pycom02g00980

domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0009872
Physical Location & Seq
Reverse (-)
571457 .. 573974
2518 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g00980.5

Sequence Viewer

Length: 888 bp
ATGGGCAACGTGACGGCGGGCGTGGCGGCCAAGTTTGCGTTTTTCCCGCCGGACCCGCCGACGTACGACGTGTACAAGGACGAGGGCGGGAAGCTGGTGTTTTCCGGCGTGACGGCGGACAAGAACATGGAGGTGCATTTGTTGGACACGAAGGGCGGGAACAAGATCGTGGCGACGTTTTGGCGGCACCCGTTCGCGCGGTTCACGCTGCTATACTCGCATGGGAATGCCGCGGACTTGGGGCAGATGCACGAGCTCTTCATTGAGCTCAGGGCTCACCTGCGTGTCAATATTATGAGTTATGACTATTCGGGATATGGAGCATCCACTGGTAAGCCATCTGAGTTCAACACATACTATGACATAGAAGCCGTGTACAATTGTTTAAAGAGCGACTATGAAATTAGACAAGAGGATTTGATAGTGTATGGCCAATCTGTTGGAAGCGGACCAACACTGCACTTGGCTTCTCGCTTGAAAAAACTCAGAGCCGTTGTTCTTCACAGTGCCATCCTTTCAGGCATACGAGTCTTGTATCCTGTCAAGTTGACATTTTGGTTCGACATTTTCAAAAATATAGACAAAATACGGCATGTCAGCTGTCCGGTTTTAGTTATTCATGGAACAGAGGATGAAATTGTTGACTTGTCCCACGGAAAGCGTTTGTGGGAACTATCCAAGGAAAAATATGATCCATTATGGGTGAAGGGTGGAGGCCACTGCAACCTCGAAACATTTCCGGAGTACATAAAGCACTTGCGCAAGTTCATAAACGCAATGGAGAAACTCGCGCTCACAAAACCACAAAAGGCGAAGAAACAACTCACTTCTGATGGAAGCATCACAGAAGTAAAACACAATAAGTGCTTGAGATTTAGAAAGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrolase_4

Protein Analysis

296

Amino Acids

33.51

Weight (kDa)

9.18

Isoelectric Point (pI)

40.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0009872)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G24320 AT2G24320 AT4G31020 AT4G31020
fragaria_vesca FvH4_1g01310 FvH4_1g01310
malus_domestica MD02G1010900.v1.1 MD15G1155900.v1.1
prunus_persica Prupe.7G259200_v2.0.a1
pyrus_communis pycom02g00980 pycom15g13990
rosa_chinensis RchiOBHm_Chr2g0086141
rosa_laevigata RLG00000015747
rosa_multiflora Rmu_sc0004510.1_g000007
rosa_roxburghii Rroxscaffold_2G00154770
rosa_rugosa Rorug01G0466100
rosa_samantha Rh2AG015900 Rh2BG015900 Rh2CG016700 Rh2DG017900
rosa_wichuraiana Rw2G001370

