Rh2BG047000

Tudor domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0011849
Physical Location & Seq
Forward (+)
3334391 .. 3337310
2920 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG047000.1

Sequence Viewer

Length: 1227 bp
ATGGAGGAAAGCTCCGGCGCTCTCTCCGACGCCGCAATCGAAACCCTAAGAAGCCGAGGATGGTGCTTCGGCGGCGACTTGGAGCAAGTCCAAGCGATGATCCTGATCCACTCCGCCTTGGCCGACGACACCCGGACGGTGGTGAACTCAGTCGAATCGGAGCTGCTCAACATGGATCTCAAATCCGTCGGAGCCAAGTCGTTGCCCGACCCGGCCACTCTTCGCAAGTCATCTCATCTTGTCGGTCCCAAAGTTCTCCAGATAGCTTGGGTTAGAGACATTACGAGTAGTAATGTTGACGATTTTGCGAGGAATTCTAGTCGGCGGCTTTTGAAACTTGGTCTCAGTGATGGACATGGTGAGGTAGCAGCTATAGAGTACTTGCATATCCCTTCATTCTCCGACGACGTCGTTCCGGGAAGTAAGGTCCGCCTGGAAAATAAAGCTATTATACGAAATGGGATAGTATGTTTGACTCCTAAAGTCTTGACCGTGTTAGGAGGTGTTGTTCAGTCCCTTTATGAAGAATGGCAGATGAATAAAAAATATTCAGGTTTTTCGCGTTCAACTTTAAGGCTTTCAAAGGAAAGCGATGGTAATGGCCCTCCTCCATTTGAGAAGTTGCAAGTTGGGGCACCCAAAACTCAGTTTCCTCGGCAGGACAAGTCTTATCAGTCTGATGTTAACACTAAGAGCAGCGATCCTACTATCAGATCTTCTGAGATAAGACCATCTGGAAAGCAACAGCAGATCCTTCTTTCAAAGTCAAATGGTATTGATAACCCTAATAAGAAAAATGACTTGGATGTCAATCTAAAGACGGATTCTGTTAATGAAAGAACTGAAGAGAAACCTAGTAGCTCTGCAACAAGGCCAAAAGAAGTTGTTGAAGCTGTCCCTGTTCAAAACCAAGCAGCAGCACAGAAACTCCTCCAGAAAATGAGTCATCAAAACCAGGATAGTAGGCATTCAAGAGGTAGAAAATTTAGAGGCAAGGGTAGGGAGGAAGAGTCGGAGGTATTCACTTTGGAAGAATGGGAAAAGAGGAAAGCTGGGGCAAAGCCTTCCATAACCGCCACTTCTGCAGTTGTTCATCGTGATGAGGAACTTGCTTGGCAGCTTCAAAATCAGTTTGATTTAGAAGATTCTCATGTTAGTTTTCTCGCACCATTGAGTCTCATTTTGTTATTGTTCTTCTTGTTGTCTTCCAAGGTTTTGAACTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RMI1_N

Protein Analysis

408

Amino Acids

45.22

Weight (kDa)

7.75

Isoelectric Point (pI)

