RchiOBHm_Chr2g0089761

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0011849
Physical Location & Seq
Forward (+)
3846801 .. 3849731
2931 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46506

Sequence Viewer

Length: 1701 bp
ATGGAGGAAAGCTCCGGCGCTCTGTCCGACGCCGCAATCGAAACCCTAAGAAGCCGAGGATGGTACTTCGGCGGCGACTTGGAGCAAGTCCAAGCGATGATCCTGATCCACTCCGCTTTGGCCGACGACACCCGGACGGTGGTGAACTCAGTCGAATCGGAGCTCCTCAACATGGATCTCAAATCCGTCGGAGCCAAGTCGTTGCCCGACCCGGCCACTCTTCGCAAGTCATCTCATCTTCTCGGTCCCAAAATAGCTTGGGTTAGAGACATTACGAGTAGTAATGTTGACGATTTTGCGAGGAATTCTAGTCGGCGGCTTTTGAAACTTGGTCTCAGTGATGGACATGGTGAGGTAGCAGCTATAGAGTACTTGCATATCCCTTCATTCTCCGACGACGTCGTTCCGGGCACTAAGGTCCGCCTGGAAAATAAAGCTATTATACGAAATGGGATAGTATGTTTGACTCCTAAAGTCTTGACCGTGTTAGGAGGTGTTGTTCAGTCCCTTTATGAAGAATGGCAGATGAATAAAAAATATTCAGGTTTTTCGCGTTCAACTCTAAGGCTTTCAAAGGAAAGCGATGGTAATGGCCCTCCTCCATTTGAGAAGTTGCAAGTTGGGGCACCCAAAACTCAGTTTCCTCGGCAGGACAAGTCCTATCAGTCTGATGTTAACACTAAGAGCAGCGATCCTACTATCAGATCTTCTGAGATAAGACCATCTGGAAAGCAACAGCAGATCCTTCTTTCAAAGTCAAATGGTATTGATAACCCTAATAAGAAAAATGACTTGGATGTCAATCTAAAGACGGATTCTGTTAATGAAAGAACTGAAGAGAAACCTAGTAGCTCTGCAACAAGGCCAAAAGAAGTTGTTGAAGCTGTCCCTGTTCAAAACCAAGCAGCAGCACAGAAACTCCTCCAGAAAATGAGTCATCAAAACCAGGATAGTAGGCATTCAAGAGGTAGAAAATTTAGAGGCAAGGGTAGGGAGGAAGAGTCGGAGGTATTCACTTTGGAAGAATGGGAAAAGAGGAAAGCTGGGGCAAAGCCTTCCATAACCGCCACTTCTGCAGTTGTTCATCGTGATGAGGAACTTGCTTGGCGGCTTCAAAATCAGTTTGATTTAGAAGATTCTCATGCACAAATGGGTCCTCAAAATGTGGAGGCAGAGGATATTAAATTGAGCATGTTTAAGTATGAGAAGAATGACGACTGGGGTAGTGGAATGGGAAATGAGAGGAGAGGGAGAGGGAGAGGAAGAGGAAGAGGGAAAGGGAGAGGAAGGGGAAGAAGGGATGACGATGGTGAGGGTTATGGAATGGAACACGGGAGGAGCGGAAGTGGGAGAGGATGGGGAAGAAGGGATGATGATGGTGGGGGTTCTGGAATGGAACACGGGAGGAGCGGAAGTGGGAGAGGATGGGGAAGAAGGGATGATGATAGTGGGGGTTCTGGAATGGAACACGGAAGGAGCGGAAGTGGGAGAGGAAGGGATGATGATAGTGGGGGTTATGGAATGGAACACGGAAGGAGCGGAAGTGGGAGAGGAAGGGATGATGATAGTGGGGGTTATGGAATGGAACACGGAAGGAGCGGAAGTGGGAGAGGAAGGGATGATGATAGTGGGGGTTATGGAATGGAACACGGAAGGAGCGGAAGTGGGAGAGGAAGGGGAAGGTGGAGCAGAGGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

566

Amino Acids

61.89

Weight (kDa)

9.06

Isoelectric Point (pI)

