Prupe.8G200500_v2.0.a1

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0018519
Physical Location & Seq
Forward (+)
18973368 .. 18974801
1434 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G200500.1

Sequence Viewer

Length: 1320 bp
ATGGAGAACGTGAAACTAGTTGAGAAGGTTGTAATTGCACCAGAAAAACCGAAACAGCCCCGGAGACTTTTCTTATCCAACATAGACCTGGGCCTTGTTGTGTACCAAGAGACGGTTATCTTTTTTGATCCTCCAAGCAATGGGATGAGCTTCTCCGAGGCTTATCATAGCTTGTTTCGCACACTCGGTCCCTTGCTAGCTGAATATGATTTCTTAGCCGGGAGGCTTGTGCCAAGTTTGGAAGACAGCAATCGCTTTGAAATAGAATGCAACGGTGCAGGTGTTGTTGTTGCTGCAGCTAGGACAGATACCAAGCTGGATGAACTTGGTGAGCTTTTGGTACCCAAGAAAGAGTTCAGGCAGTTTGTTGCTTTCTTGCTACAAGAGGATGAGGAAATGGATCTCAAAGACATGCCCCTTGTGTCGTTTCAGTTCACTCAGCTTGGATGTGGAAGCCTAGTGTTTGCCTCCAGGTTCAATCATTGCGCAGTCGACGGGGTTGCAGTCCGGGAGTTTGAGGCAAATTTGGCAGCTCTAACTCGCGGTGGTAACTTAGTCATTCAACCAAATGCAGATCGAATAATGTTCAAAGCTCGAAACCCTCCAAACATCAGTTTCCCACATTTTGAGTACTCAAAAGCCACTGATAGAACTGGCATATTCACTGTCCGTGGTATGAGTGGCACCAACATGAAACTATCCACAACTCTTAACCCAACGCGCCTCATCTATTTGTCCCAAGATCGTGTTGCCAGCTTGAAGAAGGCAGCCCTTAAAGATGGGAGGTTGAAGAGCTGCACTAGTTTTCAAGTTGTTGCAGCAATGACTTGGAAGGCAAGGAGCATTGCGGTTGATATGCCGGATGAAAAAATTTCAACTATTTTGATTCCAGTCGATGTTCGCAAACGAGTTGTGCCTCCAGCCCCGCCTGGATTTGCTGGAAATGCATTGGTTCCTGCCTTTGCACATGCAACTGTGAAGGAGCTTAAGGAGGAAGATGACTCTTCCCTTGTGAGGAAGGTGCAAGAAGGGGTAGAGAGATTGGATGATGAGTATGTGAAGTCAGGGATAGATTGGTTAGAGGTGAATAAAGGGGTACCTTGTGAAGAAAATAGCTTCTCACTGGTGTCATGGTGGAAATTAGGGATAGAGCATGGTGAATTCTCATGGGGAAAAGTTAAGTGCGCCACGTCGGTTCTACTCAAGCCAGGCCTTGTCATGCTGCTGCTAGGACCGGAAGGAAAGGGAGGCCTCAGCATATGCCTGGAACTACCTGATGATCAAATGGAGTTGTTCTGCAGGTTGATGCTGGGCGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
Transferase

Protein Analysis

440

Amino Acids

48.68

Weight (kDa)

5.55

Isoelectric Point (pI)

33.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018519)

