Rh2DG048500

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0011849
Physical Location & Seq
Forward (+)
3469573 .. 3472534
2962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG048500.1

Sequence Viewer

Length: 1629 bp
ATGATTTTTTTGGTTGTTTGTTTTGATCAGATAGCTTGGGTTAGAGACATTACGAGTAGTAATGTTGACGATTTTGCGAGGAATTCTAGTCGGCGGCTTTTGAAACTTGGTCTCAGTGATGGACATGGTGAGGTAGCAGCTATAGAGTACTTGCATATCCCTTCATTCTCCGACGACGTCGTTCCGGGCACTAAGGTCCGCCTGGAAAATAAAGCTATTATACGAAATGGGATAGTATGTTTGACTCCTAAAGTCTTGACCGTGTTAGGAGGTGTTGTTCAGTCCCTTTATGAAGAATGGCAGATGAATAAAAAATATTCAGGTTTTTCGCGTTCAACTTTAAGGCTTTCAAAGGAAAGCGATGGTAATGGCCCTCCTCCATTTGAGAAGTTGCAAGTTGGGGTACCCAAAACTCAGTTTCCTCGGCAGGACAAGTCTTATCAGTCTGATGTTAACACTAAGAGCAGCGATCCTACTATCAGATCTTCTGAGATAAGACCATCTGGAAAGCAACAGCAGATCCTTCTTTCAAAGTCAAATGGTATTGATAACCCAAATAAGAAAAATGACTTGGATGTGAATCTAAAGACGGATTCTGTTAATGAAAGAACTGAAGAGAAACCTAGTAGCTCTGCAACAAGGCCAAAAGAAGTTGTTGAAGCTGTCCCTGTTCAAAACCAAGCAGCAGCACAGAAACTCCTCCAGAAAATGAGTCATCAAAACCAGGATAGTAGGCATTCAAGAGGTAGAAAATTTAGAGGCAAGGGTAGGGAGGAAGAGTCGGAGGTATTCACTTTGGAAGAATGGGAAAAGAAGAAAGCTGGGGCAAAGCCTTCCATAACCGCCACTTCTGCAGTTGTTCATCGTGATGAGGAACTTGCTTGGCAGCTTCAAAATCAGTTTGATTTAGAAGATTCTCGTGCACAAATGGGTCCTCAAAATGTGGAGGCAGAGGATATTAAATTGAGCATGTTTAAGTATGAGAAGAATGACGACTGGGGTAGTGGAATGGGAAATGAGAGGAGAGGGAGAGGGAGAGGGAGAGGAAGAGGAAGAGGGAAAGGGAGAGGGAGGGGAAGAGGATGGGAAGATGAAGACAGGGGTTACGAAATGGAACATGAAAGGAGTGGAAGAGGAAGGGAAGATGACGACGGTGGTTATGGATCGGAACATGGAAGGAGCGGAAGAGGGAGAGGATGGGGAAGAAGGGATGATGATGGTGGTGGTTATGGAATGGAATACGGAAGGAGTGGAAGTGGCAGGGGATGGGGAAGAAGGGATGATGGTGGTGGTGGTTATGGAATGGAACACGGAAGGAGTGGAAGTGGGAGCGGATGGGGAAGAAGGGATGATGCTGGTGGGGGTTATGGAATGGAACACGGAAGGAGCGGAAGTGGGAGAGGAAGGGAAGATGACGACGGTGGTTATGGATCGGAACATGGAAGGAGCGGAAGAGGGAGAGGATGGGGAAGAAGGGATGATGATGGTGGTGGTTATGGAATGGAACACGGAAGGAGTGGAAGTGGGAGAGGATGGGGAAGAAGGGATGATGATGGTGGGGGTTATGGAATGGAACACGGAAGGAGCGGAAGTGGGAGAGGAAGGGGAAGCGGGAGCAGAGGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

542

Amino Acids

59.57

Weight (kDa)

9.25

Isoelectric Point (pI)