44.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RMI1_N_C PF08585 93 - 176 1.1e-17 RMI1, N-terminal OB-fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011849)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19950 AT5G19950 AT5G19950
fragaria_vesca FvH4_1g04220
malus_domestica MD00G1026600.v1.1 MD02G1038900.v1.1 MD02G1061400.v1.1
prunus_persica Prupe.7G235200_v2.0.a1
pyrus_communis pycom15g16270
rosa_chinensis RchiOBHm_Chr2g0089761
rosa_laevigata RLG00000016053
rosa_multiflora Rmu_sc0000665.1_g000010
rosa_roxburghii Rroxscaffold_2G00151640
rosa_rugosa Rorug02G0003000
rosa_samantha Rh2AG048200 Rh2BG047000 Rh2CG049100 Rh2DG048500
rosa_wichuraiana Rw2G004220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 797
AatII GACGTC 1 cut(s) 402
AccB1I GGYRCC 1 cut(s) 625
AccBSI CCGCTC 6 cut(s) 1341, 1410, 1479, 1539, 1599, 1659
AccII CGCG 1 cut(s) 553
AclWI GGATC 5 cut(s) 94, 100, 183, 686, 736
AcoI YGGCCR 2 cut(s) 120, 213
AcsI RAATTY 2 cut(s) 304, 974
AcuI CTGAAG 1 cut(s) 855
AcyI GRCGYC 2 cut(s) 30, 399
AfaI GTAC 2 cut(s) 65, 371
AfiI CCNNNNNNNGG 2 cut(s) 139, 172
AgsI TTSAA 8 cut(s) 325, 558, 573, 753, 881, 896, 963, 1115
AjnI CCWGG 2 cut(s) 423, 945
AjuI GAANNNNNNNTTGG 2 cut(s) 776, 808
AloI GAACNNNNNNTCC 2 cut(s) 483, 515
AluBI AGCT 8 cut(s) 12, 163, 257, 362, 437, 852, 884, 1043
AluI AGCT 8 cut(s) 12, 163, 257, 362, 437, 852, 884, 1043
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 2 cut(s) 261, 338
AlwI GGATC 5 cut(s) 94, 100, 183, 686, 736
AoxI GGCC 4 cut(s) 120, 213, 592, 863
ApeKI GCWGC 4 cut(s) 359, 687, 905, 908
ApoI RAATTY 2 cut(s) 304, 974
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 4 cut(s) 245, 418, 593, 1154
AsuC2I CCSGG 3 cut(s) 133, 212, 408
AsuHPI GGTGA 3 cut(s) 154, 362, 1322
AvaII GGWCC 3 cut(s) 245, 418, 1154
BaeGI GKGCMC 2 cut(s) 413, 628
BanI GGYRCC 1 cut(s) 625
BanII GRGCYC 1 cut(s) 165
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 4 cut(s) 371, 699, 917, 920
BccI CCATC 8 cut(s) 54, 335, 578, 730, 1301, 1350, 1370, 1419
BciT130I CCWGG 2 cut(s) 425, 947
BcnI CCSGG 3 cut(s) 133, 212, 408
BcoDI GTCTC 2 cut(s) 261, 338
BfaI CTAG 2 cut(s) 309, 846
BfmI CTRYAG 2 cut(s) 363, 1074
BfoI RGCGCY 1 cut(s) 21
BglII AGATCT 1 cut(s) 704
BisI GCNGC 8 cut(s) 33, 73, 317, 360, 688, 906, 909, 1109
BlsI GCNGC 8 cut(s) 34, 74, 318, 361, 689, 907, 910, 1110
BmcAI AGTACT 1 cut(s) 371
Bme1390I CCNGG 5 cut(s) 133, 212, 408, 425, 947
Bme18I GGWCC 3 cut(s) 245, 418, 1154
BmgT120I GGNCC 4 cut(s) 245, 418, 593, 1154
BmiI GGNNCC 4 cut(s) 193, 247, 627, 1155
BmrFI CCNGG 5 cut(s) 133, 212, 408, 425, 947
BmrI ACTGGG 1 cut(s) 1228
BmuI ACTGGG 1 cut(s) 1228
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 908
