Prupe.7G259200_v2.0.a1

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0009872
Physical Location & Seq
Forward (+)
21610263 .. 21614110
3848 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G259200.1

Sequence Viewer

Length: 882 bp
ATGGGCAATGTAACGTCGGGTGTGGCTGCAAAGTTTGCATTTTTCCCTCCAGACCCACCCACCTATGATGTGCACAAAGACGACGGTGGTAAGCTTGTGTTCTCGGGAGTTACAGCTGACAAGAACATGGAAGTGCATTTGCTTGATACAAAAGCAGGGAACAAGATCGTTGCCACGTTTTGGAAGCACCCTTTTGCCAGGTTCACGCTTCTCTACTCGCATGGTAATGCTGCTGACTTGGGTCAGATGCACGAGCTCTTCATTGAGCTCAGGGCTCACCTGCGTGTCAATATTATGAGCTATGACTATTCAGGATATGGAGCATCAGCTGGTAAGCCATCTGAGTTCAACACATATTATGACATAGAAGCTGTGTACGATTGTTTAAAGAACGACTACGAAATAAGACAAGAGGATTTGATACTGTATGGCCAATCTGTTGGAAGCGGACCAACACTGCACTTGGGTTCTCGCTTACAGAAACTGAGAGCCGTTGTTCTTCATAGTGCCATCCTGTCAGGCATACGAGTCTTGTATCCCGTCAAGTTGACGTTTTGGTTTGACATTTTCAAAAATATAGACAAAATACGGCACGTCAACTGTACGGTTTTAGTTATACATGGAACAGATGATGAAATTGTTGATTGGTCCCATGGAAAGCGTTTATGGGAACTTTCCAAGGAAAAGTATGATCCCTTATGGGTCAAGGGTGGAGGCCACTGCAATCTCGAAACATATCCCGAGTACATTAAGCACTTACGCAAATTCATAAATGCAATGGAGAAACTTTCGCTCGCTAAACAAACGAAGAAACAACTCACTTCTAACCTAAGTATCACAGAAGTAAAACACAACAAGTGCTTGAGATTTGGAAAAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

294

Amino Acids

33.32

Weight (kDa)

