Rroxscaffold_7G00184700

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0018519
Physical Location & Seq
Forward (+)
24010318 .. 24011199
882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00184700.1

Sequence Viewer

Length: 405 bp
ATGGAGAATCTGGAGCTAGTTGAGAAAGATGTGATTGTACCAGACAAGCCAACACAGCGCCGGACCGAAACCAAGTTGACCGAATTTGATGAGCTTACGATACCCAAGAAGGAGTACAAGAAGTTGTTGCTTTCTTGCAAGATGAGGATGAAGAAATGGAGACCAAAGACAAGCCCCCCTCTTGTCTATACCGCTCGTAACCCTCCAAAGATCAGATACCCACATATCGAGTACTCAAAAGCCACTGACACAACTAACCTCACCGTTCGCCGTATGAGTGACCCCAACATGAAGTTATGCACAACAGATAAAACCATCTCACCTATTTGTACCAACTCCCAACAGAAAATTGCCAGCTTAAAGGAGAAAGCCCTTAAAGATGGGGCAGTTGAAGAGCTGCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
Transferase

Protein Analysis

134

Amino Acids

15.57

Weight (kDa)

9.52

Isoelectric Point (pI)

48.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018519)

Species Orthologous Gene IDs
prunus_persica Prupe.8G200500_v2.0.a1
rosa_laevigata RLG00000012744
rosa_multiflora Rmu_sc0000614.1_g000006
rosa_roxburghii Rroxscaffold_7G00184700
rosa_samantha Rh6AG276100 Rh6AG276300 Rh6BG276400 Rh6BG276500 Rh6CG278500 Rh6DG270900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 194
AciI CCGC 1 cut(s) 192
AcsI RAATTY 1 cut(s) 83
AfaI GTAC 4 cut(s) 39, 116, 233, 331
AgsI TTSAA 1 cut(s) 392
AluBI AGCT 4 cut(s) 16, 94, 357, 397
AluI AGCT 4 cut(s) 16, 94, 357, 397
Alw26I GTCTC 1 cut(s) 154
ApeKI GCWGC 1 cut(s) 397
ApoI RAATTY 1 cut(s) 83
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 63
AsuHPI GGTGA 2 cut(s) 253, 312
AvaII GGWCC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 384
BccI CCATC 2 cut(s) 323, 374
BceAI ACGGC 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 17
BfmI CTRYAG 1 cut(s) 398
BfoI RGCGCY 1 cut(s) 61
BisI GCNGC 1 cut(s) 398
BlsI GCNGC 1 cut(s) 399
BmcAI AGTACT 1 cut(s) 233
Bme18I GGWCC 1 cut(s) 63
BmgT120I GGNCC 1 cut(s) 63
BpmI CTGGAG 1 cut(s) 32
BsaI GGTCTC 1 cut(s) 154
BseGI GGATG 1 cut(s) 153
BseXI GCAGC 1 cut(s) 384
BsiSI CCGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 154
Bso31I GGTCTC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 210
BspACI CCGC 1 cut(s) 192
BspMAI CTGCAG 1 cut(s) 402
BspQI GCTCTTC 1 cut(s) 387
BspTNI GGTCTC 1 cut(s) 154
BsrBI CCGCTC 1 cut(s) 194
BssMI GATC 1 cut(s) 210
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 1 cut(s) 387
BstC8I GCNNGC 1 cut(s) 355
BstF5I GGATG 1 cut(s) 153
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 1 cut(s) 213
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 210
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 398
BstV1I GCAGC 1 cut(s) 384
BtsCI GGATG 1 cut(s) 153
BtsIMutI CAGTG 1 cut(s) 243
Cac8I GCNNGC 1 cut(s) 355
CfoI GCGC 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 63
CpoI CGGWCCG 1 cut(s) 63
Csp6I GTAC 4 cut(s) 38, 115, 232, 330
CspI CGGWCCG 1 cut(s) 63
CviAII CATG 1 cut(s) 289
