RLG00000016053

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0011849
Physical Location & Seq
Forward (+)
3513791 .. 3516318
2528 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016053

Sequence Viewer

Length: 1512 bp
ATGGAGGAAAGCTCCGGCGCTCTCTCCGACGCCGCAATCGAAACCCTAAGAAGCCGAGGATGGTGCTTCGGCGGCGACTTGGAGCAAGTCCAAGCGATGATCCTGATCCACTCCGCTTTGGCCGACGACACCCGCACGGTGGTGAACTCAGTCGAATCGGAGCTCCTCAACATGGACCTCAAATCCATCGGATCCAAGTCGTTACCCGACCCGGTCACTCTTCGCAAGTCATCTCATCTTCTCGGTCCCAAAGTTCTCCAGATAGCTTGGGTTAGAGACATTACGAGTAGTAATGTTGACGATTTTGCGAGGAATTCTAGTCGGCGGCTTTTGAAACTTGGTCTTAGTGATGGACATGGTGAGGTAGCAGCTATAGAGTACTTGCATATCCCTTCATTCTCCGACGACGTCGTTCCGGGCACTAAGGTCCGCCTGGAAAATAAAGCTATTATACGAAATGGGATAGTATGTTTGACTCCTAAAGTCTTGACCGTGTTAGGAGGTGTTGTTCAGTCCCTTTATGAAGAATGGCAGATGAATAAAAAATATTCAGGTTTTTCGCGTTCAACTTTAAGGCTTTCAAAGGAAAGTGATGGTGATGGCCCTCCTCCATTTGAGAAGTTGCAAGTTGGGGCACCCAAAACTCAGGTTCCTCGGCAGGACAAGTCTTATCAGTCTGATGTTAACACTAAGAGCAGCGATCCTACTTTCAGATCTTCTGAGATAAGACCATCTGGAAAGCAACAGCAGAACCTTCATTCAAAGTCAAATGGTATTGATAACCCTAATAAGAAAAATGACATGGATGTCAATCTAAAGACGGATTCTGTTAATGAAAGAACTGAAGAGAAACCTAGTAGCTCTGCAACAAGGCCAAAAGAAGTTGTTGAAGCTGTCCCTGTTCAAAACCAAGCAGCAGCACAGAAACTCCTCCAGAAAATGAGTCATCAAAACCAGGATAGTAGGCATTCAAGAGGTAGAAAATTTAGAGGCAAGGGTTGGGAGGAAGAGTCAGAGGTATTCACTTTGGAAGAATGGGAACAGAGGAAAGCTGGGGCAAAGCCTTCCATAACCGCCACTTCTGCAGTTGTTCATCGTGATGAGGAACTTGCTTGGCAGCTTCAAAATCAGTTTGATTTAGAAGATTCTCATGCACAAATGGGTCCTCAAAATGTGGAGGCAGAGGATATTAAATTGAGCATGTTTAACTATGAGAAGAATGACGACTGGGGTAGTGGAATGGGAAATGAGAGGAGAGGGAGAGGGAGAGGGAGAGGAAGAGGGAGAGGGAGAGGATGGGAAGATGAAGACAGTGGTTACGAAATGGAACATGAAAGGAGTGGAAGAGGGAGGGAAGATGACGACGGTGGTTATGGAATGGAACACGGAAGGAGCGGAAGAGGGAGAGGATCGGGAAGAAGGGATGATGGTGGTGGGGGTTATGGAATGGAACACGGAAGGAGCAGAAGTGGGAGAGGAAGGGGAAGGGGAAGGGGGAGTAGAGGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

504

Amino Acids

55.76

Weight (kDa)

7.79

Isoelectric Point (pI)