50.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RMI1_N_C PF08585 103 - 179 1.6e-17 RMI1, N-terminal OB-fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011849)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19950 AT5G19950 AT5G19950
fragaria_vesca FvH4_1g04220
malus_domestica MD00G1026600.v1.1 MD02G1038900.v1.1 MD02G1061400.v1.1
prunus_persica Prupe.7G235200_v2.0.a1
pyrus_communis pycom15g16270
rosa_chinensis RchiOBHm_Chr2g0089761
rosa_laevigata RLG00000016053
rosa_multiflora Rmu_sc0000665.1_g000010
rosa_roxburghii Rroxscaffold_2G00151640
rosa_rugosa Rorug02G0003000
rosa_samantha Rh2AG048200 Rh2BG047000 Rh2CG049100 Rh2DG048500
rosa_wichuraiana Rw2G004220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 806
AatII GACGTC 1 cut(s) 411
AccB1I GGYRCC 1 cut(s) 634
AccII CGCG 1 cut(s) 562
AciI CCGC 6 cut(s) 33, 72, 114, 325, 430, 1074
AclWI GGATC 5 cut(s) 94, 100, 183, 695, 745
AcoI YGGCCR 2 cut(s) 120, 213
AcsI RAATTY 2 cut(s) 313, 983
AcuI CTGAAG 1 cut(s) 864
AcyI GRCGYC 2 cut(s) 30, 408
AfaI GTAC 1 cut(s) 380
AfiI CCNNNNNNNGG 1 cut(s) 139
AgsI TTSAA 9 cut(s) 334, 567, 582, 762, 890, 905, 972, 1124, 1219
AjnI CCWGG 2 cut(s) 432, 954
AjuI GAANNNNNNNTTGG 2 cut(s) 785, 817
AloI GAACNNNNNNTCC 2 cut(s) 492, 524
AluBI AGCT 9 cut(s) 12, 163, 266, 371, 446, 861, 893, 1052, 1120
AluI AGCT 9 cut(s) 12, 163, 266, 371, 446, 861, 893, 1052, 1120
Alw26I GTCTC 3 cut(s) 270, 347, 1181
AlwI GGATC 5 cut(s) 94, 100, 183, 695, 745
AoxI GGCC 4 cut(s) 120, 213, 601, 872
ApeKI GCWGC 6 cut(s) 163, 368, 696, 914, 917, 1117
ApoI RAATTY 2 cut(s) 313, 983
AspLEI GCGC 1 cut(s) 20
AspS9I GGNCC 3 cut(s) 245, 427, 602
AsuC2I CCSGG 3 cut(s) 133, 212, 417
AsuHPI GGTGA 2 cut(s) 154, 371
AvaII GGWCC 2 cut(s) 245, 427
BaeGI GKGCMC 1 cut(s) 637
BanI GGYRCC 1 cut(s) 634
BbsI GAAGAC 1 cut(s) 1197
BbvI GCAGC 6 cut(s) 150, 380, 708, 926, 929, 1129
BccI CCATC 4 cut(s) 54, 344, 587, 739
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BciT130I CCWGG 2 cut(s) 434, 956
BcnI CCSGG 3 cut(s) 133, 212, 417
BcoDI GTCTC 3 cut(s) 270, 347, 1181
BfaI CTAG 2 cut(s) 318, 855
BfmI CTRYAG 2 cut(s) 372, 1083
BfoI RGCGCY 1 cut(s) 21
BglII AGATCT 1 cut(s) 713
BisI GCNGC 9 cut(s) 33, 73, 164, 326, 369, 697, 915, 918, 1118
BlsI GCNGC 9 cut(s) 34, 74, 165, 327, 370, 698, 916, 919, 1119
BmcAI AGTACT 1 cut(s) 380
Bme1390I CCNGG 5 cut(s) 133, 212, 417, 434, 956
Bme18I GGWCC 2 cut(s) 245, 427
BmgT120I GGNCC 3 cut(s) 245, 427, 602
BmiI GGNNCC 3 cut(s) 193, 247, 636
BmrFI CCNGG 5 cut(s) 133, 212, 417, 434, 956
BpiI GAAGAC 1 cut(s) 1197
BplI GAGNNNNNCTC 1 cut(s) 28
BpmI CTGGAG 2 cut(s) 242, 917