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 288
Acc16I TGCGCA 1 cut(s) 761
Acc36I ACCTGC 1 cut(s) 288
AccB1I GGYRCC 1 cut(s) 186
AccII CGCG 4 cut(s) 197, 199, 233, 791
AccIII TCCGGA 1 cut(s) 739
AclWI GGATC 1 cut(s) 686
AcoI YGGCCR 2 cut(s) 27, 430
AfaI GTAC 4 cut(s) 65, 74, 377, 746
AflIII ACRYGT 1 cut(s) 69
AgsI TTSAA 3 cut(s) 349, 478, 571
AjiI CACGTC 1 cut(s) 70
AleI CACNNNNGTG 1 cut(s) 282
AluBI AGCT 4 cut(s) 94, 256, 268, 600
AluI AGCT 4 cut(s) 94, 256, 268, 600
Alw21I GWGCWC 2 cut(s) 258, 270
AlwI GGATC 1 cut(s) 686
Aor13HI TCCGGA 1 cut(s) 739
AoxI GGCC 3 cut(s) 27, 430, 715
ApeKI GCWGC 1 cut(s) 208
Asp700I GAANNNNTTC 1 cut(s) 735
AspLEI GCGC 3 cut(s) 199, 762, 793
AspS9I GGNCC 2 cut(s) 52, 449
AsuHPI GGTGA 2 cut(s) 269, 715
AvaII GGWCC 2 cut(s) 52, 449
BalI TGGCCA 1 cut(s) 432
BanI GGYRCC 1 cut(s) 186
BanII GRGCYC 3 cut(s) 258, 270, 277
BauI CACGAG 1 cut(s) 251
Bbv12I GWGCWC 2 cut(s) 258, 270
BbvI GCAGC 1 cut(s) 195
BccI CCATC 3 cut(s) 346, 518, 827
BceAI ACGGC 5 cut(s) 30, 129, 356, 476, 605
BciVI GTATCC 1 cut(s) 546
BfuAI ACCTGC 1 cut(s) 288
BfuI GTATCC 1 cut(s) 546
BisI GCNGC 4 cut(s) 27, 185, 209, 231
BlsI GCNGC 4 cut(s) 28, 186, 210, 232
Bme18I GGWCC 2 cut(s) 52, 449
BmgBI CACGTC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 52, 449
BmiI GGNNCC 2 cut(s) 54, 188
BmsI GCATC 3 cut(s) 237, 332, 849
Bpu10I CCTNAGC 1 cut(s) 269
BsaJI CCNNGG 3 cut(s) 231, 652, 678
BsaWI WCCGGW 2 cut(s) 604, 739
Bse1I ACTGG 1 cut(s) 334
Bse3DI GCAATG 1 cut(s) 783
BseAI TCCGGA 1 cut(s) 739
BseDI CCNNGG 3 cut(s) 231, 652, 678
BseGI GGATG 3 cut(s) 323, 510, 637
BseMI GCAATG 1 cut(s) 783
BseMII CTCAG 3 cut(s) 283, 333, 499
BseNI ACTGG 1 cut(s) 334
BseXI GCAGC 1 cut(s) 195
BsgI GTGCAG 1 cut(s) 443
Bsh1236I CGCG 4 cut(s) 197, 199, 233, 791
BshFI GGCC 3 cut(s) 29, 432, 717
BshNI GGYRCC 1 cut(s) 186
BsiHKAI GWGCWC 2 cut(s) 258, 270
BsiSI CCGG 4 cut(s) 50, 105, 605, 740
BsiWI CGTACG 1 cut(s) 63
BslFI GGGAC 1 cut(s) 634
BsmFI GGGAC 1 cut(s) 634
BsmI GAATGC 1 cut(s) 232
BsnI GGCC 3 cut(s) 29, 432, 717
Bsp1286I GDGCHC 3 cut(s) 258, 270, 277
Bsp13I TCCGGA 1 cut(s) 739
Bsp1407I TGTACA 2 cut(s) 72, 375
Bsp143I GATC 2 cut(s) 165, 691
BspANI GGCC 3 cut(s) 29, 432, 717
BspCNI CTCAG 3 cut(s) 282, 334, 498
BspEI TCCGGA 1 cut(s) 739
BspFNI CGCG 4 cut(s) 197, 199, 233, 791
BspLI GGNNCC 2 cut(s) 54, 188
BspMI ACCTGC 1 cut(s) 288
BspPI GGATC 1 cut(s) 686
BspQI GCTCTTC 1 cut(s) 263
BspT107I GGYRCC 1 cut(s) 186
BsrDI GCAATG 1 cut(s) 783
BsrGI TGTACA 2 cut(s) 72, 375
BsrI ACTGG 1 cut(s) 334
BssECI CCNNGG 3 cut(s) 231, 652, 678
BssMI GATC 2 cut(s) 165, 691
BssSI CACGAG 1 cut(s) 251
BssT1I CCWWGG 1 cut(s) 678
Bst2BI CACGAG 1 cut(s) 251
Bst4CI ACNGT 1 cut(s) 506
Bst6I CTCTTC 1 cut(s) 263
BstAUI TGTACA 2 cut(s) 72, 375
BstC8I GCNNGC 1 cut(s) 19
BstDEI CTNAG 3 cut(s) 269, 342, 485