47.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RMI1_N_C PF08585 103 - 179 1.3e-17 RMI1, N-terminal OB-fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011849)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19950 AT5G19950 AT5G19950
fragaria_vesca FvH4_1g04220
malus_domestica MD00G1026600.v1.1 MD02G1038900.v1.1 MD02G1061400.v1.1
prunus_persica Prupe.7G235200_v2.0.a1
pyrus_communis pycom15g16270
rosa_chinensis RchiOBHm_Chr2g0089761
rosa_laevigata RLG00000016053
rosa_multiflora Rmu_sc0000665.1_g000010
rosa_roxburghii Rroxscaffold_2G00151640
rosa_rugosa Rorug02G0003000
rosa_samantha Rh2AG048200 Rh2BG047000 Rh2CG049100 Rh2DG048500
rosa_wichuraiana Rw2G004220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 806
AatII GACGTC 1 cut(s) 411
AccB1I GGYRCC 1 cut(s) 634
AccBSI CCGCTC 1 cut(s) 1395
AccII CGCG 1 cut(s) 562
AciI CCGC 8 cut(s) 33, 72, 114, 133, 325, 430, 1074, 1395
AclWI GGATC 6 cut(s) 94, 100, 186, 199, 695, 1417
AcoI YGGCCR 1 cut(s) 120
AcsI RAATTY 2 cut(s) 313, 983
AcuI CTGAAG 1 cut(s) 864
AcyI GRCGYC 2 cut(s) 30, 408
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 2 cut(s) 139, 172
AgsI TTSAA 8 cut(s) 334, 567, 582, 762, 890, 905, 972, 1124
AjnI CCWGG 2 cut(s) 432, 954
AleI CACNNNNGTG 1 cut(s) 140
AloI GAACNNNNNNTCC 2 cut(s) 492, 524
AluBI AGCT 9 cut(s) 12, 163, 266, 371, 446, 861, 893, 1052, 1120
AluI AGCT 9 cut(s) 12, 163, 266, 371, 446, 861, 893, 1052, 1120
Alw21I GWGCWC 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 270
AlwI GGATC 6 cut(s) 94, 100, 186, 199, 695, 1417
AoxI GGCC 3 cut(s) 120, 601, 872
ApeKI GCWGC 5 cut(s) 368, 696, 914, 917, 1117
ApoI RAATTY 2 cut(s) 313, 983
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 5 cut(s) 175, 245, 427, 602, 1163
AsuC2I CCSGG 2 cut(s) 212, 417
AsuHPI GGTGA 3 cut(s) 154, 371, 608
AvaII GGWCC 4 cut(s) 175, 245, 427, 1163
BaeGI GKGCMC 2 cut(s) 422, 637
BamHI GGATCC 1 cut(s) 191
BanI GGYRCC 1 cut(s) 634
BanII GRGCYC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 1314
Bbv12I GWGCWC 1 cut(s) 165
BbvI GCAGC 5 cut(s) 380, 708, 926, 929, 1129
BccI CCATC 8 cut(s) 54, 194, 344, 587, 593, 739, 1290, 1421
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BciT130I CCWGG 2 cut(s) 434, 956
BcnI CCSGG 2 cut(s) 212, 417
BcoDI GTCTC 1 cut(s) 270
BfaI CTAG 2 cut(s) 318, 855
BfmI CTRYAG 2 cut(s) 372, 1083
BfoI RGCGCY 1 cut(s) 21
BglII AGATCT 1 cut(s) 713
BisI GCNGC 8 cut(s) 33, 73, 326, 369, 697, 915, 918, 1118
BlsI GCNGC 8 cut(s) 34, 74, 327, 370, 698, 916, 919, 1119
BmcAI AGTACT 1 cut(s) 380
Bme1390I CCNGG 4 cut(s) 212, 417, 434, 956
Bme18I GGWCC 4 cut(s) 175, 245, 427, 1163
BmgT120I GGNCC 5 cut(s) 175, 245, 427, 602, 1163
BmiI GGNNCC 5 cut(s) 193, 247, 636, 651, 1164
BmrFI CCNGG 4 cut(s) 212, 417, 434, 956
BmrI ACTGGG 1 cut(s) 1237
BmuI ACTGGG 1 cut(s) 1237
BpiI GAAGAC 1 cut(s) 1314
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 2 cut(s) 242, 917