BpuMI CCSGG 3 cut(s) 133, 212, 417
BsaBI GATNNNNATC 2 cut(s) 104, 810
BsaHI GRCGYC 2 cut(s) 30, 408
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 4 cut(s) 55, 117, 653, 1209
BsaXI ACNNNNNCTCC 6 cut(s) 492, 522, 912, 942, 995, 1025
Bsc4I CCNNNNNNNGG 1 cut(s) 139
Bse8I GATNNNNATC 2 cut(s) 104, 810
BseBI CCWGG 2 cut(s) 434, 956
BseDI CCNNGG 4 cut(s) 55, 117, 653, 1209
BseGI GGATG 2 cut(s) 65, 811
BseJI GATNNNNATC 2 cut(s) 104, 810
BseLI CCNNNNNNNGG 1 cut(s) 139
BseMII CTCAG 4 cut(s) 162, 358, 659, 711
BseRI GAGGAG 2 cut(s) 597, 920
BseSI GKGCMC 1 cut(s) 637
BseXI GCAGC 6 cut(s) 150, 380, 708, 926, 929, 1129
BseYI CCCAGC 1 cut(s) 1052
Bsh1236I CGCG 1 cut(s) 562
BshFI GGCC 4 cut(s) 122, 215, 603, 874
BshNI GGYRCC 1 cut(s) 634
BsiSI CCGG 4 cut(s) 15, 133, 212, 416
BslFI GGGAC 3 cut(s) 231, 499, 881
BslI CCNNNNNNNGG 1 cut(s) 139
BsmAI GTCTC 3 cut(s) 270, 347, 1181
BsmFI GGGAC 3 cut(s) 231, 499, 881
BsmI GAATGC 1 cut(s) 967
BsnI GGCC 4 cut(s) 122, 215, 603, 874
Bso31I GGTCTC 1 cut(s) 347
Bsp1286I GDGCHC 1 cut(s) 637
Bsp143I GATC 6 cut(s) 99, 105, 175, 700, 713, 750
BspACI CCGC 6 cut(s) 33, 72, 114, 325, 430, 1074
BspANI GGCC 4 cut(s) 122, 215, 603, 874
BspCNI CTCAG 4 cut(s) 161, 357, 658, 712
BspFNI CGCG 1 cut(s) 562
BspLI GGNNCC 3 cut(s) 193, 247, 636
BspMAI CTGCAG 1 cut(s) 1087
BspPI GGATC 5 cut(s) 94, 100, 183, 695, 745
BspT107I GGYRCC 1 cut(s) 634
BspTNI GGTCTC 1 cut(s) 347
BssECI CCNNGG 4 cut(s) 55, 117, 653, 1209
BssMI GATC 6 cut(s) 99, 105, 175, 700, 713, 750
BssNI GRCGYC 2 cut(s) 30, 408
BssT1I CCWWGG 2 cut(s) 117, 1209
Bst2UI CCWGG 2 cut(s) 434, 956
Bst4CI ACNGT 2 cut(s) 139, 493
Bst6I CTCTTC 3 cut(s) 225, 840, 1002
BstACI GRCGYC 2 cut(s) 30, 408
BstDEI CTNAG 6 cut(s) 47, 148, 344, 645, 690, 720
BstF5I GGATG 2 cut(s) 65, 811
BstFNI CGCG 1 cut(s) 562
BstH2I RGCGCY 1 cut(s) 21
BstHHI GCGC 1 cut(s) 20
BstKTI GATC 6 cut(s) 102, 108, 178, 703, 716, 753
BstMAI GTCTC 3 cut(s) 270, 347, 1181
BstMBI GATC 6 cut(s) 99, 105, 175, 700, 713, 750
BstMWI GCNNNNNNNGC 2 cut(s) 72, 1082
BstNI CCWGG 2 cut(s) 434, 956
BstSCI CCNGG 5 cut(s) 131, 210, 415, 432, 954
BstSFI CTRYAG 2 cut(s) 372, 1083
BstSLI GKGCMC 1 cut(s) 637
BstUI CGCG 1 cut(s) 562
BstV1I GCAGC 6 cut(s) 150, 380, 708, 926, 929, 1129
BstV2I GAAGAC 1 cut(s) 1197
BstX2I RGATCY 3 cut(s) 175, 713, 750
BstYI RGATCY 3 cut(s) 175, 713, 750
BsuRI GGCC 4 cut(s) 122, 215, 603, 874
BtgZI GCGATG 2 cut(s) 110, 606
BtsCI GGATG 2 cut(s) 65, 811
BtsIMutI CAGTG 1 cut(s) 352
CfoI GCGC 1 cut(s) 20
Cfr13I GGNCC 3 cut(s) 245, 427, 602
CseI GACGC 1 cut(s) 38
Csp6I GTAC 1 cut(s) 379