BstDSI CCRYGG 2 cut(s) 231, 652
BstF5I GGATG 3 cut(s) 323, 510, 637
BstFNI CGCG 4 cut(s) 197, 199, 233, 791
BstHHI GCGC 3 cut(s) 199, 762, 793
BstKTI GATC 2 cut(s) 168, 694
BstMBI GATC 2 cut(s) 165, 691
BstMWI GCNNNNNNNGC 5 cut(s) 23, 35, 55, 205, 217
BstNSI RCATGY 1 cut(s) 596
BstUI CGCG 4 cut(s) 197, 199, 233, 791
BstV1I GCAGC 1 cut(s) 195
BstXI CCANNNNNNTGG 1 cut(s) 440
BsuI GTATCC 1 cut(s) 546
BsuRI GGCC 3 cut(s) 29, 432, 717
BtgI CCRYGG 2 cut(s) 231, 652
BtrI CACGTC 1 cut(s) 70
BtsCI GGATG 3 cut(s) 323, 510, 637
BtsI GCAGTG 2 cut(s) 455, 718
BtsIMutI CAGTG 4 cut(s) 327, 455, 511, 718
BveI ACCTGC 1 cut(s) 288
Cac8I GCNNGC 1 cut(s) 19
CfoI GCGC 3 cut(s) 199, 762, 793
Cfr13I GGNCC 2 cut(s) 52, 449
Cfr42I CCGCGG 1 cut(s) 234
Csp6I GTAC 4 cut(s) 64, 73, 376, 745
CviAII CATG 4 cut(s) 127, 221, 593, 620
CviQI GTAC 4 cut(s) 64, 73, 376, 745
DdeI CTNAG 3 cut(s) 269, 342, 485
DpnI GATC 2 cut(s) 167, 693
DpnII GATC 2 cut(s) 165, 691
DraI TTTAAA 1 cut(s) 387
EaeI YGGCCR 2 cut(s) 27, 430
Eam1104I CTCTTC 1 cut(s) 263
EarI CTCTTC 1 cut(s) 263
EciI GGCGGA 1 cut(s) 131
Ecl136II GAGCTC 2 cut(s) 256, 268
Eco130I CCWWGG 1 cut(s) 678
Eco24I GRGCYC 3 cut(s) 258, 270, 277
Eco47I GGWCC 2 cut(s) 52, 449
Eco53kI GAGCTC 2 cut(s) 256, 268
EcoICRI GAGCTC 2 cut(s) 256, 268
EcoT14I CCWWGG 1 cut(s) 678
EcoT38I GRGCYC 3 cut(s) 258, 270, 277
ErhI CCWWGG 1 cut(s) 678
FaeI CATG 4 cut(s) 130, 224, 596, 623
FaqI GGGAC 1 cut(s) 634
FatI CATG 4 cut(s) 126, 220, 592, 619
FauI CCCGC 5 cut(s) 10, 54, 63, 80, 149
Fnu4HI GCNGC 4 cut(s) 27, 185, 209, 231
FokI GGATG 3 cut(s) 310, 497, 644
FriOI GRGCYC 3 cut(s) 258, 270, 277
Fsp4HI GCNGC 4 cut(s) 27, 185, 209, 231
FspI TGCGCA 1 cut(s) 761
GlaI GCGC 3 cut(s) 198, 761, 792
GluI GCNGC 4 cut(s) 27, 185, 209, 231
HaeIII GGCC 3 cut(s) 29, 432, 717
HapII CCGG 4 cut(s) 50, 105, 605, 740
HhaI GCGC 3 cut(s) 199, 762, 793
Hin1II CATG 4 cut(s) 130, 224, 596, 623
Hin6I GCGC 3 cut(s) 197, 760, 791
HinP1I GCGC 3 cut(s) 197, 760, 791
HincII GTYRAC 2 cut(s) 549, 643
HindII GTYRAC 2 cut(s) 549, 643
HinfI GANTC 1 cut(s) 528
HpaII CCGG 4 cut(s) 50, 105, 605, 740
HphI GGTGA 2 cut(s) 269, 715
Hpy166II GTNNAC 5 cut(s) 73, 204, 376, 549, 643
Hpy188I TCNGA 3 cut(s) 343, 488, 832
Hpy188III TCNNGA 2 cut(s) 312, 740
Hpy8I GTNNAC 5 cut(s) 73, 204, 376, 549, 643
Hpy99I CGWCG 3 cut(s) 64, 71, 178
HpyAV CCTTC 2 cut(s) 145, 700
HpyCH4III ACNGT 1 cut(s) 506
HpyCH4IV ACGT 4 cut(s) 9, 62, 69, 176
HpyCH4V TGCA 4 cut(s) 136, 250, 460, 723
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 35, 55, 205, 217
HpyF3I CTNAG 3 cut(s) 269, 342, 485
HpySE526I ACGT 4 cut(s) 9, 62, 69, 176
Hsp92II CATG 4 cut(s) 130, 224, 596, 623
HspAI GCGC 3 cut(s) 197, 760, 791
Kpn2I TCCGGA 1 cut(s) 739
KspI CCGCGG 1 cut(s) 234
Kzo9I GATC 2 cut(s) 165, 691
LguI GCTCTTC 1 cut(s) 263