43.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RMI1_N_C PF08585 26 - 102 2e-17 RMI1, N-terminal OB-fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011849)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19950 AT5G19950 AT5G19950
fragaria_vesca FvH4_1g04220
malus_domestica MD00G1026600.v1.1 MD02G1038900.v1.1 MD02G1061400.v1.1
prunus_persica Prupe.7G235200_v2.0.a1
pyrus_communis pycom15g16270
rosa_chinensis RchiOBHm_Chr2g0089761
rosa_laevigata RLG00000016053
rosa_multiflora Rmu_sc0000665.1_g000010
rosa_roxburghii Rroxscaffold_2G00151640
rosa_rugosa Rorug02G0003000
rosa_samantha Rh2AG048200 Rh2BG047000 Rh2CG049100 Rh2DG048500
rosa_wichuraiana Rw2G004220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
Acc65I GGTACC 1 cut(s) 403
AccB1I GGYRCC 1 cut(s) 403
AccBSI CCGCTC 5 cut(s) 1182, 1332, 1389, 1449, 1587
AccII CGCG 1 cut(s) 331
AciI CCGC 9 cut(s) 94, 199, 843, 1182, 1332, 1389, 1449, 1587, 1611
AclWI GGATC 4 cut(s) 464, 514, 1171, 1438
AcsI RAATTY 2 cut(s) 82, 752
AcuI CTGAAG 1 cut(s) 633
AcyI GRCGYC 1 cut(s) 177
AfaI GTAC 2 cut(s) 149, 405
AgsI TTSAA 8 cut(s) 103, 336, 351, 531, 659, 674, 741, 893
AjnI CCWGG 2 cut(s) 201, 723
AjuI GAANNNNNNNTTGG 2 cut(s) 554, 586
AloI GAACNNNNNNTCC 2 cut(s) 261, 293
AluBI AGCT 7 cut(s) 35, 140, 215, 630, 662, 821, 889
AluI AGCT 7 cut(s) 35, 140, 215, 630, 662, 821, 889
Alw21I GWGCWC 1 cut(s) 925
Alw26I GTCTC 2 cut(s) 39, 116
Alw44I GTGCAC 1 cut(s) 921
AlwI GGATC 4 cut(s) 464, 514, 1171, 1438
AoxI GGCC 2 cut(s) 370, 641
ApaLI GTGCAC 1 cut(s) 921
ApeKI GCWGC 5 cut(s) 137, 465, 683, 686, 886
ApoI RAATTY 2 cut(s) 82, 752
Asp718I GGTACC 1 cut(s) 403
AspS9I GGNCC 3 cut(s) 196, 371, 932
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 2 cut(s) 196, 932
BaeGI GKGCMC 2 cut(s) 191, 925
BanI GGYRCC 1 cut(s) 403
BauI CACGAG 1 cut(s) 918
BbsI GAAGAC 1 cut(s) 1101
Bbv12I GWGCWC 1 cut(s) 925
BbvI GCAGC 5 cut(s) 149, 477, 695, 698, 898
BciT130I CCWGG 2 cut(s) 203, 725
BclI TGATCA 1 cut(s) 25
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 2 cut(s) 39, 116
BfaI CTAG 2 cut(s) 87, 624
BfmI CTRYAG 2 cut(s) 141, 852
BglII AGATCT 1 cut(s) 482
BisI GCNGC 6 cut(s) 95, 138, 466, 684, 687, 887
BlsI GCNGC 6 cut(s) 96, 139, 467, 685, 688, 888
BmcAI AGTACT 1 cut(s) 149
Bme1390I CCNGG 3 cut(s) 186, 203, 725
Bme18I GGWCC 2 cut(s) 196, 932
BmgT120I GGNCC 3 cut(s) 196, 371, 932
BmiI GGNNCC 2 cut(s) 405, 933
BmrFI CCNGG 3 cut(s) 186, 203, 725
BmrI ACTGGG 1 cut(s) 1006
