Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0009872

Physical Location & Seq

Genomic Coordinates Forward (+)

91272478 .. 91275947

Gene Structure 3470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00154770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGGCAATGTAACGTCTGGTGTGGCTGCAAAGTTTGCGTTCTTTCCACCAGACCCGCCGACTTATGATGTGTCGCAAGACGAAGGAGGGAAGCTTGTGTTCTCTGGAGTCTCGGGTGATAAGAACATGGATGTGCATTTGGTTGAGACCAAAGGAGGAAACAAAGTCGTTGCCACGTTTTGGAAGCACCCTTTTGCCAGGTTCACCATTCTTTACTCCCATGGCAATGCTGCTGATTTGGGTCAGATGCATGACCTCTTCATTGAGCTCAGGGCTCACCTCAGGGTTAATATCATGAGCTATGATTATTCAGGATATGGAGCATCCAGCGGTAAGCCATCTGAGTTCAACACCTATCATGACATAGAAGCTGTGTACAATTGCTTAAAGAGCGAATATGGAGTAAAGCAAGAAGATTTGATACTTTACGGCCAATCTGTTGGAAGTGGACCAACACTGCACATGGCTTCTCGGTTAAAGAGGTTGAGAGCTGTTGTTCTTCATAGTGCAATCCTTTCAGGCATACGAGTCTTGTATAATATCAAAGTGACATTTTGGTTCGACATTTTTAAAGTAAGTTGGAATTGTACACGTGGAATCTATCATTTTGGTGCTAGTCTCATTTACTTAGAACCTGTATTGAAAAGCTTTGTCCAATATGTGCAGAATATAGACAAAATACGGCATGTCACCTGTCCGGTTTTAGTTATACATGGAACAGAAGATGACATTGTTGATTTGTCCCATGGGAAGCGTTTATGGGAACTCGCCAAGGAAAAATATGACCCCTTATGGGTCAAGGGCGGAGGCCATTGCAACCTAGAGACGTATCCAGAGTACATTAAGCACTTACGCAAGTTCATAAATGCCATGGAGAAACTCTCACTCTCGAATCAAACGAAGAAAGAACTCACTTCTACCCCAAGTATTGAATTAAAACACAACAAGTGCTTGAGATTTGGAAAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hydrolase_4

Protein Analysis

323

Amino Acids

36.53

Weight (kDa)

8.96

Isoelectric Point (pI)