LmnI GCTCC 1 cut(s) 320
Lsp1109I GCAGC 1 cut(s) 195
LweI GCATC 3 cut(s) 237, 332, 849
MaeII ACGT 4 cut(s) 9, 62, 69, 176
MaeIII GTNAC 2 cut(s) 10, 109
MalI GATC 2 cut(s) 167, 693
MboI GATC 2 cut(s) 165, 691
MboII GAAGA 3 cut(s) 250, 491, 826
MfeI CAATTG 1 cut(s) 379
MhlI GDGCHC 3 cut(s) 258, 270, 277
MlsI TGGCCA 1 cut(s) 432
MluCI AATT 3 cut(s) 379, 402, 636
MluNI TGGCCA 1 cut(s) 432
MlyI GAGTC 1 cut(s) 537
MmeI TCCRAC 2 cut(s) 123, 421
MnlI CCTC 6 cut(s) 76, 124, 406, 622, 707, 737
Mox20I TGGCCA 1 cut(s) 432
MroI TCCGGA 1 cut(s) 739
MroXI GAANNNNTTC 1 cut(s) 735
MscI TGGCCA 1 cut(s) 432
MseI TTAA 1 cut(s) 386
MslI CAYNNNNRTG 3 cut(s) 131, 225, 282
Msp20I TGGCCA 1 cut(s) 432
MspA1I CMGCKG 2 cut(s) 233, 600
MspI CCGG 4 cut(s) 50, 105, 605, 740
MunI CAATTG 1 cut(s) 379
Mva1269I GAATGC 1 cut(s) 232
MvnI CGCG 4 cut(s) 197, 199, 233, 791
MwoI GCNNNNNNNGC 5 cut(s) 23, 35, 55, 205, 217
NdeII GATC 2 cut(s) 165, 691
NlaIII CATG 4 cut(s) 130, 224, 596, 623
NlaIV GGNNCC 2 cut(s) 54, 188
NmuCI GTSAC 2 cut(s) 10, 109
NsbI TGCGCA 1 cut(s) 761
NspI RCATGY 1 cut(s) 596
OliI CACNNNNGTG 1 cut(s) 282
PaqCI CACCTGC 1 cut(s) 288
PciSI GCTCTTC 1 cut(s) 263
PctI GAATGC 1 cut(s) 232
PdmI GAANNNNTTC 1 cut(s) 735
Pfl23II CGTACG 1 cut(s) 63
PkrI GCNGC 4 cut(s) 28, 186, 210, 232
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
Psp124BI GAGCTC 2 cut(s) 258, 270
PspLI CGTACG 1 cut(s) 63
PspN4I GGNNCC 2 cut(s) 54, 188
PspPI GGNCC 2 cut(s) 52, 449
PvuII CAGCTG 1 cut(s) 600
RsaI GTAC 4 cut(s) 65, 74, 377, 746
RsaNI GTAC 4 cut(s) 64, 73, 376, 745
RseI CAYNNNNRTG 3 cut(s) 131, 225, 282
SacI GAGCTC 2 cut(s) 258, 270
SacII CCGCGG 1 cut(s) 234
SapI GCTCTTC 1 cut(s) 263
SaqAI TTAA 1 cut(s) 386
SatI GCNGC 4 cut(s) 27, 185, 209, 231
Sau3AI GATC 2 cut(s) 165, 691
Sau96I GGNCC 2 cut(s) 52, 449
SchI GAGTC 1 cut(s) 537
SduI GDGCHC 3 cut(s) 258, 270, 277
SfaNI GCATC 3 cut(s) 237, 332, 849
Sfr303I CCGCGG 1 cut(s) 234
SgrBI CCGCGG 1 cut(s) 234
SinI GGWCC 2 cut(s) 52, 449
SmiMI CAYNNNNRTG 3 cut(s) 131, 225, 282
SmlI CTYRAG 1 cut(s) 868
SmoI CTYRAG 1 cut(s) 868
Sse9I AATT 3 cut(s) 379, 402, 636
SspI AATATT 1 cut(s) 292
SstI GAGCTC 2 cut(s) 258, 270
StyI CCWWGG 1 cut(s) 678
TaaI ACNGT 1 cut(s) 506
TaiI ACGT 4 cut(s) 12, 65, 72, 179
TaqI TCGA 2 cut(s) 561, 729
TasI AATT 3 cut(s) 379, 402, 636
TatI WGTACW 3 cut(s) 72, 375, 744
TauI GCSGC 3 cut(s) 29, 187, 233
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TscAI CASTG 4 cut(s) 334, 462, 511, 725
TseFI GTSAC 2 cut(s) 10, 109
TseI GCWGC 1 cut(s) 208
Tsp45I GTSAC 2 cut(s) 10, 109
TspDTI ATGAA 5 cut(s) 250, 414, 608, 648, 757
TspGWI ACGGA 1 cut(s) 669
TspRI CASTG 4 cut(s) 334, 462, 511, 725
VpaK11BI GGWCC 2 cut(s) 52, 449
XceI RCATGY 1 cut(s) 596
XmnI GAANNNNTTC 1 cut(s) 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.