Rh2CG049100

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0011849
Physical Location & Seq
Forward (+)
3900042 .. 3902931
2890 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG049100.1

Sequence Viewer

Length: 1275 bp
ATGGAGGAAAGCTCCGGCGCTCTCTCCGACGCCGCAATCGAAACCCTAAGAAGCCGAGGATGGTGCTTCGGCGGCGACTTGGAGCAAGTCCAAGCGATGATCCTGATCCACTCCGCCTTGGCCGACGACACCCGGACGGTGGTGAACTCAGTCGAATCGGAGCTGCTCAACATGGATCTCAAATCCGTCGGAGCCAAGTCGTTGCCCGACCCGGCCACTCTTCGCAAGTCATCTCATCTTGTCGGTCCCAAAGTTCTCCAGATAGCTTGGGTTAGAGACATTACGAGTAGTAATGTTGACGATTTTGCGAGGAATTCTAGTCGGCGGCTTTTGAAACTTGGTCTCAGTGATGGACATGGTGAGGTAGCAGCTATAGAGTACTTGCATATCCCTTCATTCTCCGACGACGTCGTTCCGGGAAGTAAGGTCCGCCTGGAAAATAAAGCTATTATACGAAATGGGATAGTATGTTTGACTCCTAAAGTCTTGACCGTGTTAGGAGGTGTTGTTCAGTCCCTTTATGAAGAATGGCAGATGAATAAAAAATATTCAGGTTTTTCGCGTTCAACTTTAAGGCTTTCAAAGGAAAGCGATGGTAATGGCCCTCCTCCATTTGAGAAGTTGCAAGTTGGGGCACCCAAAACTCAGTTTCCTCGGCAGGACAAGTCTTATCAGTCTGATGTTAACACTAAGAGCAGCGATCCTACTATCAGATCTTCTGAGATAAGACCATCTGGAAAGCAACAGCAGATCCTTCTTTCAAAGTCAAATGGTATTGATAACCCTAATAAGAAAAATGACTTGGATGTCAATCTAAAGACGGATTCTGTTAATGAAAGAACTGAAGAGAAACCTAGTAGCTCTGCAACAAGGCCAAAAGAAGTTGTTGAAGCTGTCCCTGTTCAAAACCAAGCAGCAGCACAGAAACTCCTCCAGAAAATGAGTCATCAAAACCAGGATAGTAGGCATTCAAGAGGTAGAAAATTTAGAGGCAAGGGTAGGGAGGAAGAGTCGGAGGTATTCACTTTGGAAGAATGGGAAAAGAGGAAAGCTGGGGCAAAGCCTTCCATAACCGCCACTTCTGCAGTTGTTCATCGTGATGAGGAACTTGCTTGGCAGCTTCAAAATCAGTTTGATTTAGAAGATTCTCATGCACAAATGGGTCCTCAAAATGTGGAGGCAGAGGATATTAAATTGAGCATGTTTAAGGATGATGATGGTGGGGGTTATGGAATGGAACACGGAAGGAACGGAAGGGGGAGTAGAGGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

424

Amino Acids

46.84

Weight (kDa)

6.79

Isoelectric Point (pI)