CviAII CATG 3 cut(s) 172, 356, 1151
CviQI GTAC 1 cut(s) 379
DdeI CTNAG 6 cut(s) 47, 148, 344, 645, 690, 720
DpnI GATC 6 cut(s) 101, 107, 177, 702, 715, 752
DpnII GATC 6 cut(s) 99, 105, 175, 700, 713, 750
DrdI GACNNNNNNGTC 1 cut(s) 806
DseDI GACNNNNNNGTC 1 cut(s) 806
EaeI YGGCCR 2 cut(s) 120, 213
Eam1104I CTCTTC 3 cut(s) 225, 840, 1002
EarI CTCTTC 3 cut(s) 225, 840, 1002
EciI GGCGGA 2 cut(s) 103, 419
Eco130I CCWWGG 2 cut(s) 117, 1209
Eco31I GGTCTC 1 cut(s) 347
Eco47I GGWCC 2 cut(s) 245, 427
Eco57I CTGAAG 1 cut(s) 864
EcoRI GAATTC 1 cut(s) 313
EcoRII CCWGG 2 cut(s) 432, 954
EcoT14I CCWWGG 2 cut(s) 117, 1209
ErhI CCWWGG 2 cut(s) 117, 1209
FaeI CATG 3 cut(s) 175, 359, 1154
FaiI YATR 9 cut(s) 173, 357, 374, 387, 452, 469, 522, 1070, 1152
FaqI GGGAC 3 cut(s) 231, 499, 881
FatI CATG 3 cut(s) 171, 355, 1150
Fnu4HI GCNGC 9 cut(s) 33, 73, 164, 326, 369, 697, 915, 918, 1118
FokI GGATG 2 cut(s) 72, 818
Fsp4HI GCNGC 9 cut(s) 33, 73, 164, 326, 369, 697, 915, 918, 1118
FspBI CTAG 2 cut(s) 318, 855
GlaI GCGC 1 cut(s) 19
GluI GCNGC 9 cut(s) 33, 73, 164, 326, 369, 697, 915, 918, 1118
GsaI CCCAGC 1 cut(s) 1056
GsuI CTGGAG 2 cut(s) 242, 917
HaeII RGCGCY 1 cut(s) 21
HaeIII GGCC 4 cut(s) 122, 215, 603, 874
HapII CCGG 4 cut(s) 15, 133, 212, 416
HgaI GACGC 1 cut(s) 38
HhaI GCGC 1 cut(s) 20
Hin1I GRCGYC 2 cut(s) 30, 408
Hin1II CATG 3 cut(s) 175, 359, 1154
Hin6I GCGC 1 cut(s) 18
HinP1I GCGC 1 cut(s) 18
HincII GTYRAC 2 cut(s) 298, 685
HindII GTYRAC 2 cut(s) 298, 685
HinfI GANTC 7 cut(s) 155, 475, 824, 943, 1010, 1145, 1174
HpaI GTTAAC 1 cut(s) 685
HpaII CCGG 4 cut(s) 15, 133, 212, 416
HphI GGTGA 2 cut(s) 154, 371
Hpy166II GTNNAC 3 cut(s) 145, 298, 685
Hpy188I TCNGA 8 cut(s) 28, 160, 191, 403, 679, 713, 721, 1015
Hpy188III TCNNGA 7 cut(s) 103, 259, 487, 735, 934, 972, 1097
Hpy8I GTNNAC 3 cut(s) 145, 298, 685
Hpy99I CGWCG 6 cut(s) 32, 128, 191, 407, 410, 413
HpyAV CCTTC 3 cut(s) 402, 764, 1074
HpyCH4III ACNGT 2 cut(s) 139, 493
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 4 cut(s) 385, 625, 866, 1085
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 1082
HpyF3I CTNAG 6 cut(s) 47, 148, 344, 645, 690, 720
HpySE526I ACGT 1 cut(s) 408
Hsp92I GRCGYC 2 cut(s) 30, 408
Hsp92II CATG 3 cut(s) 175, 359, 1154
HspAI GCGC 1 cut(s) 18
KspAI GTTAAC 1 cut(s) 685
Kzo9I GATC 6 cut(s) 99, 105, 175, 700, 713, 750
LmnI GCTCC 4 cut(s) 17, 82, 160, 191
Lsp1109I GCAGC 6 cut(s) 150, 380, 708, 926, 929, 1129
MaeI CTAG 2 cut(s) 318, 855
MaeII ACGT 1 cut(s) 408
MalI GATC 6 cut(s) 101, 107, 177, 702, 715, 752
MboI GATC 6 cut(s) 99, 105, 175, 700, 713, 750
MboII GAAGA 9 cut(s) 212, 536, 708, 857, 1019, 1043, 1154, 1186, 1197