BpuMI CCSGG 3 cut(s) 133, 212, 408
BsaBI GATNNNNATC 2 cut(s) 104, 801
BsaHI GRCGYC 2 cut(s) 30, 399
BsaI GGTCTC 1 cut(s) 338
BsaJI CCNNGG 2 cut(s) 55, 644
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 172
Bse1I ACTGG 1 cut(s) 1223
Bse8I GATNNNNATC 2 cut(s) 104, 801
BseBI CCWGG 2 cut(s) 425, 947
BseDI CCNNGG 2 cut(s) 55, 644
BseJI GATNNNNATC 2 cut(s) 104, 801
BseLI CCNNNNNNNGG 2 cut(s) 139, 172
BseMII CTCAG 4 cut(s) 162, 349, 650, 702
BseNI ACTGG 1 cut(s) 1223
BseRI GAGGAG 6 cut(s) 155, 588, 911, 1258, 1351, 1420
BseSI GKGCMC 2 cut(s) 413, 628
BseXI GCAGC 4 cut(s) 371, 699, 917, 920
BseYI CCCAGC 1 cut(s) 1043
Bsh1236I CGCG 1 cut(s) 553
BshFI GGCC 4 cut(s) 122, 215, 594, 865
BshNI GGYRCC 1 cut(s) 625
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 4 cut(s) 15, 133, 212, 407
BslFI GGGAC 3 cut(s) 231, 490, 872
BslI CCNNNNNNNGG 2 cut(s) 139, 172
BsmAI GTCTC 2 cut(s) 261, 338
BsmFI GGGAC 3 cut(s) 231, 490, 872
BsmI GAATGC 1 cut(s) 958
BsnI GGCC 4 cut(s) 122, 215, 594, 865
Bso31I GGTCTC 1 cut(s) 338
Bsp1286I GDGCHC 3 cut(s) 165, 413, 628
Bsp143I GATC 6 cut(s) 99, 105, 175, 691, 704, 741
BspANI GGCC 4 cut(s) 122, 215, 594, 865
BspCNI CTCAG 4 cut(s) 161, 348, 649, 703
BspFNI CGCG 1 cut(s) 553
BspLI GGNNCC 4 cut(s) 193, 247, 627, 1155
BspMAI CTGCAG 1 cut(s) 1078
BspPI GGATC 5 cut(s) 94, 100, 183, 686, 736
BspT107I GGYRCC 1 cut(s) 625
BspTNI GGTCTC 1 cut(s) 338
BsrBI CCGCTC 6 cut(s) 1341, 1410, 1479, 1539, 1599, 1659
BsrI ACTGG 1 cut(s) 1223
BssECI CCNNGG 2 cut(s) 55, 644
BssMI GATC 6 cut(s) 99, 105, 175, 691, 704, 741
BssNI GRCGYC 2 cut(s) 30, 399
Bst2UI CCWGG 2 cut(s) 425, 947
Bst4CI ACNGT 2 cut(s) 139, 484
Bst6I CTCTTC 5 cut(s) 225, 831, 993, 1258, 1264
BstACI GRCGYC 2 cut(s) 30, 399
BstDEI CTNAG 8 cut(s) 47, 148, 335, 414, 563, 636, 681, 711
BstFNI CGCG 1 cut(s) 553
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 6 cut(s) 102, 108, 178, 694, 707, 744
BstMAI GTCTC 2 cut(s) 261, 338
BstMBI GATC 6 cut(s) 99, 105, 175, 691, 704, 741
BstMWI GCNNNNNNNGC 1 cut(s) 1073
BstNI CCWGG 2 cut(s) 425, 947
BstNSI RCATGY 1 cut(s) 1195
BstSCI CCNGG 5 cut(s) 131, 210, 406, 423, 945
BstSFI CTRYAG 2 cut(s) 363, 1074
BstSLI GKGCMC 2 cut(s) 413, 628
BstUI CGCG 1 cut(s) 553
BstV1I GCAGC 4 cut(s) 371, 699, 917, 920
BstX2I RGATCY 3 cut(s) 175, 704, 741
BstYI RGATCY 3 cut(s) 175, 704, 741
BsuRI GGCC 4 cut(s) 122, 215, 594, 865
BtgZI GCGATG 2 cut(s) 110, 597
BtsIMutI CAGTG 1 cut(s) 343
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 4 cut(s) 245, 418, 593, 1154
CseI GACGC 1 cut(s) 38
Csp6I GTAC 2 cut(s) 64, 370
CviAII CATG 4 cut(s) 172, 347, 1142, 1192
CviQI GTAC 2 cut(s) 64, 370
