Rroxscaffold_2G00151640

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0011849
Physical Location & Seq
Reverse (-)
88847643 .. 88856867
9225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00151640.1

Sequence Viewer

Length: 1629 bp
ATGGGTTTCCTCATAGAGTATGGAAAACAGTATACTGTTTTCTCGCCTAACCTAGCTACTAAACTTTTTCACCAAGGTAATCTAAGCGTTCAATTATCGCATCTAGCTACTTGTAGTTGGCAAATAGGAAGGCTTGATCCGACGTTAGTAATCCATCAGTCAATTCTTGCTTCAATGCATTGCTCTATGGCACATGCATATATCATATATGTTTCAGTTAGGATGAAGCTTGCATGCACAGTTTTTCTTAAACTGACATCAATTCCATCTCTCCCCAATCTATTCATCTTCCTCATCCTCTTCACCACCACAGTACAACCCTTTCTTGCTCCATATTTTGTCCAGATAGCTTGGGTTAGAGACATTACGAGTAGTGATGTTGACGATTTTGCGAGGAATTCTAGTCGGCGGCTTTTGAAACTTGGTCTCAGTGATGGACATGGTGAGGTAGCAGCTATAGAGTACTTGCATATCCCTTCATTCTCCGACGACGTCGTTCCGGGCACTAAGGTCCGCCTGGAAAATAAAGCTATTATACGAAATGGGATGGTATGTTTGACTCCTAAAGTCTTGACCGTGTTAGGAGGTGTTGTTCAGTCCCTTTATGAAGAATGGCAGATGAATAAAAAATATTCAGGTTTTTCGCGTTCAACTTTAAGGCTTTCAAAGGAAAGCGATGGTAATGGCCCTCCTCCATTTGAGAAGTTGCAAGTTGGGGCACCCAAAACTCAGTTTCCTCGGCAGGACAAGTCTTATCAGTCTGATGTTAACACTAAGAGCAGCGATCCTACCATCAGATCTTCTGAGATAAGACCATCTGGAAAGCAACAGCAGAACCTTCTTTCAAAGTCAAATGGTATTGATAACCCTAATAAGAAAAATGACGTGGATGTCAATCTAAAGATGGATTCTGTTAATGAAAGAACTGAAGAGAAACCTAGTAGCTCTGCAACAAGGCCAAAAGAAGTTGTTGAAGCTGTCCCTGTTCAAAACCAAGCAGCAGCACAGAAACTCCTCCAGAAAATGAGTCATCAAAACCAGGATAGTAGGCATTCAAGAGGTAGAAAATTTAGAGGCAAGGGTAGGGAGGAAGAGTCGGAGGTATTCACTTTGGAAGAATGGGAAAAGAGGAAAGCTGGGGCAAGGCCTTCCATAACCGCCACTTCTGCAGTTGTTCATCGTGATGAGGAACTTGCTTGGCAGCTTCAAAATCAGTTTGATTTAGAAGATTCTCATGCACAAATTGGTCCTCAAAATGTGGAGGCAGAGGATATTAAATTGAGCATGTTTAAGTATGATAAGAATGACGACTGGGGGGTTACGAAATGGAACATGAAAGGAGTGGAAGAGGGAGAGGAAGGGGAAGAGGATGGGAAGATGAAGACAGGGGTTACGAAATGGAACATGAAAGGAGTGGAAGAGGGAGTGGATGGGGAAGAGGAAGGGAAATGGAACATGAAAGGAGTGGAAGAGGGAGTGGATGGGGAAGAGGAAGGGAAGATGACGACGGTGGTTATGGATCAGAACATGGAAGGAGCGGAAGAGGGGGAGGATGGGGAAGAAGGGATGATGGTGGTGGTGGTTATGGAATGGAACACGGAAGGAGCGGAAGTGGGAGAGGATGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

542

Amino Acids

60.65

Weight (kDa)

5.21

Isoelectric Point (pI)