48.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RMI1_N_C PF08585 103 - 179 1.7e-17 RMI1, N-terminal OB-fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011849)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19950 AT5G19950 AT5G19950
fragaria_vesca FvH4_1g04220
malus_domestica MD00G1026600.v1.1 MD02G1038900.v1.1 MD02G1061400.v1.1
prunus_persica Prupe.7G235200_v2.0.a1
pyrus_communis pycom15g16270
rosa_chinensis RchiOBHm_Chr2g0089761
rosa_laevigata RLG00000016053
rosa_multiflora Rmu_sc0000665.1_g000010
rosa_roxburghii Rroxscaffold_2G00151640
rosa_rugosa Rorug02G0003000
rosa_samantha Rh2AG048200 Rh2BG047000 Rh2CG049100 Rh2DG048500
rosa_wichuraiana Rw2G004220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 806
AatII GACGTC 1 cut(s) 411
AccB1I GGYRCC 1 cut(s) 634
AccII CGCG 1 cut(s) 562
AciI CCGC 6 cut(s) 33, 72, 114, 325, 430, 1074
AclWI GGATC 5 cut(s) 94, 100, 183, 695, 745
AcoI YGGCCR 2 cut(s) 120, 213
AcsI RAATTY 2 cut(s) 313, 983
AcuI CTGAAG 1 cut(s) 864
AcyI GRCGYC 2 cut(s) 30, 408
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 8 cut(s) 334, 567, 582, 762, 890, 905, 972, 1124
AjnI CCWGG 2 cut(s) 432, 954
AjuI GAANNNNNNNTTGG 2 cut(s) 785, 817
AloI GAACNNNNNNTCC 2 cut(s) 492, 524
AluBI AGCT 9 cut(s) 12, 163, 266, 371, 446, 861, 893, 1052, 1120
AluI AGCT 9 cut(s) 12, 163, 266, 371, 446, 861, 893, 1052, 1120
Alw26I GTCTC 2 cut(s) 270, 347
AlwI GGATC 5 cut(s) 94, 100, 183, 695, 745
AoxI GGCC 4 cut(s) 120, 213, 601, 872
ApeKI GCWGC 6 cut(s) 163, 368, 696, 914, 917, 1117
ApoI RAATTY 2 cut(s) 313, 983
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 4 cut(s) 245, 427, 602, 1163
AsuC2I CCSGG 3 cut(s) 133, 212, 417
AsuHPI GGTGA 2 cut(s) 154, 371
AvaII GGWCC 3 cut(s) 245, 427, 1163
BaeGI GKGCMC 1 cut(s) 637
BanI GGYRCC 1 cut(s) 634
BbvI GCAGC 6 cut(s) 150, 380, 708, 926, 929, 1129
BccI CCATC 5 cut(s) 54, 344, 587, 739, 1211
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BciT130I CCWGG 2 cut(s) 434, 956
BcnI CCSGG 3 cut(s) 133, 212, 417
BcoDI GTCTC 2 cut(s) 270, 347
BfaI CTAG 2 cut(s) 318, 855
BfmI CTRYAG 2 cut(s) 372, 1083
BfoI RGCGCY 1 cut(s) 21
BglII AGATCT 1 cut(s) 713
BisI GCNGC 9 cut(s) 33, 73, 164, 326, 369, 697, 915, 918, 1118
BlsI GCNGC 9 cut(s) 34, 74, 165, 327, 370, 698, 916, 919, 1119
BmcAI AGTACT 1 cut(s) 380
Bme1390I CCNGG 5 cut(s) 133, 212, 417, 434, 956
Bme18I GGWCC 3 cut(s) 245, 427, 1163
BmgT120I GGNCC 4 cut(s) 245, 427, 602, 1163
BmiI GGNNCC 4 cut(s) 193, 247, 636, 1164
BmrFI CCNGG 5 cut(s) 133, 212, 417, 434, 956
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 2 cut(s) 242, 917
BpuMI CCSGG 3 cut(s) 133, 212, 417
BsaBI GATNNNNATC 2 cut(s) 104, 810
BsaHI GRCGYC 2 cut(s) 30, 408