Species Orthologous Gene IDs
prunus_persica Prupe.8G200500_v2.0.a1
rosa_laevigata RLG00000012744
rosa_multiflora Rmu_sc0000614.1_g000006
rosa_roxburghii Rroxscaffold_7G00184700
rosa_samantha Rh6AG276100 Rh6AG276300 Rh6BG276400 Rh6BG276500 Rh6CG278500 Rh6DG270900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 269
Acc16I TGCGCA 1 cut(s) 487
Acc36I ACCTGC 2 cut(s) 269, 1290
Acc65I GGTACC 2 cut(s) 340, 1096
AccB1I GGYRCC 3 cut(s) 340, 683, 1096
AccB7I CCANNNNNTGG 1 cut(s) 140
AccI GTMKAC 1 cut(s) 492
AccII CGCG 2 cut(s) 543, 721
AciI CCGC 3 cut(s) 543, 848, 926
AclWI GGATC 2 cut(s) 122, 408
AcsI RAATTY 3 cut(s) 523, 870, 1160
AfaI GTAC 4 cut(s) 104, 342, 632, 1098
AfiI CCNNNNNNNGG 3 cut(s) 112, 140, 1014
AflII CTTAAG 1 cut(s) 986
AgsI TTSAA 8 cut(s) 260, 478, 563, 589, 760, 790, 809, 876
AhlI ACTAGT 2 cut(s) 16, 800
AjiI CACGTC 1 cut(s) 1191
AjnI CCWGG 5 cut(s) 87, 470, 928, 1207, 1263
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
Alw26I GTCTC 2 cut(s) 58, 104
AlwI GGATC 2 cut(s) 122, 408
AoxI GGCC 3 cut(s) 91, 1210, 1249
ApeKI GCWGC 8 cut(s) 293, 296, 530, 767, 795, 818, 1222, 1225
ApoI RAATTY 3 cut(s) 523, 870, 1160
Asp700I GAANNNNTTC 1 cut(s) 353
Asp718I GGTACC 2 cut(s) 340, 1096
AspLEI GCGC 3 cut(s) 488, 723, 1187
AspS9I GGNCC 3 cut(s) 91, 188, 1232
AsuC2I CCSGG 3 cut(s) 61, 220, 509
AsuHPI GGTGA 3 cut(s) 341, 1096, 1169
AsuNHI GCTAGC 1 cut(s) 196
AvaII GGWCC 2 cut(s) 188, 1232
BanI GGYRCC 3 cut(s) 340, 683, 1096
BbsI GAAGAC 1 cut(s) 249
BbvCI CCTCAGC 1 cut(s) 1253
BbvI GCAGC 8 cut(s) 280, 308, 542, 779, 782, 830, 1209, 1212
BccI CCATC 1 cut(s) 773
BcgI CGANNNNNNTGC 2 cut(s) 482, 516
BciT130I CCWGG 5 cut(s) 89, 472, 930, 1209, 1265
BclI TGATCA 1 cut(s) 1279
BcnI CCSGG 3 cut(s) 61, 220, 509
BcoDI GTCTC 2 cut(s) 58, 104
BcuI ACTAGT 2 cut(s) 16, 800
BfaI CTAG 6 cut(s) 17, 197, 300, 458, 801, 1229
BfmI CTRYAG 2 cut(s) 294, 1297
BfrI CTTAAG 1 cut(s) 986
BfuAI ACCTGC 2 cut(s) 269, 1290
BisI GCNGC 8 cut(s) 294, 297, 531, 768, 796, 819, 1223, 1226
BlsI GCNGC 8 cut(s) 295, 298, 532, 769, 797, 820, 1224, 1227
BmcAI AGTACT 1 cut(s) 632
Bme1390I CCNGG 8 cut(s) 61, 89, 220, 472, 509, 930, 1209, 1265
Bme18I GGWCC 2 cut(s) 188, 1232
BmgBI CACGTC 1 cut(s) 1191
BmgT120I GGNCC 3 cut(s) 91, 188, 1232