47.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RMI1_N_C PF08585 132 - 207 1.8e-17 RMI1, N-terminal OB-fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011849)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19950 AT5G19950 AT5G19950
fragaria_vesca FvH4_1g04220
malus_domestica MD00G1026600.v1.1 MD02G1038900.v1.1 MD02G1061400.v1.1
prunus_persica Prupe.7G235200_v2.0.a1
pyrus_communis pycom15g16270
rosa_chinensis RchiOBHm_Chr2g0089761
rosa_laevigata RLG00000016053
rosa_multiflora Rmu_sc0000665.1_g000010
rosa_roxburghii Rroxscaffold_2G00151640
rosa_rugosa Rorug02G0003000
rosa_samantha Rh2AG048200 Rh2BG047000 Rh2CG049100 Rh2DG048500
rosa_wichuraiana Rw2G004220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 890
AatII GACGTC 1 cut(s) 495
AccB1I GGYRCC 1 cut(s) 718
AccBSI CCGCTC 2 cut(s) 1538, 1607
AccI GTMKAC 1 cut(s) 32
AccII CGCG 1 cut(s) 646
AciI CCGC 5 cut(s) 409, 514, 1158, 1538, 1607
AclWI GGATC 3 cut(s) 131, 779, 1527
AcsI RAATTY 2 cut(s) 397, 1067
AcuI CTGAAG 1 cut(s) 948
AcyI GRCGYC 1 cut(s) 492
AfaI GTAC 2 cut(s) 315, 464
AjiI CACGTC 1 cut(s) 886
AjnI CCWGG 2 cut(s) 516, 1038
AloI GAACNNNNNNTCC 2 cut(s) 576, 608
Alw26I GTCTC 2 cut(s) 354, 431
AlwI GGATC 3 cut(s) 131, 779, 1527
AoxI GGCC 3 cut(s) 685, 956, 1145
ApeKI GCWGC 5 cut(s) 452, 780, 998, 1001, 1201
ApoI RAATTY 2 cut(s) 397, 1067
AspS9I GGNCC 3 cut(s) 511, 686, 1247
AsuC2I CCSGG 1 cut(s) 501
AsuHPI GGTGA 3 cut(s) 62, 295, 455
AvaII GGWCC 2 cut(s) 511, 1247
BaeGI GKGCMC 2 cut(s) 506, 721
BanI GGYRCC 1 cut(s) 718
BbsI GAAGAC 1 cut(s) 1388
BbvI GCAGC 5 cut(s) 464, 792, 1010, 1013, 1213
BciT130I CCWGG 2 cut(s) 518, 1040
BcnI CCSGG 1 cut(s) 501
BcoDI GTCTC 2 cut(s) 354, 431
BfaI CTAG 4 cut(s) 53, 104, 402, 939
BfmI CTRYAG 2 cut(s) 456, 1167
BglII AGATCT 1 cut(s) 797
BisI GCNGC 6 cut(s) 410, 453, 781, 999, 1002, 1202
BlsI GCNGC 6 cut(s) 411, 454, 782, 1000, 1003, 1203
BmcAI AGTACT 1 cut(s) 464
Bme1390I CCNGG 3 cut(s) 501, 518, 1040
Bme18I GGWCC 2 cut(s) 511, 1247
BmgBI CACGTC 1 cut(s) 886
BmgT120I GGNCC 3 cut(s) 511, 686, 1247
BmiI GGNNCC 1 cut(s) 720
BmrFI CCNGG 3 cut(s) 501, 518, 1040
BmrI ACTGGG 1 cut(s) 1321
BmsI GCATC 1 cut(s) 109
BmuI ACTGGG 1 cut(s) 1321
BpiI GAAGAC 1 cut(s) 1388
BpmI CTGGAG 1 cut(s) 1001
BpuMI CCSGG 1 cut(s) 501
BsaBI GATNNNNATC 1 cut(s) 894
BsaHI GRCGYC 1 cut(s) 492
BsaI GGTCTC 1 cut(s) 431
BsaJI CCNNGG 2 cut(s) 73, 737
BsaXI ACNNNNNCTCC 8 cut(s) 576, 606, 996, 1026, 1079, 1109, 1596, 1626
Bse1I ACTGG 1 cut(s) 1316
Bse3DI GCAATG 1 cut(s) 178
Bse8I GATNNNNATC 1 cut(s) 894
