Rh2AG048200

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0011849
Physical Location & Seq
Forward (+)
3803015 .. 3805775
2761 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG048200.1

Sequence Viewer

Length: 1650 bp
ATGGAGGAAAGCTCCGGCGCTCTCTCCGACGCCGCAATCGAAACCCTAAGAAACCGAGGATGGTGCTTCGGCGGCGAATTGGAGCAAGTCCAAGCGATGATCCTGATCCACTCCGCTTTGGCCGACGACACCCGCACGGTGGTGAACTCAGTGGAATCGGAGCTTCTCAACATGGATCTCAAATCCATCGGAGCCAAGTCGTTGCCCGACCCGGCCACTCTTCGCAAGTCATCTCATCTTGTCGGTCCCAAAGTTCTCCAGATAGCTTGGGTTAGAGACATTACGAGTAGTAATGTTGACGATTTTGCGAGGAATTCTAGTCGGCGGCTTTTGAAACTTGGTCTCAGTGATGGACATGGTGAGGTAGCAGCTATAGAGTACTTGCATATCCCTTCATTCTCCGACGACGTCGTTCCGGGCACTAAGGTCCGCCTGGAAAATAAAGCTATTATACGAAATGGGATAGTATGTTTGACTCCTAAAGTCTTGACCGTGTTAGGAGGTGTTGTTCAGTCCCTTTATGAAGAATGGCAGATGAATAAAAAATATTCAGGTTTTTCGCGTTCAACTTTAAGGCTTTCAAAGGAAAGCGATGGTAATGGCCCTCCTCCATTTGAGAAGTTGCAAGTTGGGGCACCCAAAACTCAGTTTCCTCGGCAGGCCAAGTCTTATCAGTCTGATGTTAACACTAAGAGCAGCAATCCTACTATCAGATCTTCTGAGATAAGACCATCTGGAAAGCAACAGCAGATCCTTCTTTCAAAGTCAAATGGTATTGATAACCCAAATAAGAAAAATGACTTGGATGTCAATCTAAAGACGGATTCTGTTAATGAAAGAACTGAAGAGAAACCTAGTAGCTCTGCAACAAGGCCAAAAGAAGTTGTTGAAGCTGTCCCTGTTCAAAACCAAGCAGCAGCACAGAAACTCCTCCAGAAAATGAGTCATCAAAACCAGGATAGTAGGCATTCAAGAGGTAGAAAATTTAGAGGCAAGGATAGGGAGGAAGAGTCGGAGGTATTCACTTTGGAAGAATGGGAAAAGAGGAAAGCTGGGGCAAAGCCTTCCATAACCGCCACTTCTGCAGTTGTTCATCGTGATGAGGAACTTGCTTGGCAGCTTCAAAATCAGTTTGATTTAGAAGATTCTCATGCACAAATGGGTCCTCAAAATGTGGAGGCAGAGGATATTAAATTGAGCATGTTTAAGTATGAGAAGAATGACGACTGGGGTAGTGGAATGGGAAATGAGAGGAGAGGGAGAGGGAGAGGGAGAGGAAGAGGAAGAGGGAAAGGGAAAGGGAGAGGAAGGGGAAGAGGATGGGAAGATGAAGACAGGGGTTACGAAATGGAACATGAAAGGAGTGGAAGAGGAAGGGAAGATGACGACGGTGGTTATGGATCGGAACATGGAAGGAGCGGAAGAGGGAGAGGATGGGGAAGAAGGGATGATGGTGGTGGTGGTTATGGAATGGAACACGGAAGGAGTGGAAGTGGGAGAGGATGGGGAAGAAGGGATGATGGTGGTGGTGGTTATGGAATGGAACACGGAAGGAGCGGAAGTGGGAGAGGATGGGGAAGAAGGGATGATGGTGGTGAGGGTTATGGAATGGACCACGGAAGGAGCGGAAGTGGGAGTAGAGGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

549

Amino Acids

60.43

Weight (kDa)

9.09

Isoelectric Point (pI)