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 3 cut(s) 55, 117, 653
BsaXI ACNNNNNCTCC 6 cut(s) 492, 522, 912, 942, 995, 1025
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse8I GATNNNNATC 2 cut(s) 104, 810
BseBI CCWGG 2 cut(s) 434, 956
BseDI CCNNGG 3 cut(s) 55, 117, 653
BseGI GGATG 3 cut(s) 65, 811, 1216
BseJI GATNNNNATC 2 cut(s) 104, 810
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 4 cut(s) 162, 358, 659, 711
BseRI GAGGAG 2 cut(s) 597, 920
BseSI GKGCMC 1 cut(s) 637
BseXI GCAGC 6 cut(s) 150, 380, 708, 926, 929, 1129
BseYI CCCAGC 1 cut(s) 1052
Bsh1236I CGCG 1 cut(s) 562
BshFI GGCC 4 cut(s) 122, 215, 603, 874
BshNI GGYRCC 1 cut(s) 634
BsiSI CCGG 4 cut(s) 15, 133, 212, 416
BslFI GGGAC 3 cut(s) 231, 499, 881
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 270, 347
BsmFI GGGAC 3 cut(s) 231, 499, 881
BsmI GAATGC 1 cut(s) 967
BsnI GGCC 4 cut(s) 122, 215, 603, 874
Bso31I GGTCTC 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 637
Bsp143I GATC 6 cut(s) 99, 105, 175, 700, 713, 750
BspACI CCGC 6 cut(s) 33, 72, 114, 325, 430, 1074
BspANI GGCC 4 cut(s) 122, 215, 603, 874
BspCNI CTCAG 4 cut(s) 161, 357, 658, 712
BspFNI CGCG 1 cut(s) 562
BspLI GGNNCC 4 cut(s) 193, 247, 636, 1164
BspMAI CTGCAG 1 cut(s) 1087
BspPI GGATC 5 cut(s) 94, 100, 183, 695, 745
BspT107I GGYRCC 1 cut(s) 634
BspTNI GGTCTC 1 cut(s) 347
BssECI CCNNGG 3 cut(s) 55, 117, 653
BssMI GATC 6 cut(s) 99, 105, 175, 700, 713, 750
BssNI GRCGYC 2 cut(s) 30, 408
BssT1I CCWWGG 1 cut(s) 117
Bst2UI CCWGG 2 cut(s) 434, 956
Bst4CI ACNGT 2 cut(s) 139, 493
Bst6I CTCTTC 3 cut(s) 225, 840, 1002
BstACI GRCGYC 2 cut(s) 30, 408
BstDEI CTNAG 6 cut(s) 47, 148, 344, 645, 690, 720
BstF5I GGATG 3 cut(s) 65, 811, 1216
BstFNI CGCG 1 cut(s) 562
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 6 cut(s) 102, 108, 178, 703, 716, 753
BstMAI GTCTC 2 cut(s) 270, 347
BstMBI GATC 6 cut(s) 99, 105, 175, 700, 713, 750
BstMWI GCNNNNNNNGC 2 cut(s) 72, 1082
BstNI CCWGG 2 cut(s) 434, 956
BstNSI RCATGY 1 cut(s) 1204
BstSCI CCNGG 5 cut(s) 131, 210, 415, 432, 954
BstSFI CTRYAG 2 cut(s) 372, 1083
BstSLI GKGCMC 1 cut(s) 637
BstUI CGCG 1 cut(s) 562
BstV1I GCAGC 6 cut(s) 150, 380, 708, 926, 929, 1129
BstX2I RGATCY 3 cut(s) 175, 713, 750
BstYI RGATCY 3 cut(s) 175, 713, 750
BsuRI GGCC 4 cut(s) 122, 215, 603, 874
BtgZI GCGATG 2 cut(s) 110, 606
BtsCI GGATG 3 cut(s) 65, 811, 1216
BtsIMutI CAGTG 1 cut(s) 352
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 4 cut(s) 245, 427, 602, 1163
CseI GACGC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 379
CviAII CATG 4 cut(s) 172, 356, 1151, 1201
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 6 cut(s) 47, 148, 344, 645, 690, 720