MflI RGATCY 3 cut(s) 175, 713, 750
MhlI GDGCHC 1 cut(s) 637
MluCI AATT 2 cut(s) 313, 983
MlyI GAGTC 4 cut(s) 469, 952, 1019, 1183
MmeI TCCRAC 4 cut(s) 51, 169, 426, 993
MseI TTAA 3 cut(s) 572, 684, 831
MslI CAYNNNNRTG 1 cut(s) 1098
MspI CCGG 4 cut(s) 15, 133, 212, 416
MspR9I CCNGG 5 cut(s) 133, 212, 417, 434, 956
Mva1269I GAATGC 1 cut(s) 967
MvaI CCWGG 2 cut(s) 434, 956
MvnI CGCG 1 cut(s) 562
MwoI GCNNNNNNNGC 2 cut(s) 72, 1082
NciI CCSGG 3 cut(s) 133, 212, 417
NdeII GATC 6 cut(s) 99, 105, 175, 700, 713, 750
NlaIII CATG 3 cut(s) 175, 359, 1154
NlaIV GGNNCC 3 cut(s) 193, 247, 636
NmeAIII GCCGAG 2 cut(s) 80, 634
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PctI GAATGC 1 cut(s) 967
PfeI GAWTC 3 cut(s) 155, 824, 1145
PflFI GACNNNGTC 1 cut(s) 407
PfoI TCCNGGA 1 cut(s) 415
PkrI GCNGC 9 cut(s) 34, 74, 165, 327, 370, 698, 916, 919, 1119
PleI GAGTC 4 cut(s) 469, 951, 1018, 1182
PpsI GAGTC 4 cut(s) 469, 951, 1018, 1182
Psp6I CCWGG 2 cut(s) 432, 954
PspFI CCCAGC 1 cut(s) 1052
PspGI CCWGG 2 cut(s) 432, 954
PspN4I GGNNCC 3 cut(s) 193, 247, 636
PspPI GGNCC 3 cut(s) 245, 427, 602
PstI CTGCAG 1 cut(s) 1087
PsuI RGATCY 3 cut(s) 175, 713, 750
PsyI GACNNNGTC 1 cut(s) 407
RsaI GTAC 1 cut(s) 380
RsaNI GTAC 1 cut(s) 379
RseI CAYNNNNRTG 1 cut(s) 1098
SaqAI TTAA 3 cut(s) 572, 684, 831
SatI GCNGC 9 cut(s) 33, 73, 164, 326, 369, 697, 915, 918, 1118
Sau3AI GATC 6 cut(s) 99, 105, 175, 700, 713, 750
Sau96I GGNCC 3 cut(s) 245, 427, 602
ScaI AGTACT 1 cut(s) 380
SchI GAGTC 4 cut(s) 469, 952, 1019, 1183
ScrFI CCNGG 5 cut(s) 133, 212, 417, 434, 956
SduI GDGCHC 1 cut(s) 637
SfcI CTRYAG 2 cut(s) 372, 1083
SinI GGWCC 2 cut(s) 245, 427
SmiMI CAYNNNNRTG 1 cut(s) 1098
Sse9I AATT 2 cut(s) 313, 983
SsiI CCGC 6 cut(s) 33, 72, 114, 325, 430, 1074
SspI AATATT 1 cut(s) 548
SspMI CTAG 2 cut(s) 318, 855
StyD4I CCNGG 5 cut(s) 131, 210, 415, 432, 954
StyI CCWWGG 2 cut(s) 117, 1209
TaaI ACNGT 2 cut(s) 139, 493
TaiI ACGT 1 cut(s) 411
TaqI TCGA 2 cut(s) 39, 153
TaqII GACCGA 1 cut(s) 233
TasI AATT 2 cut(s) 313, 983
TatI WGTACW 1 cut(s) 378
TauI GCSGC 3 cut(s) 35, 75, 328
TfiI GAWTC 3 cut(s) 155, 824, 1145
Tru1I TTAA 3 cut(s) 572, 684, 831
Tru9I TTAA 3 cut(s) 572, 684, 831
TscAI CASTG 1 cut(s) 352
TseI GCWGC 6 cut(s) 163, 368, 696, 914, 917, 1117
TspDTI ATGAA 5 cut(s) 384, 537, 551, 849, 1082
TspGWI ACGGA 2 cut(s) 175, 836
TspRI CASTG 1 cut(s) 352
Tth111I GACNNNGTC 1 cut(s) 407
VpaK11BI GGWCC 2 cut(s) 245, 427
XapI RAATTY 2 cut(s) 313, 983
XspI CTAG 2 cut(s) 318, 855
ZraI GACGTC 1 cut(s) 409
ZrmI AGTACT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.