43.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RMI1_N_C PF08585 103 - 179 1.4e-17 RMI1, N-terminal OB-fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011849)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19950 AT5G19950 AT5G19950
fragaria_vesca FvH4_1g04220
malus_domestica MD00G1026600.v1.1 MD02G1038900.v1.1 MD02G1061400.v1.1
prunus_persica Prupe.7G235200_v2.0.a1
pyrus_communis pycom15g16270
rosa_chinensis RchiOBHm_Chr2g0089761
rosa_laevigata RLG00000016053
rosa_multiflora Rmu_sc0000665.1_g000010
rosa_roxburghii Rroxscaffold_2G00151640
rosa_rugosa Rorug02G0003000
rosa_samantha Rh2AG048200 Rh2BG047000 Rh2CG049100 Rh2DG048500
rosa_wichuraiana Rw2G004220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 806
AatII GACGTC 1 cut(s) 411
AccB1I GGYRCC 1 cut(s) 634
AccBSI CCGCTC 3 cut(s) 1419, 1557, 1626
AccII CGCG 1 cut(s) 562
AclWI GGATC 5 cut(s) 94, 100, 183, 745, 1408
AcoI YGGCCR 2 cut(s) 120, 213
AcsI RAATTY 2 cut(s) 313, 983
AcuI CTGAAG 1 cut(s) 864
AcyI GRCGYC 2 cut(s) 30, 408
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 8 cut(s) 334, 567, 582, 762, 890, 905, 972, 1124
AjnI CCWGG 2 cut(s) 432, 954
AjuI GAANNNNNNNTTGG 2 cut(s) 785, 817
AleI CACNNNNGTG 1 cut(s) 140
AloI GAACNNNNNNTCC 2 cut(s) 492, 524
AluBI AGCT 9 cut(s) 12, 163, 266, 371, 446, 861, 893, 1052, 1120
AluI AGCT 9 cut(s) 12, 163, 266, 371, 446, 861, 893, 1052, 1120
Alw26I GTCTC 2 cut(s) 270, 347
AlwI GGATC 5 cut(s) 94, 100, 183, 745, 1408
AoxI GGCC 5 cut(s) 120, 213, 601, 660, 872
ApeKI GCWGC 5 cut(s) 368, 696, 914, 917, 1117
ApoI RAATTY 2 cut(s) 313, 983
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 5 cut(s) 245, 427, 602, 1163, 1612
AsuC2I CCSGG 2 cut(s) 212, 417
AsuHPI GGTGA 3 cut(s) 154, 371, 1607
AvaII GGWCC 4 cut(s) 245, 427, 1163, 1612
BaeGI GKGCMC 2 cut(s) 422, 637
BanI GGYRCC 1 cut(s) 634
BbsI GAAGAC 1 cut(s) 1338
BbvI GCAGC 5 cut(s) 380, 708, 926, 929, 1129
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BciT130I CCWGG 2 cut(s) 434, 956
BcnI CCSGG 2 cut(s) 212, 417
BcoDI GTCTC 2 cut(s) 270, 347
BfaI CTAG 2 cut(s) 318, 855
BfmI CTRYAG 2 cut(s) 372, 1083
BfoI RGCGCY 1 cut(s) 21
BglII AGATCT 1 cut(s) 713
BisI GCNGC 8 cut(s) 33, 73, 326, 369, 697, 915, 918, 1118
BlsI GCNGC 8 cut(s) 34, 74, 327, 370, 698, 916, 919, 1119
BmcAI AGTACT 1 cut(s) 380
Bme1390I CCNGG 4 cut(s) 212, 417, 434, 956
Bme18I GGWCC 4 cut(s) 245, 427, 1163, 1612
BmgT120I GGNCC 5 cut(s) 245, 427, 602, 1163, 1612
BmiI GGNNCC 4 cut(s) 193, 247, 636, 1164
BmrFI CCNGG 4 cut(s) 212, 417, 434, 956
BmrI ACTGGG 1 cut(s) 1237
BmuI ACTGGG 1 cut(s) 1237
BpiI GAAGAC 1 cut(s) 1338
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 2 cut(s) 242, 917
BpuMI CCSGG 2 cut(s) 212, 417
BsaBI GATNNNNATC 2 cut(s) 104, 810
BsaHI GRCGYC 2 cut(s) 30, 408
