Rmu_sc0000614.1_g000006

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000614.1
OG0018519
Physical Location & Seq
Reverse (-)
33121 .. 34466
1346 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000614.1_g000006.1.cds

Sequence Viewer

Length: 495 bp
atggttggaaatggaatttatggaactggggtcccctgctattgggataaggcttttgggctggccgccttttgccaagtttggaagacagcctgcgatttgaaattgacatacaatgctgctggtattctggatgaagacatggagaccaaagacaagccccctcctgtctataccgctcgtaaccctccagagatcagatacccacatatcgagtactcaaaagccactgacacaactaacttcactgttcgccaaaagatatggaaggcaaagagcatcgcagtggatatgccagacaagattccagttgatgtttggaaaagagtagtgcctcaagcctcgtctggatttgctggaaatgcaatagtgcctgcatttgcacaggcaacagtgaaggagttgaaggagaaagaggactcttggcttgtgaggaaggtcagagaagggtttgagagattggatgatgaatacgtgaggtcggggatagactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
Transferase

Protein Analysis

164

Amino Acids

18.46

Weight (kDa)

6.6

Isoelectric Point (pI)

29.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018519)

Species Orthologous Gene IDs
prunus_persica Prupe.8G200500_v2.0.a1
rosa_laevigata RLG00000012744
rosa_multiflora Rmu_sc0000614.1_g000006
rosa_roxburghii Rroxscaffold_7G00184700
rosa_samantha Rh6AG276100 Rh6AG276300 Rh6BG276400 Rh6BG276500 Rh6CG278500 Rh6DG270900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 179
AciI CCGC 2 cut(s) 66, 177
AcoI YGGCCR 1 cut(s) 63
AcsI RAATTY 1 cut(s) 15
AfaI GTAC 1 cut(s) 218
AfiI CCNNNNNNNGG 1 cut(s) 42
AgsI TTSAA 2 cut(s) 103, 406
Alw26I GTCTC 1 cut(s) 140
AoxI GGCC 1 cut(s) 63
ApeKI GCWGC 1 cut(s) 119
ApoI RAATTY 1 cut(s) 15
AspS9I GGNCC 1 cut(s) 31
AvaII GGWCC 1 cut(s) 31
BbsI GAAGAC 2 cut(s) 92, 144
BbvI GCAGC 1 cut(s) 106
BcoDI GTCTC 1 cut(s) 140
BisI GCNGC 2 cut(s) 66, 120
BlsI GCNGC 2 cut(s) 67, 121
BmcAI AGTACT 1 cut(s) 218
Bme18I GGWCC 1 cut(s) 31
BmgT120I GGNCC 1 cut(s) 31
BmiI GGNNCC 2 cut(s) 32, 33
BmrI ACTGGG 1 cut(s) 36
BmsI GCATC 1 cut(s) 288
BmuI ACTGGG 1 cut(s) 36
BpiI GAAGAC 2 cut(s) 92, 144
BpmI CTGGAG 1 cut(s) 174
BpuEI CTTGAG 1 cut(s) 321
BsaAI YACGTR 1 cut(s) 475
BsaI GGTCTC 1 cut(s) 140
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse1I ACTGG 2 cut(s) 31, 308
BseGI GGATG 2 cut(s) 139, 469
BseLI CCNNNNNNNGG 1 cut(s) 42
BseNI ACTGG 2 cut(s) 31, 308
BseXI GCAGC 1 cut(s) 106
BshFI GGCC 1 cut(s) 65
BslFI GGGAC 1 cut(s) 17
BslI CCNNNNNNNGG 1 cut(s) 42
BsmAI GTCTC 1 cut(s) 140
BsmFI GGGAC 1 cut(s) 17
BsnI GGCC 1 cut(s) 65
Bso31I GGTCTC 1 cut(s) 140
Bsp143I GATC 1 cut(s) 195
BspACI CCGC 2 cut(s) 66, 177
BspANI GGCC 1 cut(s) 65
BspLI GGNNCC 2 cut(s) 32, 33
BspTNI GGTCTC 1 cut(s) 140
BsrBI CCGCTC 1 cut(s) 179
BsrI ACTGG 2 cut(s) 31, 308
BssMI GATC 1 cut(s) 195
Bst4CI ACNGT 2 cut(s) 250, 394
BstBAI YACGTR 1 cut(s) 475
BstC8I GCNNGC 3 cut(s) 63, 94, 375
BstF5I GGATG 2 cut(s) 139, 469
BstKTI GATC 1 cut(s) 198
BstMAI GTCTC 1 cut(s) 140
BstMBI GATC 1 cut(s) 195
BstMWI GCNNNNNNNGC 1 cut(s) 362
BstV1I GCAGC 1 cut(s) 106
BstV2I GAAGAC 2 cut(s) 92, 144
BsuRI GGCC 1 cut(s) 65