BmsI GCATC 1 cut(s) 1342
BmuI ACTGGG 1 cut(s) 1006
BpiI GAAGAC 1 cut(s) 1101
BpmI CTGGAG 1 cut(s) 686
BpuMI CCSGG 1 cut(s) 186
BsaBI GATNNNNATC 1 cut(s) 579
BsaHI GRCGYC 1 cut(s) 177
BsaI GGTCTC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 422
Bse1I ACTGG 1 cut(s) 1001
Bse8I GATNNNNATC 1 cut(s) 579
BseBI CCWGG 2 cut(s) 203, 725
BseDI CCNNGG 1 cut(s) 422
BseJI GATNNNNATC 1 cut(s) 579
BseMII CTCAG 3 cut(s) 127, 428, 480
BseNI ACTGG 1 cut(s) 1001
BseRI GAGGAG 3 cut(s) 366, 689, 1036
BseSI GKGCMC 2 cut(s) 191, 925
BseXI GCAGC 5 cut(s) 149, 477, 695, 698, 898
BseYI CCCAGC 1 cut(s) 821
Bsh1236I CGCG 1 cut(s) 331
BshFI GGCC 2 cut(s) 372, 643
BshNI GGYRCC 1 cut(s) 403
BsiHKAI GWGCWC 1 cut(s) 925
BsiSI CCGG 1 cut(s) 185
BslFI GGGAC 2 cut(s) 268, 650
BsmAI GTCTC 2 cut(s) 39, 116
BsmFI GGGAC 2 cut(s) 268, 650
BsmI GAATGC 1 cut(s) 736
BsnI GGCC 2 cut(s) 372, 643
Bso31I GGTCTC 1 cut(s) 116
Bsp1286I GDGCHC 2 cut(s) 191, 925
Bsp143I GATC 6 cut(s) 25, 469, 482, 519, 1163, 1430
BspACI CCGC 9 cut(s) 94, 199, 843, 1182, 1332, 1389, 1449, 1587, 1611
BspANI GGCC 2 cut(s) 372, 643
BspCNI CTCAG 3 cut(s) 126, 427, 481
BspFNI CGCG 1 cut(s) 331
BspLI GGNNCC 2 cut(s) 405, 933
BspMAI CTGCAG 1 cut(s) 856
BspPI GGATC 4 cut(s) 464, 514, 1171, 1438
BspT107I GGYRCC 1 cut(s) 403
BspTNI GGTCTC 1 cut(s) 116
BsrBI CCGCTC 5 cut(s) 1182, 1332, 1389, 1449, 1587
BsrI ACTGG 1 cut(s) 1001
BssECI CCNNGG 1 cut(s) 422
BssMI GATC 6 cut(s) 25, 469, 482, 519, 1163, 1430
BssNI GRCGYC 1 cut(s) 177
BssSI CACGAG 1 cut(s) 918
Bst2BI CACGAG 1 cut(s) 918
Bst2UI CCWGG 2 cut(s) 203, 725
Bst4CI ACNGT 3 cut(s) 262, 1154, 1421
Bst6I CTCTTC 8 cut(s) 609, 771, 1042, 1048, 1072, 1126, 1180, 1447
BstACI GRCGYC 1 cut(s) 177
BstDEI CTNAG 5 cut(s) 113, 192, 414, 459, 489
BstFNI CGCG 1 cut(s) 331
BstKTI GATC 6 cut(s) 28, 472, 485, 522, 1166, 1433
BstMAI GTCTC 2 cut(s) 39, 116
BstMBI GATC 6 cut(s) 25, 469, 482, 519, 1163, 1430
BstMWI GCNNNNNNNGC 1 cut(s) 851
BstNI CCWGG 2 cut(s) 203, 725
BstNSI RCATGY 1 cut(s) 973
BstSCI CCNGG 3 cut(s) 184, 201, 723
BstSFI CTRYAG 2 cut(s) 141, 852
BstSLI GKGCMC 2 cut(s) 191, 925
BstUI CGCG 1 cut(s) 331
BstV1I GCAGC 5 cut(s) 149, 477, 695, 698, 898
BstV2I GAAGAC 1 cut(s) 1101
BstX2I RGATCY 2 cut(s) 482, 519
BstYI RGATCY 2 cut(s) 482, 519
BsuRI GGCC 2 cut(s) 372, 643
BtgZI GCGATG 1 cut(s) 375
BtsIMutI CAGTG 1 cut(s) 121
Cfr13I GGNCC 3 cut(s) 196, 371, 932
Csp6I GTAC 2 cut(s) 148, 404
CviAII CATG 5 cut(s) 125, 970, 1118, 1172, 1439