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 3 cut(s) 55, 653, 1615
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse1I ACTGG 1 cut(s) 1232
Bse8I GATNNNNATC 2 cut(s) 104, 810
BseBI CCWGG 2 cut(s) 434, 956
BseDI CCNNGG 3 cut(s) 55, 653, 1615
BseGI GGATG 9 cut(s) 65, 811, 1325, 1439, 1453, 1508, 1522, 1577, 1591
BseJI GATNNNNATC 2 cut(s) 104, 810
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 4 cut(s) 162, 358, 659, 711
BseNI ACTGG 1 cut(s) 1232
BseRI GAGGAG 3 cut(s) 597, 920, 1267
BseSI GKGCMC 2 cut(s) 422, 637
BseXI GCAGC 5 cut(s) 380, 708, 926, 929, 1129
BseYI CCCAGC 1 cut(s) 1052
Bsh1236I CGCG 1 cut(s) 562
BshFI GGCC 5 cut(s) 122, 215, 603, 662, 874
BshNI GGYRCC 1 cut(s) 634
BsiSI CCGG 3 cut(s) 15, 212, 416
BslFI GGGAC 3 cut(s) 231, 499, 881
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 2 cut(s) 270, 347
BsmFI GGGAC 3 cut(s) 231, 499, 881
BsmI GAATGC 1 cut(s) 967
BsnI GGCC 5 cut(s) 122, 215, 603, 662, 874
Bso31I GGTCTC 1 cut(s) 347
Bsp1286I GDGCHC 2 cut(s) 422, 637
Bsp143I GATC 6 cut(s) 99, 105, 175, 713, 750, 1400
BspANI GGCC 5 cut(s) 122, 215, 603, 662, 874
BspCNI CTCAG 4 cut(s) 161, 357, 658, 712
BspFNI CGCG 1 cut(s) 562
BspLI GGNNCC 4 cut(s) 193, 247, 636, 1164
BspMAI CTGCAG 1 cut(s) 1087
BspPI GGATC 5 cut(s) 94, 100, 183, 745, 1408
BspT107I GGYRCC 1 cut(s) 634
BspTNI GGTCTC 1 cut(s) 347
BsrBI CCGCTC 3 cut(s) 1419, 1557, 1626
BsrI ACTGG 1 cut(s) 1232
BssECI CCNNGG 3 cut(s) 55, 653, 1615
BssMI GATC 6 cut(s) 99, 105, 175, 713, 750, 1400
BssNI GRCGYC 2 cut(s) 30, 408
Bst2UI CCWGG 2 cut(s) 434, 956
Bst4CI ACNGT 3 cut(s) 139, 493, 1391
Bst6I CTCTTC 8 cut(s) 225, 840, 1002, 1273, 1279, 1309, 1363, 1417
BstACI GRCGYC 2 cut(s) 30, 408
BstC8I GCNNGC 1 cut(s) 660
BstDEI CTNAG 7 cut(s) 47, 148, 344, 423, 645, 690, 720
BstDSI CCRYGG 1 cut(s) 1615
BstF5I GGATG 9 cut(s) 65, 811, 1325, 1439, 1453, 1508, 1522, 1577, 1591
BstFNI CGCG 1 cut(s) 562
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 6 cut(s) 102, 108, 178, 716, 753, 1403
BstMAI GTCTC 2 cut(s) 270, 347
BstMBI GATC 6 cut(s) 99, 105, 175, 713, 750, 1400
BstMWI GCNNNNNNNGC 2 cut(s) 72, 1082
BstNI CCWGG 2 cut(s) 434, 956
BstNSI RCATGY 1 cut(s) 1204
BstSCI CCNGG 4 cut(s) 210, 415, 432, 954
BstSFI CTRYAG 2 cut(s) 372, 1083
BstSLI GKGCMC 2 cut(s) 422, 637
BstUI CGCG 1 cut(s) 562
BstV1I GCAGC 5 cut(s) 380, 708, 926, 929, 1129
BstV2I GAAGAC 1 cut(s) 1338
BstX2I RGATCY 3 cut(s) 175, 713, 750
BstYI RGATCY 3 cut(s) 175, 713, 750
BsuRI GGCC 5 cut(s) 122, 215, 603, 662, 874
BtgI CCRYGG 1 cut(s) 1615
BtgZI GCGATG 2 cut(s) 110, 606
BtsCI GGATG 9 cut(s) 65, 811, 1325, 1439, 1453, 1508, 1522, 1577, 1591
BtsIMutI CAGTG 2 cut(s) 156, 352
Cac8I GCNNGC 1 cut(s) 660
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 5 cut(s) 245, 427, 602, 1163, 1612
CseI GACGC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 379