DpnI GATC 6 cut(s) 101, 107, 177, 702, 715, 752
DpnII GATC 6 cut(s) 99, 105, 175, 700, 713, 750
DrdI GACNNNNNNGTC 1 cut(s) 806
DseDI GACNNNNNNGTC 1 cut(s) 806
EaeI YGGCCR 2 cut(s) 120, 213
Eam1104I CTCTTC 3 cut(s) 225, 840, 1002
EarI CTCTTC 3 cut(s) 225, 840, 1002
EciI GGCGGA 2 cut(s) 103, 419
Eco130I CCWWGG 1 cut(s) 117
Eco31I GGTCTC 1 cut(s) 347
Eco47I GGWCC 3 cut(s) 245, 427, 1163
Eco57I CTGAAG 1 cut(s) 864
EcoO109I RGGNCCY 1 cut(s) 1163
EcoRI GAATTC 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 432, 954
EcoT14I CCWWGG 1 cut(s) 117
ErhI CCWWGG 1 cut(s) 117
FaeI CATG 4 cut(s) 175, 359, 1154, 1204
FaqI GGGAC 3 cut(s) 231, 499, 881
FatI CATG 4 cut(s) 171, 355, 1150, 1200
Fnu4HI GCNGC 9 cut(s) 33, 73, 164, 326, 369, 697, 915, 918, 1118
FokI GGATG 3 cut(s) 72, 818, 1223
Fsp4HI GCNGC 9 cut(s) 33, 73, 164, 326, 369, 697, 915, 918, 1118
FspBI CTAG 2 cut(s) 318, 855
GlaI GCGC 1 cut(s) 19
GluI GCNGC 9 cut(s) 33, 73, 164, 326, 369, 697, 915, 918, 1118
GsaI CCCAGC 1 cut(s) 1056
GsuI CTGGAG 2 cut(s) 242, 917
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 4 cut(s) 122, 215, 603, 874
HapII CCGG 4 cut(s) 15, 133, 212, 416
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 2 cut(s) 30, 408
Hin1II CATG 4 cut(s) 175, 359, 1154, 1204
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HincII GTYRAC 2 cut(s) 298, 685
HindII GTYRAC 2 cut(s) 298, 685
HinfI GANTC 6 cut(s) 155, 475, 824, 943, 1010, 1145
HpaI GTTAAC 1 cut(s) 685
HpaII CCGG 4 cut(s) 15, 133, 212, 416
HphI GGTGA 2 cut(s) 154, 371
Hpy166II GTNNAC 3 cut(s) 145, 298, 685
Hpy188I TCNGA 8 cut(s) 28, 160, 191, 403, 679, 713, 721, 1015
Hpy188III TCNNGA 7 cut(s) 103, 259, 487, 735, 934, 972, 1097
Hpy8I GTNNAC 3 cut(s) 145, 298, 685
Hpy99I CGWCG 6 cut(s) 32, 128, 191, 407, 410, 413
HpyAV CCTTC 5 cut(s) 402, 764, 1074, 1239, 1248
HpyCH4III ACNGT 2 cut(s) 139, 493
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 5 cut(s) 385, 625, 866, 1085, 1154
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 1082
HpyF3I CTNAG 6 cut(s) 47, 148, 344, 645, 690, 720
HpySE526I ACGT 1 cut(s) 408
Hsp92I GRCGYC 2 cut(s) 30, 408
Hsp92II CATG 4 cut(s) 175, 359, 1154, 1204
HspAI GCGC 1 cut(s) 18
KspAI GTTAAC 1 cut(s) 685
Kzo9I GATC 6 cut(s) 99, 105, 175, 700, 713, 750
LmnI GCTCC 4 cut(s) 17, 82, 160, 191
Lsp1109I GCAGC 6 cut(s) 150, 380, 708, 926, 929, 1129
MaeI CTAG 2 cut(s) 318, 855
MaeII ACGT 1 cut(s) 408
MalI GATC 6 cut(s) 101, 107, 177, 702, 715, 752
MboI GATC 6 cut(s) 99, 105, 175, 700, 713, 750
MboII GAAGA 7 cut(s) 212, 536, 708, 857, 1019, 1043, 1154
MflI RGATCY 3 cut(s) 175, 713, 750
MhlI GDGCHC 1 cut(s) 637
MluCI AATT 3 cut(s) 313, 983, 1193
MlyI GAGTC 3 cut(s) 469, 952, 1019