41.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hydrolase_4	PF12146	68 - 173	6.9e-07	Serine aminopeptidase, S33
Abhydrolase_1	PF00561	70 - 170	5.8e-07	alpha/beta hydrolase fold
Abhydrolase_6	PF12697	74 - 279	2.2e-08	Alpha/beta hydrolase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009872)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G24320 AT2G24320 AT4G31020 AT4G31020
fragaria_vesca	FvH4_1g01310 FvH4_1g01310
malus_domestica	MD02G1010900.v1.1 MD15G1155900.v1.1
prunus_persica	Prupe.7G259200_v2.0.a1
pyrus_communis	pycom02g00980 pycom15g13990
rosa_chinensis	RchiOBHm_Chr2g0086141
rosa_laevigata	RLG00000015747
rosa_multiflora	Rmu_sc0004510.1_g000007
rosa_roxburghii	Rroxscaffold_2G00154770
rosa_rugosa	Rorug01G0466100
rosa_samantha	Rh2AG015900 Rh2BG015900 Rh2CG016700 Rh2DG017900
rosa_wichuraiana	Rw2G001370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	180
AciI	CCGC	3 cut(s)	56, 330, 804
AcoI	YGGCCR	1 cut(s)	430
AcvI	CACGTG	1 cut(s)	593
AfaI	GTAC	3 cut(s)	377, 589, 839
AfiI	CCNNNNNNNGG	2 cut(s)	180, 793
AflIII	ACRYGT	1 cut(s)	590
AgsI	TTSAA	3 cut(s)	349, 643, 932
AjnI	CCWGG	1 cut(s)	197
AluBI	AGCT	6 cut(s)	94, 268, 300, 371, 491, 648
AluI	AGCT	6 cut(s)	94, 268, 300, 371, 491, 648
Alw21I	GWGCWC	1 cut(s)	270
Alw26I	GTCTC	4 cut(s)	115, 140, 623, 818
Ama87I	CYCGRG	1 cut(s)	112
AoxI	GGCC	2 cut(s)	430, 808
ApeKI	GCWGC	2 cut(s)	26, 230
AspS9I	GGNCC	1 cut(s)	449
AsuHPI	GGTGA	4 cut(s)	128, 196, 269, 682
AvaI	CYCGRG	1 cut(s)	112
AvaII	GGWCC	1 cut(s)	449
AxyI	CCTNAGG	1 cut(s)	281
BanII	GRGCYC	2 cut(s)	270, 277
BarI	GAAGNNNNNNTAC	2 cut(s)	405, 437
BbrPI	CACGTG	1 cut(s)	593
Bbv12I	GWGCWC	1 cut(s)	270
BbvI	GCAGC	2 cut(s)	13, 217
BccI	CCATC	1 cut(s)	346
BceAI	ACGGC	2 cut(s)	445, 698
BciT130I	CCWGG	1 cut(s)	199
BciVI	GTATCC	1 cut(s)	840
BcoDI	GTCTC	4 cut(s)	115, 140, 623, 818
BfaI	CTAG	2 cut(s)	615, 821
BfuI	GTATCC	1 cut(s)	840
BisI	GCNGC	2 cut(s)	27, 231
BlsI	GCNGC	2 cut(s)	28, 232
Bme1390I	CCNGG	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	449
BmeT110I	CYCGRG	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	449
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	2 cut(s)	237, 332
BplI	GAGNNNNNCTC	2 cut(s)	866, 898
BpmI	CTGGAG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	593
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	4 cut(s)	220, 745, 771, 870
BsaWI	WCCGGW	1 cut(s)	697
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 793
Bse21I	CCTNAGG	1 cut(s)	281
Bse3DI	GCAATG	3 cut(s)	13, 232, 811
BseBI	CCWGG	1 cut(s)	199
BseDI	CCNNGG	4 cut(s)	220, 745, 771, 870
BseGI	GGATG	2 cut(s)	136, 323
BseLI	CCNNNNNNNGG	2 cut(s)	180, 793
BseMI	GCAATG	3 cut(s)	13, 232, 811
BseMII	CTCAG	3 cut(s)	283, 295, 333
BseXI	GCAGC	2 cut(s)	13, 217
BsgI	GTGCAG	2 cut(s)	443, 683
BshFI	GGCC	2 cut(s)	432, 810
BsiHKAI	GWGCWC	1 cut(s)	270