CviQI GTAC 2 cut(s) 148, 404
DdeI CTNAG 5 cut(s) 113, 192, 414, 459, 489
DpnI GATC 6 cut(s) 27, 471, 484, 521, 1165, 1432
DpnII GATC 6 cut(s) 25, 469, 482, 519, 1163, 1430
Eam1104I CTCTTC 8 cut(s) 609, 771, 1042, 1048, 1072, 1126, 1180, 1447
EarI CTCTTC 8 cut(s) 609, 771, 1042, 1048, 1072, 1126, 1180, 1447
EciI GGCGGA 1 cut(s) 188
Eco31I GGTCTC 1 cut(s) 116
Eco47I GGWCC 2 cut(s) 196, 932
Eco57I CTGAAG 1 cut(s) 633
EcoO109I RGGNCCY 1 cut(s) 932
EcoRI GAATTC 1 cut(s) 82
EcoRII CCWGG 2 cut(s) 201, 723
FaeI CATG 5 cut(s) 128, 973, 1121, 1175, 1442
FaqI GGGAC 2 cut(s) 268, 650
FatI CATG 5 cut(s) 124, 969, 1117, 1171, 1438
FauI CCCGC 1 cut(s) 1604
FbaI TGATCA 1 cut(s) 25
Fnu4HI GCNGC 6 cut(s) 95, 138, 466, 684, 687, 887
Fsp4HI GCNGC 6 cut(s) 95, 138, 466, 684, 687, 887
FspBI CTAG 2 cut(s) 87, 624
GluI GCNGC 6 cut(s) 95, 138, 466, 684, 687, 887
GsaI CCCAGC 1 cut(s) 825
GsuI CTGGAG 1 cut(s) 686
HaeIII GGCC 2 cut(s) 372, 643
HapII CCGG 1 cut(s) 185
Hin1I GRCGYC 1 cut(s) 177
Hin1II CATG 5 cut(s) 128, 973, 1121, 1175, 1442
HincII GTYRAC 2 cut(s) 67, 454
HindII GTYRAC 2 cut(s) 67, 454
HinfI GANTC 6 cut(s) 244, 580, 593, 712, 779, 914
HpaI GTTAAC 1 cut(s) 454
HpaII CCGG 1 cut(s) 185
HphI GGTGA 1 cut(s) 140
Hpy166II GTNNAC 3 cut(s) 67, 454, 923
Hpy188I TCNGA 8 cut(s) 30, 172, 448, 482, 490, 784, 1168, 1435
Hpy188III TCNNGA 5 cut(s) 256, 504, 703, 741, 866
Hpy8I GTNNAC 3 cut(s) 67, 454, 923
Hpy99I CGWCG 5 cut(s) 176, 179, 182, 1154, 1421
HpyCH4III ACNGT 3 cut(s) 262, 1154, 1421
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 5 cut(s) 154, 394, 635, 854, 923
HpyF10VI GCNNNNNNNGC 1 cut(s) 851
HpyF3I CTNAG 5 cut(s) 113, 192, 414, 459, 489
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 1 cut(s) 177
Hsp92II CATG 5 cut(s) 128, 973, 1121, 1175, 1442
KpnI GGTACC 1 cut(s) 407
Ksp22I TGATCA 1 cut(s) 25
KspAI GTTAAC 1 cut(s) 454
Kzo9I GATC 6 cut(s) 25, 469, 482, 519, 1163, 1430
LmnI GCTCC 6 cut(s) 1179, 1329, 1386, 1446, 1584, 1614
Lsp1109I GCAGC 5 cut(s) 149, 477, 695, 698, 898
LweI GCATC 1 cut(s) 1342
MaeI CTAG 2 cut(s) 87, 624
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 1 cut(s) 1103
MalI GATC 6 cut(s) 27, 471, 484, 521, 1165, 1432
MbiI CCGCTC 5 cut(s) 1182, 1332, 1389, 1449, 1587
MboI GATC 6 cut(s) 25, 469, 482, 519, 1163, 1430
MflI RGATCY 2 cut(s) 482, 519
MhlI GDGCHC 2 cut(s) 191, 925
MluCI AATT 3 cut(s) 82, 752, 962
MlyI GAGTC 3 cut(s) 238, 721, 788
MmeI TCCRAC 2 cut(s) 195, 762