8.93

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009872)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24320 AT2G24320 AT4G31020 AT4G31020
fragaria_vesca FvH4_1g01310 FvH4_1g01310
malus_domestica MD02G1010900.v1.1 MD15G1155900.v1.1
prunus_persica Prupe.7G259200_v2.0.a1
pyrus_communis pycom02g00980 pycom15g13990
rosa_chinensis RchiOBHm_Chr2g0086141
rosa_laevigata RLG00000015747
rosa_multiflora Rmu_sc0004510.1_g000007
rosa_roxburghii Rroxscaffold_2G00154770
rosa_rugosa Rorug01G0466100
rosa_samantha Rh2AG015900 Rh2BG015900 Rh2CG016700 Rh2DG017900
rosa_wichuraiana Rw2G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 288
Acc36I ACCTGC 1 cut(s) 288
AccB7I CCANNNNNTGG 1 cut(s) 180
AciI CCGC 1 cut(s) 447
AclWI GGATC 1 cut(s) 686
AcoI YGGCCR 1 cut(s) 430
AcsI RAATTY 1 cut(s) 764
AfaI GTAC 3 cut(s) 377, 604, 746
AfiI CCNNNNNNNGG 1 cut(s) 180
AgsI TTSAA 2 cut(s) 349, 571
AjiI CACGTC 1 cut(s) 595
AjnI CCWGG 1 cut(s) 197
AleI CACNNNNGTG 1 cut(s) 282
AluBI AGCT 7 cut(s) 94, 116, 256, 268, 300, 329, 371
AluI AGCT 7 cut(s) 94, 116, 256, 268, 300, 329, 371
Alw21I GWGCWC 3 cut(s) 75, 258, 270
Alw44I GTGCAC 1 cut(s) 71
AlwI GGATC 1 cut(s) 686
AlwNI CAGNNNCTG 1 cut(s) 484
Ama87I CYCGRG 2 cut(s) 103, 740
AoxI GGCC 2 cut(s) 430, 715
ApaLI GTGCAC 1 cut(s) 71
ApeKI GCWGC 2 cut(s) 26, 230
ApoI RAATTY 1 cut(s) 764
AspS9I GGNCC 2 cut(s) 449, 648
AsuHPI GGTGA 1 cut(s) 269
AvaI CYCGRG 2 cut(s) 103, 740
AvaII GGWCC 2 cut(s) 449, 648
BaeGI GKGCMC 1 cut(s) 75
BaeI ACNNNNGTAYC 2 cut(s) 817, 850
BalI TGGCCA 1 cut(s) 432
BanII GRGCYC 3 cut(s) 258, 270, 277
BauI CACGAG 1 cut(s) 251
Bbv12I GWGCWC 3 cut(s) 75, 258, 270
BbvI GCAGC 2 cut(s) 13, 217
BccI CCATC 2 cut(s) 346, 518
BceAI ACGGC 2 cut(s) 476, 605
BciT130I CCWGG 1 cut(s) 199
BciVI GTATCC 1 cut(s) 546
BfuAI ACCTGC 1 cut(s) 288
BfuI GTATCC 1 cut(s) 546
BisI GCNGC 2 cut(s) 27, 231
BlsI GCNGC 2 cut(s) 28, 232
Bme1390I CCNGG 1 cut(s) 199
Bme18I GGWCC 2 cut(s) 449, 648
BmeT110I CYCGRG 2 cut(s) 103, 740
BmgBI CACGTC 1 cut(s) 595
BmgT120I GGNCC 2 cut(s) 449, 648
BmiI GGNNCC 1 cut(s) 650
BmrFI CCNGG 1 cut(s) 199
BmsI GCATC 2 cut(s) 237, 332
BoxI GACNNNNGTC 1 cut(s) 240
BpmI CTGGAG 1 cut(s) 33
Bpu10I CCTNAGC 1 cut(s) 269
BsaJI CCNNGG 2 cut(s) 652, 678
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse3DI GCAATG 2 cut(s) 13, 783
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 2 cut(s) 652, 678
BseGI GGATG 1 cut(s) 510
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMI GCAATG 2 cut(s) 13, 783
BseMII CTCAG 3 cut(s) 283, 333, 476
BseSI GKGCMC 1 cut(s) 75
BseXI GCAGC 2 cut(s) 13, 217
BsgI GTGCAG 1 cut(s) 443
BshFI GGCC 2 cut(s) 432, 717
BsiHKAI GWGCWC 3 cut(s) 75, 258, 270
BsiHKCI CYCGRG 2 cut(s) 103, 740
BslFI GGGAC 1 cut(s) 634
BslI CCNNNNNNNGG 1 cut(s) 180
BsmFI GGGAC 1 cut(s) 634
BsnI GGCC 2 cut(s) 432, 717