BpuMI CCSGG 2 cut(s) 212, 417
BsaBI GATNNNNATC 2 cut(s) 104, 810
BsaHI GRCGYC 2 cut(s) 30, 408
BsaJI CCNNGG 2 cut(s) 55, 653
BsaXI ACNNNNNCTCC 8 cut(s) 492, 522, 912, 942, 995, 1025, 1453, 1483
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 172
Bse1I ACTGG 1 cut(s) 1232
Bse8I GATNNNNATC 2 cut(s) 104, 810
BseBI CCWGG 2 cut(s) 434, 956
BseDI CCNNGG 2 cut(s) 55, 653
BseGI GGATG 4 cut(s) 65, 811, 1301, 1429
BseJI GATNNNNATC 2 cut(s) 104, 810
BseLI CCNNNNNNNGG 2 cut(s) 139, 172
BseMII CTCAG 3 cut(s) 162, 659, 711
BseNI ACTGG 1 cut(s) 1232
BseRI GAGGAG 4 cut(s) 155, 597, 920, 1267
BseSI GKGCMC 2 cut(s) 422, 637
BseXI GCAGC 5 cut(s) 380, 708, 926, 929, 1129
BseYI CCCAGC 1 cut(s) 1052
Bsh1236I CGCG 1 cut(s) 562
BshFI GGCC 3 cut(s) 122, 603, 874
BshNI GGYRCC 1 cut(s) 634
BsiHKAI GWGCWC 1 cut(s) 165
BsiSI CCGG 3 cut(s) 15, 212, 416
BslFI GGGAC 3 cut(s) 231, 499, 881
BslI CCNNNNNNNGG 2 cut(s) 139, 172
BsmAI GTCTC 1 cut(s) 270
BsmFI GGGAC 3 cut(s) 231, 499, 881
BsmI GAATGC 1 cut(s) 967
BsnI GGCC 3 cut(s) 122, 603, 874
Bsp1286I GDGCHC 3 cut(s) 165, 422, 637
Bsp143I GATC 6 cut(s) 99, 105, 191, 700, 713, 1409
BspACI CCGC 8 cut(s) 33, 72, 114, 133, 325, 430, 1074, 1395
BspANI GGCC 3 cut(s) 122, 603, 874
BspCNI CTCAG 3 cut(s) 161, 658, 712
BspFNI CGCG 1 cut(s) 562
BspLI GGNNCC 5 cut(s) 193, 247, 636, 651, 1164
BspMAI CTGCAG 1 cut(s) 1087
BspPI GGATC 6 cut(s) 94, 100, 186, 199, 695, 1417
BspT107I GGYRCC 1 cut(s) 634
BsrBI CCGCTC 1 cut(s) 1395
BsrI ACTGG 1 cut(s) 1232
BssECI CCNNGG 2 cut(s) 55, 653
BssMI GATC 6 cut(s) 99, 105, 191, 700, 713, 1409
BssNI GRCGYC 2 cut(s) 30, 408
Bst2UI CCWGG 2 cut(s) 434, 956
Bst4CI ACNGT 4 cut(s) 139, 493, 1313, 1367
Bst6I CTCTTC 6 cut(s) 225, 840, 1002, 1273, 1339, 1393
BstACI GRCGYC 2 cut(s) 30, 408
BstDEI CTNAG 7 cut(s) 47, 148, 344, 423, 645, 690, 720
BstF5I GGATG 4 cut(s) 65, 811, 1301, 1429
BstFNI CGCG 1 cut(s) 562
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 6 cut(s) 102, 108, 194, 703, 716, 1412
BstMAI GTCTC 1 cut(s) 270
BstMBI GATC 6 cut(s) 99, 105, 191, 700, 713, 1409
BstMWI GCNNNNNNNGC 2 cut(s) 72, 1082
BstNI CCWGG 2 cut(s) 434, 956
BstNSI RCATGY 1 cut(s) 1204
BstSCI CCNGG 4 cut(s) 210, 415, 432, 954
BstSFI CTRYAG 2 cut(s) 372, 1083
BstSLI GKGCMC 2 cut(s) 422, 637
BstUI CGCG 1 cut(s) 562
BstV1I GCAGC 5 cut(s) 380, 708, 926, 929, 1129
BstV2I GAAGAC 1 cut(s) 1314
BstX2I RGATCY 2 cut(s) 191, 713
BstYI RGATCY 2 cut(s) 191, 713
BsuRI GGCC 3 cut(s) 122, 603, 874
BtgZI GCGATG 1 cut(s) 110
BtsCI GGATG 4 cut(s) 65, 811, 1301, 1429
BtsIMutI CAGTG 1 cut(s) 1318
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 5 cut(s) 175, 245, 427, 602, 1163
CseI GACGC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 379
CviAII CATG 6 cut(s) 172, 356, 802, 1151, 1201, 1331
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 7 cut(s) 47, 148, 344, 423, 645, 690, 720
DpnI GATC 6 cut(s) 101, 107, 193, 702, 715, 1411