DdeI CTNAG 8 cut(s) 47, 148, 335, 414, 563, 636, 681, 711
DpnI GATC 6 cut(s) 101, 107, 177, 693, 706, 743
DpnII GATC 6 cut(s) 99, 105, 175, 691, 704, 741
DrdI GACNNNNNNGTC 1 cut(s) 797
DseDI GACNNNNNNGTC 1 cut(s) 797
EaeI YGGCCR 2 cut(s) 120, 213
Eam1104I CTCTTC 5 cut(s) 225, 831, 993, 1258, 1264
EarI CTCTTC 5 cut(s) 225, 831, 993, 1258, 1264
EciI GGCGGA 1 cut(s) 410
Ecl136II GAGCTC 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 338
Eco47I GGWCC 3 cut(s) 245, 418, 1154
Eco53kI GAGCTC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 855
EcoICRI GAGCTC 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 1154
EcoRI GAATTC 1 cut(s) 304
EcoRII CCWGG 2 cut(s) 423, 945
EcoT38I GRGCYC 1 cut(s) 165
FaeI CATG 4 cut(s) 175, 350, 1145, 1195
FaqI GGGAC 3 cut(s) 231, 490, 872
FatI CATG 4 cut(s) 171, 346, 1141, 1191
Fnu4HI GCNGC 8 cut(s) 33, 73, 317, 360, 688, 906, 909, 1109
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 8 cut(s) 33, 73, 317, 360, 688, 906, 909, 1109
FspBI CTAG 2 cut(s) 309, 846
GlaI GCGC 1 cut(s) 19
GluI GCNGC 8 cut(s) 33, 73, 317, 360, 688, 906, 909, 1109
GsaI CCCAGC 1 cut(s) 1047
GsuI CTGGAG 1 cut(s) 908
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 4 cut(s) 122, 215, 594, 865
HapII CCGG 4 cut(s) 15, 133, 212, 407
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 2 cut(s) 30, 399
Hin1II CATG 4 cut(s) 175, 350, 1145, 1195
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HincII GTYRAC 2 cut(s) 289, 676
HindII GTYRAC 2 cut(s) 289, 676
HinfI GANTC 6 cut(s) 155, 466, 815, 934, 1001, 1136
HpaI GTTAAC 1 cut(s) 676
HpaII CCGG 4 cut(s) 15, 133, 212, 407
HphI GGTGA 3 cut(s) 154, 362, 1322
Hpy166II GTNNAC 3 cut(s) 145, 289, 676
Hpy188I TCNGA 8 cut(s) 28, 160, 191, 394, 670, 704, 712, 1006
Hpy188III TCNNGA 8 cut(s) 103, 478, 726, 925, 963, 1088, 1389, 1458
Hpy8I GTNNAC 3 cut(s) 145, 289, 676
Hpy99I CGWCG 6 cut(s) 32, 128, 191, 398, 401, 404
HpyCH4III ACNGT 2 cut(s) 139, 484
HpyCH4IV ACGT 1 cut(s) 399
HpyCH4V TGCA 5 cut(s) 376, 616, 857, 1076, 1145
HpyF10VI GCNNNNNNNGC 1 cut(s) 1073
HpyF3I CTNAG 8 cut(s) 47, 148, 335, 414, 563, 636, 681, 711
HpySE526I ACGT 1 cut(s) 399
Hsp92I GRCGYC 2 cut(s) 30, 399
Hsp92II CATG 4 cut(s) 175, 350, 1145, 1195
HspAI GCGC 1 cut(s) 18
KspAI GTTAAC 1 cut(s) 676
Kzo9I GATC 6 cut(s) 99, 105, 175, 691, 704, 741
Lsp1109I GCAGC 4 cut(s) 371, 699, 917, 920
MaeI CTAG 2 cut(s) 309, 846
MaeII ACGT 1 cut(s) 399
MalI GATC 6 cut(s) 101, 107, 177, 693, 706, 743
MbiI CCGCTC 6 cut(s) 1341, 1410, 1479, 1539, 1599, 1659
MboI GATC 6 cut(s) 99, 105, 175, 691, 704, 741
MflI RGATCY 3 cut(s) 175, 704, 741
MhlI GDGCHC 3 cut(s) 165, 413, 628
MluCI AATT 3 cut(s) 304, 974, 1184