BsiHKCI	CYCGRG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	698
BslFI	GGGAC	1 cut(s)	727
BslI	CCNNNNNNNGG	2 cut(s)	180, 793
BsmAI	GTCTC	4 cut(s)	115, 140, 623, 818
BsmBI	CGTCTC	1 cut(s)	818
BsmFI	GGGAC	1 cut(s)	727
BsnI	GGCC	2 cut(s)	432, 810
Bso31I	GGTCTC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	112
Bsp1286I	GDGCHC	2 cut(s)	270, 277
Bsp1407I	TGTACA	2 cut(s)	375, 587
Bsp19I	CCATGG	3 cut(s)	220, 745, 870
BspACI	CCGC	3 cut(s)	56, 330, 804
BspANI	GGCC	2 cut(s)	432, 810
BspCNI	CTCAG	3 cut(s)	282, 294, 334
BspHI	TCATGA	2 cut(s)	294, 358
BspTNI	GGTCTC	1 cut(s)	140
BsrDI	GCAATG	3 cut(s)	13, 232, 811
BsrGI	TGTACA	2 cut(s)	375, 587
BssECI	CCNNGG	4 cut(s)	220, 745, 771, 870
BssT1I	CCWWGG	4 cut(s)	220, 745, 771, 870
Bst2UI	CCWGG	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	263
BstAPI	GCANNNNNTGC	1 cut(s)	35
BstAUI	TGTACA	2 cut(s)	375, 587
BstBAI	YACGTR	1 cut(s)	593
BstDEI	CTNAG	4 cut(s)	269, 281, 342, 628
BstDSI	CCRYGG	3 cut(s)	220, 745, 870
BstF5I	GGATG	2 cut(s)	136, 323
BstMAI	GTCTC	4 cut(s)	115, 140, 623, 818
BstMWI	GCNNNNNNNGC	2 cut(s)	35, 390
BstNI	CCWGG	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	689
BstSCI	CCNGG	1 cut(s)	197
BstV1I	GCAGC	2 cut(s)	13, 217
BstXI	CCANNNNNNTGG	1 cut(s)	440
Bsu36I	CCTNAGG	1 cut(s)	281
BsuI	GTATCC	1 cut(s)	840
BsuRI	GGCC	2 cut(s)	432, 810
BtgI	CCRYGG	3 cut(s)	220, 745, 870
BtsCI	GGATG	2 cut(s)	136, 323
BtsI	GCAGTG	1 cut(s)	455
BtsIMutI	CAGTG	1 cut(s)	455
CciI	TCATGA	2 cut(s)	294, 358
Cfr13I	GGNCC	1 cut(s)	449
Csp6I	GTAC	3 cut(s)	376, 588, 838
CviQI	GTAC	3 cut(s)	376, 588, 838
DdeI	CTNAG	4 cut(s)	269, 281, 342, 628
DraI	TTTAAA	1 cut(s)	571
EaeI	YGGCCR	1 cut(s)	430
Eam1104I	CTCTTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	263
EciI	GGCGGA	1 cut(s)	819
Ecl136II	GAGCTC	1 cut(s)	268
Eco130I	CCWWGG	4 cut(s)	220, 745, 771, 870
Eco24I	GRGCYC	2 cut(s)	270, 277
Eco31I	GGTCTC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	449
Eco53kI	GAGCTC	1 cut(s)	268
Eco72I	CACGTG	1 cut(s)	593
Eco81I	CCTNAGG	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	112
EcoICRI	GAGCTC	1 cut(s)	268
EcoRII	CCWGG	1 cut(s)	197
EcoT14I	CCWWGG	4 cut(s)	220, 745, 771, 870
EcoT22I	ATGCAT	1 cut(s)	252
EcoT38I	GRGCYC	2 cut(s)	270, 277
ErhI	CCWWGG	4 cut(s)	220, 745, 771, 870
Esp3I	CGTCTC	1 cut(s)	818
FaqI	GGGAC	1 cut(s)	727
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	2 cut(s)	27, 231
FokI	GGATG	2 cut(s)	143, 310
FriOI	GRGCYC	2 cut(s)	270, 277
Fsp4HI	GCNGC	2 cut(s)	27, 231
FspBI	CTAG	2 cut(s)	615, 821
GluI	GCNGC	2 cut(s)	27, 231
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	432, 810
HapII	CCGG	1 cut(s)	698
HindIII	AAGCTT	2 cut(s)	92, 646
HinfI	GANTC	4 cut(s)	108, 528, 597, 892
HpaII	CCGG	1 cut(s)	698
HphI	GGTGA	4 cut(s)	128, 196, 269, 682
Hpy166II	GTNNAC	4 cut(s)	204, 376, 449, 590
Hpy188I	TCNGA	2 cut(s)	246, 343
Hpy188III	TCNNGA	6 cut(s)	105, 295, 312, 359, 833, 889