BmiI GGNNCC 5 cut(s) 190, 342, 685, 954, 1098
BmrFI CCNGG 8 cut(s) 61, 89, 220, 472, 509, 930, 1209, 1265
BmsI GCATC 1 cut(s) 1296
BmtI GCTAGC 1 cut(s) 200
BpiI GAAGAC 1 cut(s) 249
BpmI CTGGAG 2 cut(s) 454, 903
Bpu10I CCTNAGC 1 cut(s) 1253
BpuEI CTTGAG 1 cut(s) 1187
BpuMI CCSGG 3 cut(s) 61, 220, 509
BsaJI CCNNGG 4 cut(s) 59, 88, 156, 670
BsaWI WCCGGW 1 cut(s) 1234
Bsc4I CCNNNNNNNGG 3 cut(s) 112, 140, 1014
Bse1I ACTGG 3 cut(s) 658, 890, 1128
Bse3DI GCAATG 4 cut(s) 145, 481, 828, 843
BseBI CCWGG 5 cut(s) 89, 472, 930, 1209, 1265
BseDI CCNNGG 4 cut(s) 59, 88, 156, 670
BseGI GGATG 6 cut(s) 150, 325, 394, 452, 868, 1051
BseLI CCNNNNNNNGG 3 cut(s) 112, 140, 1014
BseMI GCAATG 4 cut(s) 145, 481, 828, 843
BseMII CTCAG 2 cut(s) 452, 1267
BseNI ACTGG 3 cut(s) 658, 890, 1128
BseXI GCAGC 8 cut(s) 280, 308, 542, 779, 782, 830, 1209, 1212
BseYI CCCAGC 1 cut(s) 1309
BsgI GTGCAG 2 cut(s) 297, 781
Bsh1236I CGCG 2 cut(s) 543, 721
BshFI GGCC 3 cut(s) 93, 1212, 1251
BshNI GGYRCC 3 cut(s) 340, 683, 1096
BsiSI CCGG 5 cut(s) 61, 219, 508, 860, 1235
BslFI GGGAC 2 cut(s) 174, 721
BslI CCNNNNNNNGG 3 cut(s) 112, 140, 1014
BsmAI GTCTC 2 cut(s) 58, 104
BsmBI CGTCTC 1 cut(s) 104
BsmFI GGGAC 2 cut(s) 174, 721
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 3 cut(s) 93, 1212, 1251
Bsp143I GATC 5 cut(s) 127, 400, 574, 742, 1279
BspACI CCGC 3 cut(s) 543, 848, 926
BspANI GGCC 3 cut(s) 93, 1212, 1251
BspCNI CTCAG 2 cut(s) 451, 1266
BspFNI CGCG 2 cut(s) 543, 721
BspLI GGNNCC 5 cut(s) 190, 342, 685, 954, 1098
BspMAI CTGCAG 2 cut(s) 298, 1301
BspMI ACCTGC 2 cut(s) 269, 1290
BspOI GCTAGC 1 cut(s) 200
BspPI GGATC 2 cut(s) 122, 408
BspQI GCTCTTC 1 cut(s) 785
BspT107I GGYRCC 3 cut(s) 340, 683, 1096
BspTI CTTAAG 1 cut(s) 986
BsrDI GCAATG 4 cut(s) 145, 481, 828, 843
BsrI ACTGG 3 cut(s) 658, 890, 1128
BssECI CCNNGG 4 cut(s) 59, 88, 156, 670
BssMI GATC 5 cut(s) 127, 400, 574, 742, 1279
Bst2UI CCWGG 5 cut(s) 89, 472, 930, 1209, 1265
Bst4CI ACNGT 4 cut(s) 115, 275, 667, 976
Bst6I CTCTTC 2 cut(s) 785, 1009
BstAFI CTTAAG 1 cut(s) 986
BstC8I GCNNGC 2 cut(s) 198, 754
BstDEI CTNAG 4 cut(s) 214, 438, 553, 1253
BstDSI CCRYGG 1 cut(s) 670
BstF5I GGATG 6 cut(s) 150, 325, 394, 452, 868, 1051
BstFNI CGCG 2 cut(s) 543, 721
