ACGT 4 cut(s) 408, 454, 720, 774
TaqI TCGA 1 cut(s) 36
TasI AATT 5 cut(s) 139, 307, 732, 882, 1130
TatI WGTACW 2 cut(s) 375, 1153
TauI GCSGC 1 cut(s) 914
TfiI GAWTC 3 cut(s) 149, 472, 821
Tru1I TTAA 3 cut(s) 329, 569, 1209
Tru9I TTAA 3 cut(s) 329, 569, 1209
TscAI CASTG 3 cut(s) 150, 292, 703
TseFI GTSAC 3 cut(s) 484, 510, 587
TseI GCWGC 6 cut(s) 29, 365, 742, 863, 914, 1117
Tsp45I GTSAC 3 cut(s) 484, 510, 587
TspDTI ATGAA 7 cut(s) 371, 534, 548, 743, 846, 1047, 1266
TspGWI ACGGA 1 cut(s) 416
TspRI CASTG 3 cut(s) 150, 292, 703
Tth111I GACNNNGTC 1 cut(s) 404
VpaK11BI GGWCC 5 cut(s) 76, 169, 424, 748, 1163
XapI RAATTY 2 cut(s) 139, 307
XceI RCATGY 1 cut(s) 1207
XcmI CCANNNNNNNNNTGG 1 cut(s) 286
XmiI GTMKAC 1 cut(s) 976
XspI CTAG 1 cut(s) 852
ZraI GACGTC 1 cut(s) 406
ZrmI AGTACT 1 cut(s) 377
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.