DpnII GATC 6 cut(s) 99, 105, 191, 700, 713, 1409
DrdI GACNNNNNNGTC 1 cut(s) 806
DseDI GACNNNNNNGTC 1 cut(s) 806
EaeI YGGCCR 1 cut(s) 120
Eam1104I CTCTTC 6 cut(s) 225, 840, 1002, 1273, 1339, 1393
EarI CTCTTC 6 cut(s) 225, 840, 1002, 1273, 1339, 1393
EciI GGCGGA 1 cut(s) 419
Ecl136II GAGCTC 1 cut(s) 163
Eco24I GRGCYC 1 cut(s) 165
Eco47I GGWCC 4 cut(s) 175, 245, 427, 1163
Eco53kI GAGCTC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 864
EcoICRI GAGCTC 1 cut(s) 163
EcoO109I RGGNCCY 1 cut(s) 1163
EcoRI GAATTC 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 432, 954
EcoT38I GRGCYC 1 cut(s) 165
FaeI CATG 6 cut(s) 175, 359, 805, 1154, 1204, 1334
FaqI GGGAC 3 cut(s) 231, 499, 881
FatI CATG 6 cut(s) 171, 355, 801, 1150, 1200, 1330
FauI CCCGC 1 cut(s) 140
Fnu4HI GCNGC 8 cut(s) 33, 73, 326, 369, 697, 915, 918, 1118
FokI GGATG 4 cut(s) 72, 818, 1308, 1436
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 8 cut(s) 33, 73, 326, 369, 697, 915, 918, 1118
FspBI CTAG 2 cut(s) 318, 855
GlaI GCGC 1 cut(s) 19
GluI GCNGC 8 cut(s) 33, 73, 326, 369, 697, 915, 918, 1118
GsaI CCCAGC 1 cut(s) 1056
GsuI CTGGAG 2 cut(s) 242, 917
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 3 cut(s) 122, 603, 874
HapII CCGG 3 cut(s) 15, 212, 416
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 2 cut(s) 30, 408
Hin1II CATG 6 cut(s) 175, 359, 805, 1154, 1204, 1334
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HincII GTYRAC 2 cut(s) 298, 685
HindII GTYRAC 2 cut(s) 298, 685
HinfI GANTC 6 cut(s) 155, 475, 824, 943, 1010, 1145
HpaI GTTAAC 1 cut(s) 685
HpaII CCGG 3 cut(s) 15, 212, 416
HphI GGTGA 3 cut(s) 154, 371, 608
Hpy166II GTNNAC 3 cut(s) 145, 298, 685
Hpy188I TCNGA 8 cut(s) 28, 160, 191, 403, 679, 713, 721, 1015
Hpy188III TCNNGA 8 cut(s) 103, 259, 487, 735, 934, 972, 1097, 1413
Hpy8I GTNNAC 3 cut(s) 145, 298, 685
Hpy99I CGWCG 6 cut(s) 32, 128, 407, 410, 413, 1367
HpyAV CCTTC 9 cut(s) 402, 764, 1074, 1383, 1413, 1452, 1473, 1479, 1485
HpyCH4III ACNGT 4 cut(s) 139, 493, 1313, 1367
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 5 cut(s) 385, 625, 866, 1085, 1154
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 1082
HpyF3I CTNAG 7 cut(s) 47, 148, 344, 423, 645, 690, 720
HpySE526I ACGT 1 cut(s) 408
Hsp92I GRCGYC 2 cut(s) 30, 408
Hsp92II CATG 6 cut(s) 175, 359, 805, 1154, 1204, 1334
HspAI GCGC 1 cut(s) 18
KspAI GTTAAC 1 cut(s) 685
Kzo9I GATC 6 cut(s) 99, 105, 191, 700, 713, 1409
LmnI GCTCC 6 cut(s) 17, 82, 160, 168, 1392, 1461
Lsp1109I GCAGC 5 cut(s) 380, 708, 926, 929, 1129
MaeI CTAG 2 cut(s) 318, 855
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 3 cut(s) 201, 214, 1316
MalI GATC 6 cut(s) 101, 107, 193, 702, 715, 1411
MbiI CCGCTC 1 cut(s) 1395
MboI GATC 6 cut(s) 99, 105, 191, 700, 713, 1409
MflI RGATCY 2 cut(s) 191, 713
MhlI GDGCHC 3 cut(s) 165, 422, 637
MluCI AATT 3 cut(s) 313, 983, 1193