BstHHI GCGC 3 cut(s) 488, 723, 1187
BstKTI GATC 5 cut(s) 130, 403, 577, 745, 1282
BstMAI GTCTC 2 cut(s) 58, 104
BstMBI GATC 5 cut(s) 127, 400, 574, 742, 1279
BstMWI GCNNNNNNNGC 3 cut(s) 177, 527, 944
BstNI CCWGG 5 cut(s) 89, 472, 930, 1209, 1265
BstNSI RCATGY 2 cut(s) 415, 971
BstSCI CCNGG 8 cut(s) 59, 87, 218, 470, 507, 928, 1207, 1263
BstSFI CTRYAG 2 cut(s) 294, 1297
BstUI CGCG 2 cut(s) 543, 721
BstV1I GCAGC 8 cut(s) 280, 308, 542, 779, 782, 830, 1209, 1212
BstV2I GAAGAC 1 cut(s) 249
BstX2I RGATCY 1 cut(s) 400
BstYI RGATCY 1 cut(s) 400
BsuRI GGCC 3 cut(s) 93, 1212, 1251
BtgI CCRYGG 1 cut(s) 670
BtrI CACGTC 1 cut(s) 1191
BtsCI GGATG 6 cut(s) 150, 325, 394, 452, 868, 1051
BtsIMutI CAGTG 3 cut(s) 642, 663, 1121
BveI ACCTGC 2 cut(s) 269, 1290
Cac8I GCNNGC 2 cut(s) 198, 754
CfoI GCGC 3 cut(s) 488, 723, 1187
Cfr13I GGNCC 3 cut(s) 91, 188, 1232
Csp6I GTAC 4 cut(s) 103, 341, 631, 1097
CviAII CATG 7 cut(s) 412, 691, 968, 1131, 1154, 1167, 1219
CviQI GTAC 4 cut(s) 103, 341, 631, 1097
DdeI CTNAG 4 cut(s) 214, 438, 553, 1253
DpnI GATC 5 cut(s) 129, 402, 576, 744, 1281
DpnII GATC 5 cut(s) 127, 400, 574, 742, 1279
Eam1104I CTCTTC 2 cut(s) 785, 1009
EarI CTCTTC 2 cut(s) 785, 1009
Eco147I AGGCCT 2 cut(s) 1212, 1251
Eco47I GGWCC 2 cut(s) 188, 1232
EcoRI GAATTC 1 cut(s) 1160
EcoRII CCWGG 5 cut(s) 87, 470, 928, 1207, 1263
EcoT22I ATGCAT 1 cut(s) 949
Esp3I CGTCTC 1 cut(s) 104
FaeI CATG 7 cut(s) 415, 694, 971, 1134, 1157, 1170, 1222
FaqI GGGAC 2 cut(s) 174, 721
FatI CATG 7 cut(s) 411, 690, 967, 1130, 1153, 1166, 1218
FauI CCCGC 1 cut(s) 933
FauNDI CATATG 1 cut(s) 1259
FbaI TGATCA 1 cut(s) 1279
FblI GTMKAC 1 cut(s) 492
Fnu4HI GCNGC 8 cut(s) 294, 297, 531, 768, 796, 819, 1223, 1226
FokI GGATG 6 cut(s) 157, 332, 401, 459, 875, 1058
Fsp4HI GCNGC 8 cut(s) 294, 297, 531, 768, 796, 819, 1223, 1226
FspBI CTAG 6 cut(s) 17, 197, 300, 458, 801, 1229
FspI TGCGCA 1 cut(s) 487
GlaI GCGC 3 cut(s) 487, 722, 1186
GluI GCNGC 8 cut(s) 294, 297, 531, 768, 796, 819, 1223, 1226
GsaI CCCAGC 1 cut(s) 1313
GsuI CTGGAG 2 cut(s) 454, 903
HaeIII GGCC 3 cut(s) 93, 1212, 1251
HapII CCGG 5 cut(s) 61, 219, 508, 860, 1235
HhaI GCGC 3 cut(s) 488, 723, 1187
Hin1II CATG 7 cut(s) 415, 694, 971, 1134, 1157, 1170, 1222