CviAII CATG 6 cut(s) 172, 356, 1151, 1201, 1355, 1409
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 7 cut(s) 47, 148, 344, 423, 645, 690, 720
DpnI GATC 6 cut(s) 101, 107, 177, 715, 752, 1402
DpnII GATC 6 cut(s) 99, 105, 175, 713, 750, 1400
DrdI GACNNNNNNGTC 1 cut(s) 806
DseDI GACNNNNNNGTC 1 cut(s) 806
EaeI YGGCCR 2 cut(s) 120, 213
Eam1104I CTCTTC 8 cut(s) 225, 840, 1002, 1273, 1279, 1309, 1363, 1417
EarI CTCTTC 8 cut(s) 225, 840, 1002, 1273, 1279, 1309, 1363, 1417
EciI GGCGGA 1 cut(s) 419
Eco31I GGTCTC 1 cut(s) 347
Eco47I GGWCC 4 cut(s) 245, 427, 1163, 1612
Eco57I CTGAAG 1 cut(s) 864
EcoO109I RGGNCCY 1 cut(s) 1163
EcoRI GAATTC 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 432, 954
FaeI CATG 6 cut(s) 175, 359, 1154, 1204, 1358, 1412
FaqI GGGAC 3 cut(s) 231, 499, 881
FatI CATG 6 cut(s) 171, 355, 1150, 1200, 1354, 1408
FauI CCCGC 1 cut(s) 140
Fnu4HI GCNGC 8 cut(s) 33, 73, 326, 369, 697, 915, 918, 1118
FokI GGATG 9 cut(s) 72, 818, 1332, 1446, 1460, 1515, 1529, 1584, 1598
Fsp4HI GCNGC 8 cut(s) 33, 73, 326, 369, 697, 915, 918, 1118
FspBI CTAG 2 cut(s) 318, 855
GlaI GCGC 1 cut(s) 19
GluI GCNGC 8 cut(s) 33, 73, 326, 369, 697, 915, 918, 1118
GsaI CCCAGC 1 cut(s) 1056
GsuI CTGGAG 2 cut(s) 242, 917
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 5 cut(s) 122, 215, 603, 662, 874
HapII CCGG 3 cut(s) 15, 212, 416
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 2 cut(s) 30, 408
Hin1II CATG 6 cut(s) 175, 359, 1154, 1204, 1358, 1412
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HincII GTYRAC 2 cut(s) 298, 685
HindII GTYRAC 2 cut(s) 298, 685
HinfI GANTC 6 cut(s) 155, 475, 824, 943, 1010, 1145
HpaI GTTAAC 1 cut(s) 685
HpaII CCGG 3 cut(s) 15, 212, 416
HphI GGTGA 3 cut(s) 154, 371, 1607
Hpy166II GTNNAC 3 cut(s) 145, 298, 685
Hpy188I TCNGA 9 cut(s) 28, 160, 191, 403, 679, 713, 721, 1015, 1405
Hpy188III TCNNGA 7 cut(s) 103, 259, 487, 735, 934, 972, 1097
Hpy8I GTNNAC 3 cut(s) 145, 298, 685
Hpy99I CGWCG 6 cut(s) 32, 128, 407, 410, 413, 1391
HpyCH4III ACNGT 3 cut(s) 139, 493, 1391
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 5 cut(s) 385, 625, 866, 1085, 1154
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 1082
HpyF3I CTNAG 7 cut(s) 47, 148, 344, 423, 645, 690, 720
HpySE526I ACGT 1 cut(s) 408
Hsp92I GRCGYC 2 cut(s) 30, 408
Hsp92II CATG 6 cut(s) 175, 359, 1154, 1204, 1358, 1412
HspAI GCGC 1 cut(s) 18
KspAI GTTAAC 1 cut(s) 685
Kzo9I GATC 6 cut(s) 99, 105, 175, 713, 750, 1400
LmnI GCTCC 7 cut(s) 17, 82, 160, 191, 1416, 1554, 1623
Lsp1109I GCAGC 5 cut(s) 380, 708, 926, 929, 1129
MaeI CTAG 2 cut(s) 318, 855
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 1 cut(s) 1340
MalI GATC 6 cut(s) 101, 107, 177, 715, 752, 1402
MbiI CCGCTC 3 cut(s) 1419, 1557, 1626
MboI GATC 6 cut(s) 99, 105, 175, 713, 750, 1400