BseBI CCWGG 2 cut(s) 518, 1040
BseDI CCNNGG 2 cut(s) 73, 737
BseJI GATNNNNATC 1 cut(s) 894
BseMI GCAATG 1 cut(s) 178
BseMII CTCAG 3 cut(s) 442, 743, 795
BseNI ACTGG 1 cut(s) 1316
BseRI GAGGAG 2 cut(s) 681, 1004
BseSI GKGCMC 2 cut(s) 506, 721
BseXI GCAGC 5 cut(s) 464, 792, 1010, 1013, 1213
BseYI CCCAGC 1 cut(s) 1136
Bsh1236I CGCG 1 cut(s) 646
BshFI GGCC 3 cut(s) 687, 958, 1147
BshNI GGYRCC 1 cut(s) 718
BsiSI CCGG 1 cut(s) 500
BslFI GGGAC 2 cut(s) 583, 965
BsmAI GTCTC 2 cut(s) 354, 431
BsmFI GGGAC 2 cut(s) 583, 965
BsmI GAATGC 1 cut(s) 1051
BsnI GGCC 3 cut(s) 687, 958, 1147
Bso31I GGTCTC 1 cut(s) 431
Bsp1286I GDGCHC 2 cut(s) 506, 721
Bsp143I GATC 4 cut(s) 136, 784, 797, 1519
BspACI CCGC 5 cut(s) 409, 514, 1158, 1538, 1607
BspANI GGCC 3 cut(s) 687, 958, 1147
BspCNI CTCAG 3 cut(s) 441, 742, 796
BspFNI CGCG 1 cut(s) 646
BspLI GGNNCC 1 cut(s) 720
BspMAI CTGCAG 1 cut(s) 1171
BspPI GGATC 3 cut(s) 131, 779, 1527
BspT107I GGYRCC 1 cut(s) 718
BspTNI GGTCTC 1 cut(s) 431
BsrBI CCGCTC 2 cut(s) 1538, 1607
BsrDI GCAATG 1 cut(s) 178
BsrI ACTGG 1 cut(s) 1316
BssECI CCNNGG 2 cut(s) 73, 737
BssMI GATC 4 cut(s) 136, 784, 797, 1519
BssNAI GTATAC 1 cut(s) 33
BssNI GRCGYC 1 cut(s) 492
BssT1I CCWWGG 1 cut(s) 73
Bst1107I GTATAC 1 cut(s) 33
Bst2UI CCWGG 2 cut(s) 518, 1040
Bst4CI ACNGT 6 cut(s) 30, 37, 241, 313, 577, 1510
BstACI GRCGYC 1 cut(s) 492
BstC8I GCNNGC 2 cut(s) 231, 235
BstDEI CTNAG 6 cut(s) 83, 428, 507, 729, 774, 804
BstFNI CGCG 1 cut(s) 646
BstKTI GATC 4 cut(s) 139, 787, 800, 1522
BstMAI GTCTC 2 cut(s) 354, 431
BstMBI GATC 4 cut(s) 136, 784, 797, 1519
BstMWI GCNNNNNNNGC 1 cut(s) 1166
BstNI CCWGG 2 cut(s) 518, 1040
BstNSI RCATGY 3 cut(s) 197, 237, 1288
BstSCI CCNGG 3 cut(s) 499, 516, 1038
BstSFI CTRYAG 2 cut(s) 456, 1167
BstSLI GKGCMC 2 cut(s) 506, 721
BstUI CGCG 1 cut(s) 646
BstV1I GCAGC 5 cut(s) 464, 792, 1010, 1013, 1213
BstV2I GAAGAC 1 cut(s) 1388
BstX2I RGATCY 1 cut(s) 797
BstYI RGATCY 1 cut(s) 797
BstZ17I GTATAC 1 cut(s) 33
BsuRI GGCC 3 cut(s) 687, 958, 1147
BtgZI GCGATG 1 cut(s) 690
BtrI CACGTC 1 cut(s) 886
BtsIMutI CAGTG 1 cut(s) 436
Cac8I GCNNGC 2 cut(s) 231, 235
Cfr13I GGNCC 3 cut(s) 511, 686, 1247
Csp6I GTAC 2 cut(s) 314, 463
CviAII CATG 9 cut(s) 194, 234, 440, 1235, 1285, 1333, 1405, 1456, 1528
CviQI GTAC 2 cut(s) 314, 463
DdeI CTNAG 6 cut(s) 83, 428, 507, 729, 774, 804
DpnI GATC 4 cut(s) 138, 786, 799, 1521
DpnII GATC 4 cut(s) 136, 784, 797, 1519
DrdI GACNNNNNNGTC 1 cut(s) 890
DseDI GACNNNNNNGTC 1 cut(s) 890
EciI GGCGGA 1 cut(s) 503
Eco130I CCWWGG 1 cut(s) 73