MlyI GAGTC 3 cut(s) 460, 943, 1010
MmeI TCCRAC 4 cut(s) 51, 169, 417, 984
MseI TTAA 4 cut(s) 675, 822, 1182, 1197
MslI CAYNNNNRTG 1 cut(s) 1089
MspI CCGG 4 cut(s) 15, 133, 212, 407
MspR9I CCNGG 5 cut(s) 133, 212, 408, 425, 947
Mva1269I GAATGC 1 cut(s) 958
MvaI CCWGG 2 cut(s) 425, 947
MvnI CGCG 1 cut(s) 553
MwoI GCNNNNNNNGC 1 cut(s) 1073
NciI CCSGG 3 cut(s) 133, 212, 408
NdeII GATC 6 cut(s) 99, 105, 175, 691, 704, 741
NlaIII CATG 4 cut(s) 175, 350, 1145, 1195
NlaIV GGNNCC 4 cut(s) 193, 247, 627, 1155
NmeAIII GCCGAG 2 cut(s) 80, 625
NspI RCATGY 1 cut(s) 1195
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PctI GAATGC 1 cut(s) 958
PfeI GAWTC 3 cut(s) 155, 815, 1136
PflFI GACNNNGTC 1 cut(s) 398
PkrI GCNGC 8 cut(s) 34, 74, 318, 361, 689, 907, 910, 1110
PleI GAGTC 3 cut(s) 460, 942, 1009
PpsI GAGTC 3 cut(s) 460, 942, 1009
PpuMI RGGWCCY 1 cut(s) 1154
Psp124BI GAGCTC 1 cut(s) 165
Psp5II RGGWCCY 1 cut(s) 1154
Psp6I CCWGG 2 cut(s) 423, 945
PspFI CCCAGC 1 cut(s) 1043
PspGI CCWGG 2 cut(s) 423, 945
PspN4I GGNNCC 4 cut(s) 193, 247, 627, 1155
PspPI GGNCC 4 cut(s) 245, 418, 593, 1154
PspPPI RGGWCCY 1 cut(s) 1154
PstI CTGCAG 1 cut(s) 1078
PsuI RGATCY 3 cut(s) 175, 704, 741
PsyI GACNNNGTC 1 cut(s) 398
RsaI GTAC 2 cut(s) 65, 371
RsaNI GTAC 2 cut(s) 64, 370
RseI CAYNNNNRTG 1 cut(s) 1089
SacI GAGCTC 1 cut(s) 165
SaqAI TTAA 4 cut(s) 675, 822, 1182, 1197
SatI GCNGC 8 cut(s) 33, 73, 317, 360, 688, 906, 909, 1109
Sau3AI GATC 6 cut(s) 99, 105, 175, 691, 704, 741
Sau96I GGNCC 4 cut(s) 245, 418, 593, 1154
ScaI AGTACT 1 cut(s) 371
SchI GAGTC 3 cut(s) 460, 943, 1010
ScrFI CCNGG 5 cut(s) 133, 212, 408, 425, 947
SduI GDGCHC 3 cut(s) 165, 413, 628
SfcI CTRYAG 2 cut(s) 363, 1074
SinI GGWCC 3 cut(s) 245, 418, 1154
SmiMI CAYNNNNRTG 1 cut(s) 1089
Sse9I AATT 3 cut(s) 304, 974, 1184
SspI AATATT 1 cut(s) 539
SspMI CTAG 2 cut(s) 309, 846
SstI GAGCTC 1 cut(s) 165
StyD4I CCNGG 5 cut(s) 131, 210, 406, 423, 945
TaaI ACNGT 2 cut(s) 139, 484
TaiI ACGT 1 cut(s) 402
TaqI TCGA 2 cut(s) 39, 153
TaqII GACCGA 1 cut(s) 233
TasI AATT 3 cut(s) 304, 974, 1184
TatI WGTACW 1 cut(s) 369
TauI GCSGC 4 cut(s) 35, 75, 319, 1111
TfiI GAWTC 3 cut(s) 155, 815, 1136
Tru1I TTAA 4 cut(s) 675, 822, 1182, 1197
Tru9I TTAA 4 cut(s) 675, 822, 1182, 1197
TscAI CASTG 1 cut(s) 343
TseI GCWGC 4 cut(s) 359, 687, 905, 908
TspDTI ATGAA 5 cut(s) 375, 528, 542, 840, 1073
TspGWI ACGGA 6 cut(s) 175, 827, 1485, 1545, 1605, 1665
TspRI CASTG 1 cut(s) 343
Tth111I GACNNNGTC 1 cut(s) 398
VpaK11BI GGWCC 3 cut(s) 245, 418, 1154
XapI RAATTY 2 cut(s) 304, 974
XceI RCATGY 1 cut(s) 1195
XspI CTAG 2 cut(s) 309, 846
ZraI GACGTC 1 cut(s) 400
ZrmI AGTACT 1 cut(s) 371
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.