MseI TTAA 5 cut(s) 341, 453, 600, 960, 975
MslI CAYNNNNRTG 1 cut(s) 867
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 3 cut(s) 186, 203, 725
Mva1269I GAATGC 1 cut(s) 736
MvaI CCWGG 2 cut(s) 203, 725
MvnI CGCG 1 cut(s) 331
MwoI GCNNNNNNNGC 1 cut(s) 851
NciI CCSGG 1 cut(s) 186
NdeII GATC 6 cut(s) 25, 469, 482, 519, 1163, 1430
NlaIII CATG 5 cut(s) 128, 973, 1121, 1175, 1442
NlaIV GGNNCC 2 cut(s) 405, 933
NmeAIII GCCGAG 1 cut(s) 403
NspI RCATGY 1 cut(s) 973
PctI GAATGC 1 cut(s) 736
PfeI GAWTC 3 cut(s) 580, 593, 914
PflFI GACNNNGTC 1 cut(s) 176
PkrI GCNGC 6 cut(s) 96, 139, 467, 685, 688, 888
PleI GAGTC 3 cut(s) 238, 720, 787
PpsI GAGTC 3 cut(s) 238, 720, 787
PpuMI RGGWCCY 1 cut(s) 932
Psp5II RGGWCCY 1 cut(s) 932
Psp6I CCWGG 2 cut(s) 201, 723
PspFI CCCAGC 1 cut(s) 821
PspGI CCWGG 2 cut(s) 201, 723
PspN4I GGNNCC 2 cut(s) 405, 933
PspPI GGNCC 3 cut(s) 196, 371, 932
PspPPI RGGWCCY 1 cut(s) 932
PstI CTGCAG 1 cut(s) 856
PsuI RGATCY 2 cut(s) 482, 519
PsyI GACNNNGTC 1 cut(s) 176
RsaI GTAC 2 cut(s) 149, 405
RsaNI GTAC 2 cut(s) 148, 404
RseI CAYNNNNRTG 1 cut(s) 867
SaqAI TTAA 5 cut(s) 341, 453, 600, 960, 975
SatI GCNGC 6 cut(s) 95, 138, 466, 684, 687, 887
Sau3AI GATC 6 cut(s) 25, 469, 482, 519, 1163, 1430
Sau96I GGNCC 3 cut(s) 196, 371, 932
ScaI AGTACT 1 cut(s) 149
SchI GAGTC 3 cut(s) 238, 721, 788
ScrFI CCNGG 3 cut(s) 186, 203, 725
SduI GDGCHC 2 cut(s) 191, 925
SfaNI GCATC 1 cut(s) 1342
SfcI CTRYAG 2 cut(s) 141, 852
SinI GGWCC 2 cut(s) 196, 932
SmiMI CAYNNNNRTG 1 cut(s) 867
Sse9I AATT 3 cut(s) 82, 752, 962
SsiI CCGC 9 cut(s) 94, 199, 843, 1182, 1332, 1389, 1449, 1587, 1611
SspI AATATT 1 cut(s) 317
SspMI CTAG 2 cut(s) 87, 624
StyD4I CCNGG 3 cut(s) 184, 201, 723
TaaI ACNGT 3 cut(s) 262, 1154, 1421
TaiI ACGT 1 cut(s) 180
TasI AATT 3 cut(s) 82, 752, 962
TatI WGTACW 1 cut(s) 147
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 3 cut(s) 580, 593, 914
Tru1I TTAA 5 cut(s) 341, 453, 600, 960, 975
Tru9I TTAA 5 cut(s) 341, 453, 600, 960, 975
TscAI CASTG 1 cut(s) 121
TseI GCWGC 5 cut(s) 137, 465, 683, 686, 886
TspDTI ATGAA 7 cut(s) 153, 306, 320, 618, 851, 1107, 1134
TspGWI ACGGA 6 cut(s) 605, 1257, 1326, 1395, 1524, 1593
TspRI CASTG 1 cut(s) 121
Tth111I GACNNNGTC 1 cut(s) 176
VneI GTGCAC 1 cut(s) 921
VpaK11BI GGWCC 2 cut(s) 196, 932
XapI RAATTY 2 cut(s) 82, 752
XceI RCATGY 1 cut(s) 973
XspI CTAG 2 cut(s) 87, 624
ZraI GACGTC 1 cut(s) 178
ZrmI AGTACT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.