CviJI RGCY 8 cut(s) 16, 49, 94, 174, 242, 357, 371, 397
CviKI_1 RGCY 8 cut(s) 16, 49, 94, 174, 242, 357, 371, 397
CviQI GTAC 4 cut(s) 38, 115, 232, 330
DpnI GATC 1 cut(s) 212
DpnII GATC 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco31I GGTCTC 1 cut(s) 154
Eco47I GGWCC 1 cut(s) 63
FaeI CATG 1 cut(s) 292
FaiI YATR 5 cut(s) 189, 225, 275, 290, 298
FatI CATG 1 cut(s) 288
Fnu4HI GCNGC 1 cut(s) 398
FokI GGATG 1 cut(s) 160
Fsp4HI GCNGC 1 cut(s) 398
FspBI CTAG 1 cut(s) 17
GlaI GCGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 398
GsuI CTGGAG 1 cut(s) 32
HaeII RGCGCY 1 cut(s) 61
HapII CCGG 1 cut(s) 61
HhaI GCGC 1 cut(s) 60
Hin1II CATG 1 cut(s) 292
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HincII GTYRAC 1 cut(s) 78
HindII GTYRAC 1 cut(s) 78
HinfI GANTC 1 cut(s) 7
HpaII CCGG 1 cut(s) 61
HphI GGTGA 2 cut(s) 253, 312
Hpy166II GTNNAC 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 215
Hpy188III TCNNGA 1 cut(s) 11
Hpy8I GTNNAC 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 103
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 3 cut(s) 138, 300, 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
Hsp92II CATG 1 cut(s) 292
HspAI GCGC 1 cut(s) 58
Kzo9I GATC 1 cut(s) 210
LguI GCTCTTC 1 cut(s) 387
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 3 cut(s) 54, 74, 367
Lsp1109I GCAGC 1 cut(s) 384
MaeI CTAG 1 cut(s) 17
MaeIII GTNAC 2 cut(s) 197, 278
MalI GATC 1 cut(s) 212
MbiI CCGCTC 1 cut(s) 194
MboI GATC 1 cut(s) 210
MboII GAAGA 2 cut(s) 163, 404
MluCI AATT 2 cut(s) 83, 348
MnlI CCTC 4 cut(s) 138, 189, 213, 269
MseI TTAA 2 cut(s) 359, 375
MspI CCGG 1 cut(s) 61
MwoI GCNNNNNNNGC 1 cut(s) 55
NdeII GATC 1 cut(s) 210
NlaIII CATG 1 cut(s) 292
NmuCI GTSAC 1 cut(s) 278
PciSI GCTCTTC 1 cut(s) 387
PfeI GAWTC 1 cut(s) 7
PkrI GCNGC 1 cut(s) 399
PspPI GGNCC 1 cut(s) 63
PstI CTGCAG 1 cut(s) 402
RsaI GTAC 4 cut(s) 39, 116, 233, 331
RsaNI GTAC 4 cut(s) 38, 115, 232, 330
Rsr2I CGGWCCG 1 cut(s) 63
RsrII CGGWCCG 1 cut(s) 63
SapI GCTCTTC 1 cut(s) 387
SaqAI TTAA 2 cut(s) 359, 375
SatI GCNGC 1 cut(s) 398
Sau3AI GATC 1 cut(s) 210
Sau96I GGNCC 1 cut(s) 63
ScaI AGTACT 1 cut(s) 233
SetI ASST 6 cut(s) 18, 96, 261, 325, 359, 399
SfcI CTRYAG 1 cut(s) 398
SinI GGWCC 1 cut(s) 63
Sse9I AATT 2 cut(s) 83, 348
SsiI CCGC 1 cut(s) 192
SspMI CTAG 1 cut(s) 17
TaaI ACNGT 1 cut(s) 265
TaqI TCGA 1 cut(s) 228
TaqII GACCGA 2 cut(s) 80, 95
TasI AATT 2 cut(s) 83, 348
TatI WGTACW 2 cut(s) 114, 231
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 359, 375
Tru9I TTAA 2 cut(s) 359, 375
TscAI CASTG 1 cut(s) 250
TseFI GTSAC 1 cut(s) 278
TseI GCWGC 1 cut(s) 397
Tsp45I GTSAC 1 cut(s) 278
TspDTI ATGAA 2 cut(s) 164, 305
TspRI CASTG 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 63
XapI RAATTY 1 cut(s) 83
XspI CTAG 1 cut(s) 17
ZrmI AGTACT 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.