Hin6I GCGC 3 cut(s) 486, 721, 1185
HinP1I GCGC 3 cut(s) 486, 721, 1185
HincII GTYRAC 1 cut(s) 493
HindII GTYRAC 1 cut(s) 493
HinfI GANTC 2 cut(s) 886, 1001
HpaII CCGG 5 cut(s) 61, 219, 508, 860, 1235
HphI GGTGA 3 cut(s) 341, 1096, 1169
Hpy166II GTNNAC 3 cut(s) 103, 435, 493
Hpy188I TCNGA 1 cut(s) 157
Hpy8I GTNNAC 3 cut(s) 103, 435, 493
Hpy99I CGWCG 2 cut(s) 497, 1195
HpyAV CCTTC 7 cut(s) 19, 757, 826, 973, 1012, 1022, 1232
HpyCH4III ACNGT 4 cut(s) 115, 275, 667, 976
HpyCH4IV ACGT 2 cut(s) 9, 1190
HpyF10VI GCNNNNNNNGC 3 cut(s) 177, 527, 944
HpyF3I CTNAG 4 cut(s) 214, 438, 553, 1253
HpySE526I ACGT 2 cut(s) 9, 1190
Hsp92II CATG 7 cut(s) 415, 694, 971, 1134, 1157, 1170, 1222
HspAI GCGC 3 cut(s) 486, 721, 1185
KpnI GGTACC 2 cut(s) 344, 1100
Ksp22I TGATCA 1 cut(s) 1279
Kzo9I GATC 5 cut(s) 127, 400, 574, 742, 1279
LguI GCTCTTC 1 cut(s) 785
LmnI GCTCC 2 cut(s) 840, 982
Lsp1109I GCAGC 8 cut(s) 280, 308, 542, 779, 782, 830, 1209, 1212
LweI GCATC 1 cut(s) 1296
MaeI CTAG 6 cut(s) 17, 197, 300, 458, 801, 1229
MaeII ACGT 2 cut(s) 9, 1190
MaeIII GTNAC 1 cut(s) 548
MalI GATC 5 cut(s) 129, 402, 576, 744, 1281
MboI GATC 5 cut(s) 127, 400, 574, 742, 1279
MboII GAAGA 6 cut(s) 254, 772, 802, 996, 1007, 1118
MflI RGATCY 1 cut(s) 400
MluCI AATT 5 cut(s) 33, 523, 870, 1139, 1160
MlyI GAGTC 1 cut(s) 995
MmeI TCCRAC 1 cut(s) 102
Mph1103I ATGCAT 1 cut(s) 949
MroXI GAANNNNTTC 1 cut(s) 353
MseI TTAA 4 cut(s) 711, 774, 987, 1179
MslI CAYNNNNRTG 1 cut(s) 689
MspCI CTTAAG 1 cut(s) 986
MspI CCGG 5 cut(s) 61, 219, 508, 860, 1235
MspR9I CCNGG 8 cut(s) 61, 89, 220, 472, 509, 930, 1209, 1265
Mva1269I GAATGC 1 cut(s) 272
MvaI CCWGG 5 cut(s) 89, 472, 930, 1209, 1265
MvnI CGCG 2 cut(s) 543, 721
MwoI GCNNNNNNNGC 3 cut(s) 177, 527, 944
NciI CCSGG 3 cut(s) 61, 220, 509
NdeI CATATG 1 cut(s) 1259
NdeII GATC 5 cut(s) 127, 400, 574, 742, 1279
NheI GCTAGC 1 cut(s) 196
NlaIII CATG 7 cut(s) 415, 694, 971, 1134, 1157, 1170, 1222
NlaIV GGNNCC 5 cut(s) 190, 342, 685, 954, 1098
NsbI TGCGCA 1 cut(s) 487
NsiI ATGCAT 1 cut(s) 949
NspI RCATGY 2 cut(s) 415, 971
PaqCI CACCTGC 1 cut(s) 269
PceI AGGCCT 2 cut(s) 1212, 1251
PciSI GCTCTTC 1 cut(s) 785
PctI GAATGC 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 353
PfeI GAWTC 1 cut(s) 886
PflMI CCANNNNNTGG 1 cut(s) 140