BsoBI CYCGRG 2 cut(s) 103, 740
Bsp1286I GDGCHC 4 cut(s) 75, 258, 270, 277
Bsp143I GATC 2 cut(s) 165, 691
Bsp19I CCATGG 1 cut(s) 652
BspACI CCGC 1 cut(s) 447
BspANI GGCC 2 cut(s) 432, 717
BspCNI CTCAG 3 cut(s) 282, 334, 477
BspLI GGNNCC 1 cut(s) 650
BspMI ACCTGC 1 cut(s) 288
BspPI GGATC 1 cut(s) 686
BspQI GCTCTTC 1 cut(s) 263
BsrDI GCAATG 2 cut(s) 13, 783
BssECI CCNNGG 2 cut(s) 652, 678
BssMI GATC 2 cut(s) 165, 691
BssSI CACGAG 1 cut(s) 251
BssT1I CCWWGG 2 cut(s) 652, 678
Bst2BI CACGAG 1 cut(s) 251
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 4 cut(s) 86, 426, 602, 607
Bst6I CTCTTC 1 cut(s) 263
BstAPI GCANNNNNTGC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 795
BstDEI CTNAG 4 cut(s) 269, 342, 485, 830
BstDSI CCRYGG 1 cut(s) 652
BstF5I GGATG 1 cut(s) 510
BstKTI GATC 2 cut(s) 168, 694
BstMBI GATC 2 cut(s) 165, 691
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 199
BstPAI GACNNNNGTC 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 197
BstSLI GKGCMC 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 13, 217
BstXI CCANNNNNNTGG 1 cut(s) 440
BsuI GTATCC 1 cut(s) 546
BsuRI GGCC 2 cut(s) 432, 717
BtgI CCRYGG 1 cut(s) 652
BtrI CACGTC 1 cut(s) 595
BtsCI GGATG 1 cut(s) 510
BtsI GCAGTG 2 cut(s) 455, 718
BtsIMutI CAGTG 2 cut(s) 455, 718
BveI ACCTGC 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 795
CaiI CAGNNNCTG 1 cut(s) 484
Cfr13I GGNCC 2 cut(s) 449, 648
Csp6I GTAC 3 cut(s) 376, 603, 745
CviAII CATG 4 cut(s) 127, 221, 620, 653
CviQI GTAC 3 cut(s) 376, 603, 745
DdeI CTNAG 4 cut(s) 269, 342, 485, 830
DpnI GATC 2 cut(s) 167, 693
DpnII GATC 2 cut(s) 165, 691
DraI TTTAAA 1 cut(s) 387
EaeI YGGCCR 1 cut(s) 430
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
Ecl136II GAGCTC 2 cut(s) 256, 268
Eco130I CCWWGG 2 cut(s) 652, 678
Eco24I GRGCYC 3 cut(s) 258, 270, 277
Eco47I GGWCC 2 cut(s) 449, 648
Eco53kI GAGCTC 2 cut(s) 256, 268
Eco88I CYCGRG 2 cut(s) 103, 740
EcoICRI GAGCTC 2 cut(s) 256, 268
EcoRII CCWGG 1 cut(s) 197
EcoT14I CCWWGG 2 cut(s) 652, 678
EcoT38I GRGCYC 3 cut(s) 258, 270, 277
ErhI CCWWGG 2 cut(s) 652, 678
FaeI CATG 4 cut(s) 130, 224, 623, 656
FaqI GGGAC 1 cut(s) 634
FatI CATG 4 cut(s) 126, 220, 619, 652
Fnu4HI GCNGC 2 cut(s) 27, 231
FokI GGATG 1 cut(s) 497
FriOI GRGCYC 3 cut(s) 258, 270, 277
Fsp4HI GCNGC 2 cut(s) 27, 231
GluI GCNGC 2 cut(s) 27, 231
GsuI CTGGAG 1 cut(s) 33
HaeIII GGCC 2 cut(s) 432, 717
Hin1II CATG 4 cut(s) 130, 224, 623, 656
HincII GTYRAC 2 cut(s) 549, 598
HindII GTYRAC 2 cut(s) 549, 598
HindIII AAGCTT 1 cut(s) 92
HinfI GANTC 1 cut(s) 528
HphI GGTGA 1 cut(s) 269
Hpy166II GTNNAC 5 cut(s) 73, 204, 376, 549, 598
Hpy188I TCNGA 2 cut(s) 246, 343
Hpy188III TCNNGA 5 cut(s) 50, 105, 312, 728, 740
Hpy8I GTNNAC 5 cut(s) 73, 204, 376, 549, 598
Hpy99I CGWCG 2 cut(s) 19, 86
HpyCH4III ACNGT 4 cut(s) 86, 426, 602, 607