Eco147I AGGCCT 1 cut(s) 1147
Eco31I GGTCTC 1 cut(s) 431
Eco47I GGWCC 2 cut(s) 511, 1247
Eco57I CTGAAG 1 cut(s) 948
EcoRI GAATTC 1 cut(s) 397
EcoRII CCWGG 2 cut(s) 516, 1038
EcoT14I CCWWGG 1 cut(s) 73
EcoT22I ATGCAT 2 cut(s) 180, 199
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 9 cut(s) 197, 237, 443, 1238, 1288, 1336, 1408, 1459, 1531
FaqI GGGAC 2 cut(s) 583, 965
FatI CATG 9 cut(s) 193, 233, 439, 1234, 1284, 1332, 1404, 1455, 1527
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 6 cut(s) 410, 453, 781, 999, 1002, 1202
FokI GGATG 9 cut(s) 235, 281, 559, 902, 1382, 1442, 1493, 1565, 1579
Fsp4HI GCNGC 6 cut(s) 410, 453, 781, 999, 1002, 1202
FspBI CTAG 4 cut(s) 53, 104, 402, 939
GluI GCNGC 6 cut(s) 410, 453, 781, 999, 1002, 1202
GsaI CCCAGC 1 cut(s) 1140
GsuI CTGGAG 1 cut(s) 1001
HaeIII GGCC 3 cut(s) 687, 958, 1147
HapII CCGG 1 cut(s) 500
Hin1I GRCGYC 1 cut(s) 492
Hin1II CATG 9 cut(s) 197, 237, 443, 1238, 1288, 1336, 1408, 1459, 1531
HincII GTYRAC 2 cut(s) 382, 769
HindII GTYRAC 2 cut(s) 382, 769
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 5 cut(s) 559, 908, 1027, 1094, 1229
HpaI GTTAAC 1 cut(s) 769
HpaII CCGG 1 cut(s) 500
HphI GGTGA 3 cut(s) 62, 295, 455
Hpy166II GTNNAC 3 cut(s) 33, 382, 769
Hpy188I TCNGA 7 cut(s) 141, 487, 763, 797, 805, 1099, 1524
Hpy188III TCNNGA 6 cut(s) 343, 571, 819, 1018, 1056, 1181
Hpy8I GTNNAC 3 cut(s) 33, 382, 769
Hpy99I CGWCG 5 cut(s) 145, 491, 494, 497, 1510
HpyCH4III ACNGT 6 cut(s) 30, 37, 241, 313, 577, 1510
HpyCH4IV ACGT 3 cut(s) 143, 492, 885
HpyCH4V TGCA 9 cut(s) 178, 197, 233, 237, 469, 709, 950, 1169, 1238
HpyF10VI GCNNNNNNNGC 1 cut(s) 1166
HpyF3I CTNAG 6 cut(s) 83, 428, 507, 729, 774, 804
HpySE526I ACGT 3 cut(s) 143, 492, 885
Hsp92I GRCGYC 1 cut(s) 492
Hsp92II CATG 9 cut(s) 197, 237, 443, 1238, 1288, 1336, 1408, 1459, 1531
KspAI GTTAAC 1 cut(s) 769
Kzo9I GATC 4 cut(s) 136, 784, 797, 1519
LmnI GCTCC 3 cut(s) 334, 1535, 1604
Lsp1109I GCAGC 5 cut(s) 464, 792, 1010, 1013, 1213
LweI GCATC 1 cut(s) 109
MaeI CTAG 4 cut(s) 53, 104, 402, 939
MaeII ACGT 3 cut(s) 143, 492, 885
MaeIII GTNAC 2 cut(s) 1318, 1390
MalI GATC 4 cut(s) 138, 786, 799, 1521
MbiI CCGCTC 2 cut(s) 1538, 1607
MboI GATC 4 cut(s) 136, 784, 797, 1519
MflI RGATCY 1 cut(s) 797
MhlI GDGCHC 2 cut(s) 506, 721
MluCI AATT 7 cut(s) 92, 162, 261, 397, 1067, 1242, 1277
MlyI GAGTC 3 cut(s) 553, 1036, 1103
MmeI TCCRAC 3 cut(s) 164, 510, 1077
Mph1103I ATGCAT 2 cut(s) 180, 199
MseI TTAA 6 cut(s) 249, 656, 768, 915, 1275, 1290
MslI CAYNNNNRTG 1 cut(s) 1182