Hpy8I	GTNNAC	4 cut(s)	204, 376, 449, 590
HpyAV	CCTTC	1 cut(s)	77
HpyCH4IV	ACGT	4 cut(s)	14, 176, 592, 827
HpyCH4V	TGCA	7 cut(s)	29, 136, 250, 460, 509, 664, 816
HpyF10VI	GCNNNNNNNGC	2 cut(s)	35, 390
HpyF3I	CTNAG	4 cut(s)	269, 281, 342, 628
HpySE526I	ACGT	4 cut(s)	14, 176, 592, 827
LmnI	GCTCC	1 cut(s)	320
Lsp1109I	GCAGC	2 cut(s)	13, 217
LweI	GCATC	2 cut(s)	237, 332
MaeI	CTAG	2 cut(s)	615, 821
MaeII	ACGT	4 cut(s)	14, 176, 592, 827
MaeIII	GTNAC	3 cut(s)	10, 547, 688
MboII	GAAGA	5 cut(s)	250, 425, 491, 734, 913
MfeI	CAATTG	1 cut(s)	379
MhlI	GDGCHC	2 cut(s)	270, 277
MluCI	AATT	3 cut(s)	379, 583, 932
MlyI	GAGTC	2 cut(s)	117, 537
MmeI	TCCRAC	2 cut(s)	421, 560
MnlI	CCTC	6 cut(s)	80, 149, 266, 290, 474, 800
Mph1103I	ATGCAT	1 cut(s)	252
MseI	TTAA	6 cut(s)	288, 386, 476, 570, 843, 935
MslI	CAYNNNNRTG	3 cut(s)	131, 225, 609
MspA1I	CMGCKG	1 cut(s)	330
MspI	CCGG	1 cut(s)	698
MspR9I	CCNGG	1 cut(s)	199
MunI	CAATTG	1 cut(s)	379
MvaI	CCWGG	1 cut(s)	199
MwoI	GCNNNNNNNGC	2 cut(s)	35, 390
NcoI	CCATGG	3 cut(s)	220, 745, 870
NmuCI	GTSAC	2 cut(s)	547, 688
NsiI	ATGCAT	1 cut(s)	252
NspI	RCATGY	1 cut(s)	689
PagI	TCATGA	2 cut(s)	294, 358
PcsI	WCGNNNNNNNCGW	1 cut(s)	896
PfeI	GAWTC	2 cut(s)	597, 892
PflMI	CCANNNNNTGG	1 cut(s)	180
PkrI	GCNGC	2 cut(s)	28, 232
PleI	GAGTC	2 cut(s)	116, 536
PmaCI	CACGTG	1 cut(s)	593
PmlI	CACGTG	1 cut(s)	593
PpsI	GAGTC	2 cut(s)	116, 536
Ppu21I	YACGTR	1 cut(s)	593
Psp124BI	GAGCTC	1 cut(s)	270
Psp6I	CCWGG	1 cut(s)	197
PspCI	CACGTG	1 cut(s)	593
PspGI	CCWGG	1 cut(s)	197
PspPI	GGNCC	1 cut(s)	449
RsaI	GTAC	3 cut(s)	377, 589, 839
RsaNI	GTAC	3 cut(s)	376, 588, 838
RseI	CAYNNNNRTG	3 cut(s)	131, 225, 609
SacI	GAGCTC	1 cut(s)	270
SaqAI	TTAA	6 cut(s)	288, 386, 476, 570, 843, 935
SatI	GCNGC	2 cut(s)	27, 231
Sau96I	GGNCC	1 cut(s)	449
SchI	GAGTC	2 cut(s)	117, 537
ScrFI	CCNGG	1 cut(s)	199
SduI	GDGCHC	2 cut(s)	270, 277
SfaNI	GCATC	2 cut(s)	237, 332
SinI	GGWCC	1 cut(s)	449
SmiMI	CAYNNNNRTG	3 cut(s)	131, 225, 609
SmlI	CTYRAG	1 cut(s)	952
SmoI	CTYRAG	1 cut(s)	952
Sse9I	AATT	3 cut(s)	379, 583, 932
SsiI	CCGC	3 cut(s)	56, 330, 804
SspMI	CTAG	2 cut(s)	615, 821
SstI	GAGCTC	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	197
StyI	CCWWGG	4 cut(s)	220, 745, 771, 870
TaiI	ACGT	4 cut(s)	17, 179, 595, 830
TaqI	TCGA	2 cut(s)	561, 890
TasI	AATT	3 cut(s)	379, 583, 932
TatI	WGTACW	3 cut(s)	375, 587, 837
TfiI	GAWTC	2 cut(s)	597, 892
Tru1I	TTAA	6 cut(s)	288, 386, 476, 570, 843, 935
Tru9I	TTAA	6 cut(s)	288, 386, 476, 570, 843, 935
TscAI	CASTG	1 cut(s)	462
TseFI	GTSAC	2 cut(s)	547, 688
TseI	GCWGC	2 cut(s)	26, 230
Tsp45I	GTSAC	2 cut(s)	547, 688
TspDTI	ATGAA	3 cut(s)	250, 491, 850
TspRI	CASTG	1 cut(s)	462
Van91I	CCANNNNNTGG	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	449
XceI	RCATGY	1 cut(s)	689
XspI	CTAG	2 cut(s)	615, 821
Zsp2I	ATGCAT	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.