MmeI TCCRAC 4 cut(s) 51, 169, 426, 993
MseI TTAA 5 cut(s) 572, 684, 831, 1191, 1206
MslI CAYNNNNRTG 1 cut(s) 1098
MspI CCGG 4 cut(s) 15, 133, 212, 416
MspR9I CCNGG 5 cut(s) 133, 212, 417, 434, 956
Mva1269I GAATGC 1 cut(s) 967
MvaI CCWGG 2 cut(s) 434, 956
MvnI CGCG 1 cut(s) 562
MwoI GCNNNNNNNGC 2 cut(s) 72, 1082
NciI CCSGG 3 cut(s) 133, 212, 417
NdeII GATC 6 cut(s) 99, 105, 175, 700, 713, 750
NlaIII CATG 4 cut(s) 175, 359, 1154, 1204
NlaIV GGNNCC 4 cut(s) 193, 247, 636, 1164
NmeAIII GCCGAG 2 cut(s) 80, 634
NspI RCATGY 1 cut(s) 1204
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PctI GAATGC 1 cut(s) 967
PfeI GAWTC 3 cut(s) 155, 824, 1145
PflFI GACNNNGTC 1 cut(s) 407
PfoI TCCNGGA 1 cut(s) 415
PkrI GCNGC 9 cut(s) 34, 74, 165, 327, 370, 698, 916, 919, 1119
PleI GAGTC 3 cut(s) 469, 951, 1018
PpsI GAGTC 3 cut(s) 469, 951, 1018
PpuMI RGGWCCY 1 cut(s) 1163
Psp5II RGGWCCY 1 cut(s) 1163
Psp6I CCWGG 2 cut(s) 432, 954
PspFI CCCAGC 1 cut(s) 1052
PspGI CCWGG 2 cut(s) 432, 954
PspN4I GGNNCC 4 cut(s) 193, 247, 636, 1164
PspPI GGNCC 4 cut(s) 245, 427, 602, 1163
PspPPI RGGWCCY 1 cut(s) 1163
PstI CTGCAG 1 cut(s) 1087
PsuI RGATCY 3 cut(s) 175, 713, 750
PsyI GACNNNGTC 1 cut(s) 407
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
RseI CAYNNNNRTG 1 cut(s) 1098
SaqAI TTAA 5 cut(s) 572, 684, 831, 1191, 1206
SatI GCNGC 9 cut(s) 33, 73, 164, 326, 369, 697, 915, 918, 1118
Sau3AI GATC 6 cut(s) 99, 105, 175, 700, 713, 750
Sau96I GGNCC 4 cut(s) 245, 427, 602, 1163
ScaI AGTACT 1 cut(s) 380
SchI GAGTC 3 cut(s) 469, 952, 1019
ScrFI CCNGG 5 cut(s) 133, 212, 417, 434, 956
SduI GDGCHC 1 cut(s) 637
SfcI CTRYAG 2 cut(s) 372, 1083
SinI GGWCC 3 cut(s) 245, 427, 1163
SmiMI CAYNNNNRTG 1 cut(s) 1098
Sse9I AATT 3 cut(s) 313, 983, 1193
SsiI CCGC 6 cut(s) 33, 72, 114, 325, 430, 1074
SspI AATATT 1 cut(s) 548
SspMI CTAG 2 cut(s) 318, 855
StyD4I CCNGG 5 cut(s) 131, 210, 415, 432, 954
StyI CCWWGG 1 cut(s) 117
TaaI ACNGT 2 cut(s) 139, 493
TaiI ACGT 1 cut(s) 411
TaqI TCGA 2 cut(s) 39, 153
TaqII GACCGA 1 cut(s) 233
TasI AATT 3 cut(s) 313, 983, 1193
TatI WGTACW 1 cut(s) 378
TauI GCSGC 3 cut(s) 35, 75, 328
TfiI GAWTC 3 cut(s) 155, 824, 1145
Tru1I TTAA 5 cut(s) 572, 684, 831, 1191, 1206
Tru9I TTAA 5 cut(s) 572, 684, 831, 1191, 1206
TscAI CASTG 1 cut(s) 352
TseI GCWGC 6 cut(s) 163, 368, 696, 914, 917, 1117
TspDTI ATGAA 5 cut(s) 384, 537, 551, 849, 1082
TspGWI ACGGA 4 cut(s) 175, 836, 1257, 1266
TspRI CASTG 1 cut(s) 352
Tth111I GACNNNGTC 1 cut(s) 407
VpaK11BI GGWCC 3 cut(s) 245, 427, 1163
XapI RAATTY 2 cut(s) 313, 983
XceI RCATGY 1 cut(s) 1204
XspI CTAG 2 cut(s) 318, 855
ZraI GACGTC 1 cut(s) 409
ZrmI AGTACT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.