PfoI TCCNGGA 1 cut(s) 507
PkrI GCNGC 8 cut(s) 295, 298, 532, 769, 797, 820, 1224, 1227
PleI GAGTC 1 cut(s) 995
PpsI GAGTC 1 cut(s) 995
Psp6I CCWGG 5 cut(s) 87, 470, 928, 1207, 1263
PspFI CCCAGC 1 cut(s) 1309
PspGI CCWGG 5 cut(s) 87, 470, 928, 1207, 1263
PspN4I GGNNCC 5 cut(s) 190, 342, 685, 954, 1098
PspPI GGNCC 3 cut(s) 91, 188, 1232
PstI CTGCAG 2 cut(s) 298, 1301
PsuI RGATCY 1 cut(s) 400
RsaI GTAC 4 cut(s) 104, 342, 632, 1098
RsaNI GTAC 4 cut(s) 103, 341, 631, 1097
RseI CAYNNNNRTG 1 cut(s) 689
SalI GTCGAC 1 cut(s) 491
SapI GCTCTTC 1 cut(s) 785
SaqAI TTAA 4 cut(s) 711, 774, 987, 1179
SatI GCNGC 8 cut(s) 294, 297, 531, 768, 796, 819, 1223, 1226
Sau3AI GATC 5 cut(s) 127, 400, 574, 742, 1279
Sau96I GGNCC 3 cut(s) 91, 188, 1232
ScaI AGTACT 1 cut(s) 632
SchI GAGTC 1 cut(s) 995
ScrFI CCNGG 8 cut(s) 61, 89, 220, 472, 509, 930, 1209, 1265
SfaNI GCATC 1 cut(s) 1296
SfcI CTRYAG 2 cut(s) 294, 1297
SinI GGWCC 2 cut(s) 188, 1232
SmiMI CAYNNNNRTG 1 cut(s) 689
SmlI CTYRAG 2 cut(s) 986, 1202
SmoI CTYRAG 2 cut(s) 986, 1202
SpeI ACTAGT 2 cut(s) 16, 800
Sse9I AATT 5 cut(s) 33, 523, 870, 1139, 1160
SseBI AGGCCT 2 cut(s) 1212, 1251
SsiI CCGC 3 cut(s) 543, 848, 926
SspMI CTAG 6 cut(s) 17, 197, 300, 458, 801, 1229
StuI AGGCCT 2 cut(s) 1212, 1251
StyD4I CCNGG 8 cut(s) 59, 87, 218, 470, 507, 928, 1207, 1263
TaaI ACNGT 4 cut(s) 115, 275, 667, 976
TaiI ACGT 2 cut(s) 12, 1193
TaqI TCGA 4 cut(s) 492, 577, 595, 894
TaqII GACCGA 1 cut(s) 176
TasI AATT 5 cut(s) 33, 523, 870, 1139, 1160
TatI WGTACW 1 cut(s) 630
TfiI GAWTC 1 cut(s) 886
Tru1I TTAA 4 cut(s) 711, 774, 987, 1179
Tru9I TTAA 4 cut(s) 711, 774, 987, 1179
TscAI CASTG 3 cut(s) 649, 670, 1128
TseI GCWGC 8 cut(s) 293, 296, 530, 767, 795, 818, 1222, 1225
TspDTI ATGAA 3 cut(s) 336, 707, 879
TspGWI ACGGA 1 cut(s) 659
TspRI CASTG 3 cut(s) 649, 670, 1128
Van91I CCANNNNNTGG 1 cut(s) 140
Vha464I CTTAAG 1 cut(s) 986
VpaK11BI GGWCC 2 cut(s) 188, 1232
XapI RAATTY 3 cut(s) 523, 870, 1160
XceI RCATGY 2 cut(s) 415, 971
XcmI CCANNNNNNNNNTGG 1 cut(s) 85
XmiI GTMKAC 1 cut(s) 492
XmnI GAANNNNTTC 1 cut(s) 353
XspI CTAG 6 cut(s) 17, 197, 300, 458, 801, 1229
ZrmI AGTACT 1 cut(s) 632
Zsp2I ATGCAT 1 cut(s) 949
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.