BtgZI GCGATG 1 cut(s) 265
BtsCI GGATG 2 cut(s) 139, 469
BtsI GCAGTG 1 cut(s) 291
BtsIMutI CAGTG 4 cut(s) 228, 246, 291, 399
Cac8I GCNNGC 3 cut(s) 63, 94, 375
Cfr13I GGNCC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 217
CviAII CATG 1 cut(s) 142
CviJI RGCY 8 cut(s) 53, 61, 65, 92, 160, 227, 341, 427
CviKI_1 RGCY 8 cut(s) 53, 61, 65, 92, 160, 227, 341, 427
CviQI GTAC 1 cut(s) 217
DpnI GATC 1 cut(s) 197
DpnII GATC 1 cut(s) 195
EaeI YGGCCR 1 cut(s) 63
Eco31I GGTCTC 1 cut(s) 140
Eco47I GGWCC 1 cut(s) 31
EcoO109I RGGNCCY 1 cut(s) 31
FaeI CATG 1 cut(s) 145
FaiI YATR 7 cut(s) 21, 112, 143, 174, 210, 265, 293
FaqI GGGAC 1 cut(s) 17
FatI CATG 1 cut(s) 141
Fnu4HI GCNGC 2 cut(s) 66, 120
FokI GGATG 2 cut(s) 146, 476
Fsp4HI GCNGC 2 cut(s) 66, 120
GluI GCNGC 2 cut(s) 66, 120
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 1 cut(s) 65
Hin1II CATG 1 cut(s) 145
HinfI GANTC 2 cut(s) 304, 419
Hpy188I TCNGA 2 cut(s) 200, 443
Hpy188III TCNNGA 3 cut(s) 131, 191, 348
HpyAV CCTTC 5 cut(s) 262, 391, 400, 430, 440
HpyCH4III ACNGT 2 cut(s) 250, 394
HpyCH4IV ACGT 1 cut(s) 474
HpyCH4V TGCA 3 cut(s) 365, 377, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 362
HpySE526I ACGT 1 cut(s) 474
Hsp92II CATG 1 cut(s) 145
KflI GGGWCCC 1 cut(s) 31
Kzo9I GATC 1 cut(s) 195
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 1 cut(s) 288
MaeII ACGT 1 cut(s) 474
MaeIII GTNAC 1 cut(s) 182
MalI GATC 1 cut(s) 197
MbiI CCGCTC 1 cut(s) 179
MboI GATC 1 cut(s) 195
MboII GAAGA 2 cut(s) 97, 149
MluCI AATT 2 cut(s) 15, 104
MlyI GAGTC 1 cut(s) 413
MnlI CCTC 7 cut(s) 174, 198, 345, 352, 409, 426, 471
MslI CAYNNNNRTG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 362
NdeII GATC 1 cut(s) 195
NlaIII CATG 1 cut(s) 145
NlaIV GGNNCC 2 cut(s) 32, 33
PfeI GAWTC 1 cut(s) 304
PkrI GCNGC 2 cut(s) 67, 121
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
Ppu21I YACGTR 1 cut(s) 475
PpuMI RGGWCCY 1 cut(s) 31
Psp5II RGGWCCY 1 cut(s) 31
PspN4I GGNNCC 2 cut(s) 32, 33
PspPI GGNCC 1 cut(s) 31
PspPPI RGGWCCY 1 cut(s) 31
RsaI GTAC 1 cut(s) 218
RsaNI GTAC 1 cut(s) 217
RseI CAYNNNNRTG 1 cut(s) 284
SatI GCNGC 2 cut(s) 66, 120
Sau3AI GATC 1 cut(s) 195
Sau96I GGNCC 1 cut(s) 31
ScaI AGTACT 1 cut(s) 218
SchI GAGTC 1 cut(s) 413
SetI ASST 3 cut(s) 441, 477, 482
SfaNI GCATC 1 cut(s) 288
SinI GGWCC 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 284
SmlI CTYRAG 1 cut(s) 336
SmoI CTYRAG 1 cut(s) 336
Sse9I AATT 2 cut(s) 15, 104
SsiI CCGC 2 cut(s) 66, 177
TaaI ACNGT 2 cut(s) 250, 394
TaiI ACGT 1 cut(s) 477
TaqI TCGA 1 cut(s) 213
TasI AATT 2 cut(s) 15, 104
TatI WGTACW 1 cut(s) 216
TauI GCSGC 1 cut(s) 68
TfiI GAWTC 1 cut(s) 304
TscAI CASTG 4 cut(s) 235, 253, 291, 399
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 2 cut(s) 150, 483
TspRI CASTG 4 cut(s) 235, 253, 291, 399
VpaK11BI GGWCC 1 cut(s) 31
XapI RAATTY 1 cut(s) 15
XcmI CCANNNNNNNNNTGG 1 cut(s) 315
ZrmI AGTACT 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.