MlyI GAGTC 3 cut(s) 469, 952, 1019
MmeI TCCRAC 2 cut(s) 51, 426
MseI TTAA 5 cut(s) 572, 684, 831, 1191, 1206
MslI CAYNNNNRTG 2 cut(s) 140, 1098
MspI CCGG 3 cut(s) 15, 212, 416
MspR9I CCNGG 4 cut(s) 212, 417, 434, 956
Mva1269I GAATGC 1 cut(s) 967
MvaI CCWGG 2 cut(s) 434, 956
MvnI CGCG 1 cut(s) 562
MwoI GCNNNNNNNGC 2 cut(s) 72, 1082
NciI CCSGG 2 cut(s) 212, 417
NdeII GATC 6 cut(s) 99, 105, 191, 700, 713, 1409
NlaIII CATG 6 cut(s) 175, 359, 805, 1154, 1204, 1334
NlaIV GGNNCC 5 cut(s) 193, 247, 636, 651, 1164
NmeAIII GCCGAG 2 cut(s) 80, 634
NmuCI GTSAC 1 cut(s) 214
NspI RCATGY 1 cut(s) 1204
OliI CACNNNNGTG 1 cut(s) 140
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PctI GAATGC 1 cut(s) 967
PfeI GAWTC 3 cut(s) 155, 824, 1145
PflFI GACNNNGTC 2 cut(s) 212, 407
PkrI GCNGC 8 cut(s) 34, 74, 327, 370, 698, 916, 919, 1119
PleI GAGTC 3 cut(s) 469, 951, 1018
PpsI GAGTC 3 cut(s) 469, 951, 1018
PpuMI RGGWCCY 1 cut(s) 1163
Psp124BI GAGCTC 1 cut(s) 165
Psp5II RGGWCCY 1 cut(s) 1163
Psp6I CCWGG 2 cut(s) 432, 954
PspFI CCCAGC 1 cut(s) 1052
PspGI CCWGG 2 cut(s) 432, 954
PspN4I GGNNCC 5 cut(s) 193, 247, 636, 651, 1164
PspPI GGNCC 5 cut(s) 175, 245, 427, 602, 1163
PspPPI RGGWCCY 1 cut(s) 1163
PstI CTGCAG 1 cut(s) 1087
PsuI RGATCY 2 cut(s) 191, 713
PsyI GACNNNGTC 2 cut(s) 212, 407
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
RseI CAYNNNNRTG 2 cut(s) 140, 1098
SacI GAGCTC 1 cut(s) 165
SaqAI TTAA 5 cut(s) 572, 684, 831, 1191, 1206
SatI GCNGC 8 cut(s) 33, 73, 326, 369, 697, 915, 918, 1118
Sau3AI GATC 6 cut(s) 99, 105, 191, 700, 713, 1409
Sau96I GGNCC 5 cut(s) 175, 245, 427, 602, 1163
ScaI AGTACT 1 cut(s) 380
SchI GAGTC 3 cut(s) 469, 952, 1019
ScrFI CCNGG 4 cut(s) 212, 417, 434, 956
SduI GDGCHC 3 cut(s) 165, 422, 637
SfcI CTRYAG 2 cut(s) 372, 1083
SinI GGWCC 4 cut(s) 175, 245, 427, 1163
SmiMI CAYNNNNRTG 2 cut(s) 140, 1098
Sse9I AATT 3 cut(s) 313, 983, 1193
SsiI CCGC 8 cut(s) 33, 72, 114, 133, 325, 430, 1074, 1395
SspI AATATT 1 cut(s) 548
SspMI CTAG 2 cut(s) 318, 855
SstI GAGCTC 1 cut(s) 165
StyD4I CCNGG 4 cut(s) 210, 415, 432, 954
TaaI ACNGT 4 cut(s) 139, 493, 1313, 1367
TaiI ACGT 1 cut(s) 411
TaqI TCGA 2 cut(s) 39, 153
TaqII GACCGA 1 cut(s) 233
TasI AATT 3 cut(s) 313, 983, 1193
TatI WGTACW 1 cut(s) 378
TauI GCSGC 3 cut(s) 35, 75, 328
TfiI GAWTC 3 cut(s) 155, 824, 1145
Tru1I TTAA 5 cut(s) 572, 684, 831, 1191, 1206
Tru9I TTAA 5 cut(s) 572, 684, 831, 1191, 1206
TscAI CASTG 1 cut(s) 1318
TseFI GTSAC 1 cut(s) 214
TseI GCWGC 5 cut(s) 368, 696, 914, 917, 1117
Tsp45I GTSAC 1 cut(s) 214
TspDTI ATGAA 8 cut(s) 384, 537, 551, 746, 849, 1082, 1320, 1347
TspGWI ACGGA 3 cut(s) 836, 1401, 1470
TspRI CASTG 1 cut(s) 1318
Tth111I GACNNNGTC 2 cut(s) 212, 407
VpaK11BI GGWCC 4 cut(s) 175, 245, 427, 1163
XapI RAATTY 2 cut(s) 313, 983
XceI RCATGY 1 cut(s) 1204
XspI CTAG 2 cut(s) 318, 855
ZraI GACGTC 1 cut(s) 409
ZrmI AGTACT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.