Rh6AG276100

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0018519
Physical Location & Seq
Reverse (-)
47042769 .. 47043029
261 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG276100.1

Sequence Viewer

Length: 261 bp
ATGTTGTTGCAGAAAAGATATGGAAGGCAAAGAGCATCGCAGTGGATATGGGCCGATATGCCAGACGAGATTCCAGTTGATGCTTGGAAAAGAGTATTGCCTCAAGCCTCGTCTGGATTTGCTGGAAATGCAATAGTGCCTGCATTTGCACAGGCAACAGTGAAGGAGCTGAAGGAGAAAGGGGACTCTTGGCTTGTGAGGAAGGTCAGGGAAGGGTTTGAGAGATTGGATGATGAATATGTGAGGTCGGGGATAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
Transferase

Protein Analysis

86

Amino Acids

9.88

Weight (kDa)

8.04

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 25 - 86 1.8e-06 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0018519)

Species Orthologous Gene IDs
prunus_persica Prupe.8G200500_v2.0.a1
rosa_laevigata RLG00000012744
rosa_multiflora Rmu_sc0000614.1_g000006
rosa_roxburghii Rroxscaffold_7G00184700
rosa_samantha Rh6AG276100 Rh6AG276300 Rh6BG276400 Rh6BG276500 Rh6CG278500 Rh6DG270900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 191
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
AoxI GGCC 1 cut(s) 51
AspS9I GGNCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmsI GCATC 2 cut(s) 44, 70
BpuEI CTTGAG 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 74
BseGI GGATG 1 cut(s) 235
BseNI ACTGG 1 cut(s) 74
BshFI GGCC 1 cut(s) 53
BslFI GGGAC 1 cut(s) 197
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 1 cut(s) 53
BspANI GGCC 1 cut(s) 53
BsrI ACTGG 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 160
BstC8I GCNNGC 1 cut(s) 141
BstF5I GGATG 1 cut(s) 235
BstMWI GCNNNNNNNGC 1 cut(s) 128
BsuRI GGCC 1 cut(s) 53
BtgZI GCGATG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 235
BtsI GCAGTG 1 cut(s) 47
BtsIMutI CAGTG 2 cut(s) 47, 165
Cac8I GCNNGC 1 cut(s) 141
Cfr13I GGNCC 1 cut(s) 51
CviJI RGCY 4 cut(s) 53, 107, 169, 193
CviKI_1 RGCY 4 cut(s) 53, 107, 169, 193
Eco57I CTGAAG 1 cut(s) 191
FaiI YATR 4 cut(s) 21, 49, 59, 240
FaqI GGGAC 1 cut(s) 197
FokI GGATG 1 cut(s) 242
HaeIII GGCC 1 cut(s) 53
HinfI GANTC 2 cut(s) 70, 185
Hpy188III TCNNGA 1 cut(s) 114
HpyAV CCTTC 5 cut(s) 18, 157, 166, 196, 206
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 4 cut(s) 10, 131, 143, 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 128
LmnI GCTCC 1 cut(s) 166
LpnPI CCDG 7 cut(s) 75, 87, 99, 108, 137, 153, 193
LweI GCATC 2 cut(s) 44, 70
MlyI GAGTC 1 cut(s) 179
MnlI CCTC 4 cut(s) 111, 118, 192, 237
MslI CAYNNNNRTG 1 cut(s) 40
MwoI GCNNNNNNNGC 1 cut(s) 128
PfeI GAWTC 1 cut(s) 70
PleI GAGTC 1 cut(s) 179
PpsI GAGTC 1 cut(s) 179
PspPI GGNCC 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 51
SchI GAGTC 1 cut(s) 179
SetI ASST 3 cut(s) 171, 207, 248
SfaNI GCATC 2 cut(s) 44, 70
SmiMI CAYNNNNRTG 1 cut(s) 40
SmlI CTYRAG 1 cut(s) 102
SmoI CTYRAG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 160
TfiI GAWTC 1 cut(s) 70
TscAI CASTG 2 cut(s) 47, 165
TspDTI ATGAA 1 cut(s) 249
TspRI CASTG 2 cut(s) 47, 165
XcmI CCANNNNNNNNNTGG 1 cut(s) 81
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.