MflI RGATCY 3 cut(s) 175, 713, 750
MhlI GDGCHC 2 cut(s) 422, 637
MluCI AATT 4 cut(s) 77, 313, 983, 1193
MlyI GAGTC 3 cut(s) 469, 952, 1019
MmeI TCCRAC 3 cut(s) 51, 426, 993
MseI TTAA 5 cut(s) 572, 684, 831, 1191, 1206
MslI CAYNNNNRTG 2 cut(s) 140, 1098
MspI CCGG 3 cut(s) 15, 212, 416
MspR9I CCNGG 4 cut(s) 212, 417, 434, 956
Mva1269I GAATGC 1 cut(s) 967
MvaI CCWGG 2 cut(s) 434, 956
MvnI CGCG 1 cut(s) 562
MwoI GCNNNNNNNGC 2 cut(s) 72, 1082
NciI CCSGG 2 cut(s) 212, 417
NdeII GATC 6 cut(s) 99, 105, 175, 713, 750, 1400
NlaIII CATG 6 cut(s) 175, 359, 1154, 1204, 1358, 1412
NlaIV GGNNCC 4 cut(s) 193, 247, 636, 1164
NmeAIII GCCGAG 1 cut(s) 634
NspI RCATGY 1 cut(s) 1204
OliI CACNNNNGTG 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PctI GAATGC 1 cut(s) 967
PfeI GAWTC 3 cut(s) 155, 824, 1145
PflFI GACNNNGTC 1 cut(s) 407
PkrI GCNGC 8 cut(s) 34, 74, 327, 370, 698, 916, 919, 1119
PleI GAGTC 3 cut(s) 469, 951, 1018
PpsI GAGTC 3 cut(s) 469, 951, 1018
PpuMI RGGWCCY 1 cut(s) 1163
Psp5II RGGWCCY 1 cut(s) 1163
Psp6I CCWGG 2 cut(s) 432, 954
PspFI CCCAGC 1 cut(s) 1052
PspGI CCWGG 2 cut(s) 432, 954
PspN4I GGNNCC 4 cut(s) 193, 247, 636, 1164
PspPI GGNCC 5 cut(s) 245, 427, 602, 1163, 1612
PspPPI RGGWCCY 1 cut(s) 1163
PstI CTGCAG 1 cut(s) 1087
PsuI RGATCY 3 cut(s) 175, 713, 750
PsyI GACNNNGTC 1 cut(s) 407
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
RseI CAYNNNNRTG 2 cut(s) 140, 1098
SaqAI TTAA 5 cut(s) 572, 684, 831, 1191, 1206
SatI GCNGC 8 cut(s) 33, 73, 326, 369, 697, 915, 918, 1118
Sau3AI GATC 6 cut(s) 99, 105, 175, 713, 750, 1400
Sau96I GGNCC 5 cut(s) 245, 427, 602, 1163, 1612
ScaI AGTACT 1 cut(s) 380
SchI GAGTC 3 cut(s) 469, 952, 1019
ScrFI CCNGG 4 cut(s) 212, 417, 434, 956
SduI GDGCHC 2 cut(s) 422, 637
SfcI CTRYAG 2 cut(s) 372, 1083
SinI GGWCC 4 cut(s) 245, 427, 1163, 1612
SmiMI CAYNNNNRTG 2 cut(s) 140, 1098
Sse9I AATT 4 cut(s) 77, 313, 983, 1193
SspI AATATT 1 cut(s) 548
SspMI CTAG 2 cut(s) 318, 855
StyD4I CCNGG 4 cut(s) 210, 415, 432, 954
TaaI ACNGT 3 cut(s) 139, 493, 1391
TaiI ACGT 1 cut(s) 411
TaqI TCGA 1 cut(s) 39
TaqII GACCGA 1 cut(s) 233
TasI AATT 4 cut(s) 77, 313, 983, 1193
TatI WGTACW 1 cut(s) 378
TauI GCSGC 3 cut(s) 35, 75, 328
TfiI GAWTC 3 cut(s) 155, 824, 1145
Tru1I TTAA 5 cut(s) 572, 684, 831, 1191, 1206
Tru9I TTAA 5 cut(s) 572, 684, 831, 1191, 1206
TscAI CASTG 2 cut(s) 156, 352
TseI GCWGC 5 cut(s) 368, 696, 914, 917, 1117
TspDTI ATGAA 7 cut(s) 384, 537, 551, 849, 1082, 1344, 1371
TspGWI ACGGA 4 cut(s) 836, 1494, 1563, 1632
TspRI CASTG 2 cut(s) 156, 352
Tth111I GACNNNGTC 1 cut(s) 407
VpaK11BI GGWCC 4 cut(s) 245, 427, 1163, 1612
XapI RAATTY 2 cut(s) 313, 983
XceI RCATGY 1 cut(s) 1204
XspI CTAG 2 cut(s) 318, 855
ZraI GACGTC 1 cut(s) 409
ZrmI AGTACT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.