HpyCH4IV ACGT 4 cut(s) 14, 176, 551, 594
HpyCH4V TGCA 8 cut(s) 29, 38, 73, 136, 250, 460, 723, 776
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 4 cut(s) 269, 342, 485, 830
HpySE526I ACGT 4 cut(s) 14, 176, 551, 594
Hsp92II CATG 4 cut(s) 130, 224, 623, 656
Kzo9I GATC 2 cut(s) 165, 691
LguI GCTCTTC 1 cut(s) 263
LmnI GCTCC 1 cut(s) 320
Lsp1109I GCAGC 2 cut(s) 13, 217
LweI GCATC 2 cut(s) 237, 332
MaeII ACGT 4 cut(s) 14, 176, 551, 594
MaeIII GTNAC 2 cut(s) 10, 109
MalI GATC 2 cut(s) 167, 693
MboI GATC 2 cut(s) 165, 691
MboII GAAGA 3 cut(s) 250, 491, 820
MhlI GDGCHC 4 cut(s) 75, 258, 270, 277
MlsI TGGCCA 1 cut(s) 432
MluCI AATT 2 cut(s) 636, 764
MluNI TGGCCA 1 cut(s) 432
MlyI GAGTC 1 cut(s) 537
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 3 cut(s) 57, 406, 707
Mox20I TGGCCA 1 cut(s) 432
MscI TGGCCA 1 cut(s) 432
MseI TTAA 2 cut(s) 386, 750
MslI CAYNNNNRTG 3 cut(s) 131, 225, 282
Msp20I TGGCCA 1 cut(s) 432
MspA1I CMGCKG 2 cut(s) 116, 329
MspR9I CCNGG 1 cut(s) 199
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 1 cut(s) 35
NcoI CCATGG 1 cut(s) 652
NdeII GATC 2 cut(s) 165, 691
NlaIII CATG 4 cut(s) 130, 224, 623, 656
NlaIV GGNNCC 1 cut(s) 650
OliI CACNNNNGTG 1 cut(s) 282
PaqCI CACCTGC 1 cut(s) 288
PciSI GCTCTTC 1 cut(s) 263
PflMI CCANNNNNTGG 1 cut(s) 180
PkrI GCNGC 2 cut(s) 28, 232
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
PshAI GACNNNNGTC 1 cut(s) 240
Psp124BI GAGCTC 2 cut(s) 258, 270
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 1 cut(s) 650
PspPI GGNCC 2 cut(s) 449, 648
PstNI CAGNNNCTG 1 cut(s) 484
PvuII CAGCTG 2 cut(s) 116, 329
RsaI GTAC 3 cut(s) 377, 604, 746
RsaNI GTAC 3 cut(s) 376, 603, 745
RseI CAYNNNNRTG 3 cut(s) 131, 225, 282
SacI GAGCTC 2 cut(s) 258, 270
SapI GCTCTTC 1 cut(s) 263
SaqAI TTAA 2 cut(s) 386, 750
SatI GCNGC 2 cut(s) 27, 231
Sau3AI GATC 2 cut(s) 165, 691
Sau96I GGNCC 2 cut(s) 449, 648
SchI GAGTC 1 cut(s) 537
ScrFI CCNGG 1 cut(s) 199
SduI GDGCHC 4 cut(s) 75, 258, 270, 277
SfaNI GCATC 2 cut(s) 237, 332
SinI GGWCC 2 cut(s) 449, 648
SmiMI CAYNNNNRTG 3 cut(s) 131, 225, 282
SmlI CTYRAG 1 cut(s) 862
SmoI CTYRAG 1 cut(s) 862
Sse9I AATT 2 cut(s) 636, 764
SsiI CCGC 1 cut(s) 447
SspI AATATT 1 cut(s) 292
SstI GAGCTC 2 cut(s) 258, 270
StyD4I CCNGG 1 cut(s) 197
StyI CCWWGG 2 cut(s) 652, 678
TaaI ACNGT 4 cut(s) 86, 426, 602, 607
TaiI ACGT 4 cut(s) 17, 179, 554, 597
TaqI TCGA 1 cut(s) 729
TasI AATT 2 cut(s) 636, 764
TatI WGTACW 1 cut(s) 744
Tru1I TTAA 2 cut(s) 386, 750
Tru9I TTAA 2 cut(s) 386, 750
TscAI CASTG 2 cut(s) 462, 725
TseI GCWGC 2 cut(s) 26, 230
TspDTI ATGAA 4 cut(s) 250, 491, 648, 757
TspRI CASTG 2 cut(s) 462, 725
Van91I CCANNNNNTGG 1 cut(s) 180
VneI GTGCAC 1 cut(s) 71
VpaK11BI GGWCC 2 cut(s) 449, 648
XapI RAATTY 1 cut(s) 764
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.