MspI CCGG 1 cut(s) 500
MspR9I CCNGG 3 cut(s) 501, 518, 1040
Mva1269I GAATGC 1 cut(s) 1051
MvaI CCWGG 2 cut(s) 518, 1040
MvnI CGCG 1 cut(s) 646
MwoI GCNNNNNNNGC 1 cut(s) 1166
NciI CCSGG 1 cut(s) 501
NdeII GATC 4 cut(s) 136, 784, 797, 1519
NlaIII CATG 9 cut(s) 197, 237, 443, 1238, 1288, 1336, 1408, 1459, 1531
NlaIV GGNNCC 1 cut(s) 720
NmeAIII GCCGAG 1 cut(s) 718
NsiI ATGCAT 2 cut(s) 180, 199
NspI RCATGY 3 cut(s) 197, 237, 1288
PaeI GCATGC 1 cut(s) 237
PceI AGGCCT 1 cut(s) 1147
PctI GAATGC 1 cut(s) 1051
PfeI GAWTC 2 cut(s) 908, 1229
PflFI GACNNNGTC 1 cut(s) 491
PkrI GCNGC 6 cut(s) 411, 454, 782, 1000, 1003, 1203
PleI GAGTC 3 cut(s) 553, 1035, 1102
PpsI GAGTC 3 cut(s) 553, 1035, 1102
Psp6I CCWGG 2 cut(s) 516, 1038
PspFI CCCAGC 1 cut(s) 1136
PspGI CCWGG 2 cut(s) 516, 1038
PspN4I GGNNCC 1 cut(s) 720
PspPI GGNCC 3 cut(s) 511, 686, 1247
PstI CTGCAG 1 cut(s) 1171
PsuI RGATCY 1 cut(s) 797
PsyI GACNNNGTC 1 cut(s) 491
RsaI GTAC 2 cut(s) 315, 464
RsaNI GTAC 2 cut(s) 314, 463
RseI CAYNNNNRTG 1 cut(s) 1182
SaqAI TTAA 6 cut(s) 249, 656, 768, 915, 1275, 1290
SatI GCNGC 6 cut(s) 410, 453, 781, 999, 1002, 1202
Sau3AI GATC 4 cut(s) 136, 784, 797, 1519
Sau96I GGNCC 3 cut(s) 511, 686, 1247
ScaI AGTACT 1 cut(s) 464
SchI GAGTC 3 cut(s) 553, 1036, 1103
ScrFI CCNGG 3 cut(s) 501, 518, 1040
SduI GDGCHC 2 cut(s) 506, 721
SfaNI GCATC 1 cut(s) 109
SfcI CTRYAG 2 cut(s) 456, 1167
SinI GGWCC 2 cut(s) 511, 1247
SmiMI CAYNNNNRTG 1 cut(s) 1182
SphI GCATGC 1 cut(s) 237
Sse9I AATT 7 cut(s) 92, 162, 261, 397, 1067, 1242, 1277
SseBI AGGCCT 1 cut(s) 1147
SsiI CCGC 5 cut(s) 409, 514, 1158, 1538, 1607
SspI AATATT 1 cut(s) 632
SspMI CTAG 4 cut(s) 53, 104, 402, 939
StuI AGGCCT 1 cut(s) 1147
StyD4I CCNGG 3 cut(s) 499, 516, 1038
StyI CCWWGG 1 cut(s) 73
TaaI ACNGT 6 cut(s) 30, 37, 241, 313, 577, 1510
TaiI ACGT 3 cut(s) 146, 495, 888
TasI AATT 7 cut(s) 92, 162, 261, 397, 1067, 1242, 1277
TatI WGTACW 2 cut(s) 313, 462
TauI GCSGC 1 cut(s) 412
TfiI GAWTC 2 cut(s) 908, 1229
Tru1I TTAA 6 cut(s) 249, 656, 768, 915, 1275, 1290
Tru9I TTAA 6 cut(s) 249, 656, 768, 915, 1275, 1290
TscAI CASTG 1 cut(s) 436
TseI GCWGC 5 cut(s) 452, 780, 998, 1001, 1201
TspGWI ACGGA 1 cut(s) 1613
TspRI CASTG 1 cut(s) 436
Tth111I GACNNNGTC 1 cut(s) 491
VpaK11BI GGWCC 2 cut(s) 511, 1247
XapI RAATTY 2 cut(s) 397, 1067
XceI RCATGY 3 cut(s) 197, 237, 1288
XmiI GTMKAC 1 cut(s) 32
XspI CTAG 4 cut(s) 53, 104, 402, 939
ZraI GACGTC 1 cut(s) 493
ZrmI AGTACT 1 cut(s) 464
Zsp2I ATGCAT 2 cut(s) 180, 199
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.