Rh6BG276500

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0018519
Physical Location & Seq
Reverse (-)
49744783 .. 49745355
573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG276500.1

Sequence Viewer

Length: 252 bp
ATGGAGAATCTGGAGCTAGTTGAGAAAGATGTGATTGTACCAGACAAGCCAACACAGCGCCAGAGAAGTTTCTTATCAAATATTGACTTGCCCCTTATTGTGTACCAACAATATATCTGTGTCGTTTTTGGATCCTCCAAGCAATGGGATGAGCTTCTCCGAGGCTTACCAAAGCTTATAACGTGCACTAGGTCCCCTGCTATTGGGATAAGGCTTTTGGGCTGGCCGCCTTTTGCCAAGTTTGGAAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
Transferase

Protein Analysis

83

Amino Acids

9.54

Weight (kDa)

9.14

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018519)

Species Orthologous Gene IDs
prunus_persica Prupe.8G200500_v2.0.a1
rosa_laevigata RLG00000012744
rosa_multiflora Rmu_sc0000614.1_g000006
rosa_roxburghii Rroxscaffold_7G00184700
rosa_samantha Rh6AG276100 Rh6AG276300 Rh6BG276400 Rh6BG276500 Rh6CG278500 Rh6DG270900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 179
AccB7I CCANNNNNTGG 1 cut(s) 144
AciI CCGC 1 cut(s) 227
AclWI GGATC 2 cut(s) 126, 139
AcoI YGGCCR 1 cut(s) 224
AfaI GTAC 2 cut(s) 39, 104
AfiI CCNNNNNNNGG 2 cut(s) 144, 203
AluBI AGCT 3 cut(s) 16, 154, 175
AluI AGCT 3 cut(s) 16, 154, 175
Alw21I GWGCWC 1 cut(s) 188
Alw44I GTGCAC 1 cut(s) 184
AlwI GGATC 2 cut(s) 126, 139
AoxI GGCC 1 cut(s) 224
ApaLI GTGCAC 1 cut(s) 184
AspLEI GCGC 1 cut(s) 60
AspS9I GGNCC 1 cut(s) 192
AvaII GGWCC 1 cut(s) 192
BaeGI GKGCMC 1 cut(s) 188
BamHI GGATCC 1 cut(s) 131
Bbv12I GWGCWC 1 cut(s) 188
BfaI CTAG 2 cut(s) 17, 189
BfoI RGCGCY 1 cut(s) 61
BisI GCNGC 1 cut(s) 227
BlsI GCNGC 1 cut(s) 228
Bme18I GGWCC 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 192
BmiI GGNNCC 2 cut(s) 133, 194
BpmI CTGGAG 1 cut(s) 32
BsaJI CCNNGG 1 cut(s) 160
Bsc4I CCNNNNNNNGG 2 cut(s) 144, 203
Bse3DI GCAATG 1 cut(s) 149
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 2 cut(s) 144, 203
BseMI GCAATG 1 cut(s) 149
BseSI GKGCMC 1 cut(s) 188
BshFI GGCC 1 cut(s) 226
BsiHKAI GWGCWC 1 cut(s) 188
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 2 cut(s) 144, 203
BsmFI GGGAC 1 cut(s) 178
BsnI GGCC 1 cut(s) 226
Bsp1286I GDGCHC 1 cut(s) 188
Bsp143I GATC 1 cut(s) 131
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 226
BspLI GGNNCC 2 cut(s) 133, 194
BspPI GGATC 2 cut(s) 126, 139
BsrDI GCAATG 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 160
BssMI GATC 1 cut(s) 131
BstC8I GCNNGC 1 cut(s) 224
BstF5I GGATG 1 cut(s) 154
BstH2I RGCGCY 1 cut(s) 61
BstHHI GCGC 1 cut(s) 60
BstKTI GATC 1 cut(s) 134
BstMBI GATC 1 cut(s) 131
BstMWI GCNNNNNNNGC 1 cut(s) 55
BstSLI GKGCMC 1 cut(s) 188
BstX2I RGATCY 1 cut(s) 131
BstYI RGATCY 1 cut(s) 131
BsuRI GGCC 1 cut(s) 226
BtsCI GGATG 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 224
CfoI GCGC 1 cut(s) 60
Cfr13I GGNCC 1 cut(s) 192
Csp6I GTAC 2 cut(s) 38, 103
CviJI RGCY 8 cut(s) 16, 49, 154, 165, 175, 214, 222, 226
CviKI_1 RGCY 8 cut(s) 16, 49, 154, 165, 175, 214, 222, 226
CviQI GTAC 2 cut(s) 38, 103
DpnI GATC 1 cut(s) 133
DpnII GATC 1 cut(s) 131
EaeI YGGCCR 1 cut(s) 224
Eco47I GGWCC 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 192
FaiI YATR 2 cut(s) 114, 179
FaqI GGGAC 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 227
FokI GGATG 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 227
FspBI CTAG 2 cut(s) 17, 189
GlaI GCGC 1 cut(s) 59
GluI GCNGC 1 cut(s) 227
GsuI CTGGAG 1 cut(s) 32
HaeII RGCGCY 1 cut(s) 61
HaeIII GGCC 1 cut(s) 226
HhaI GCGC 1 cut(s) 60
Hin6I GCGC 1 cut(s) 58
HinP1I GCGC 1 cut(s) 58
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 1 cut(s) 7
Hpy166II GTNNAC 2 cut(s) 103, 186
Hpy188I TCNGA 1 cut(s) 161
Hpy188III TCNNGA 1 cut(s) 11
Hpy8I GTNNAC 2 cut(s) 103, 186
HpyCH4IV ACGT 1 cut(s) 182
HpyCH4V TGCA 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 1 cut(s) 55
HpySE526I ACGT 1 cut(s) 182
HspAI GCGC 1 cut(s) 58
Kzo9I GATC 1 cut(s) 131
LmnI GCTCC 1 cut(s) 13
LpnPI CCDG 4 cut(s) 54, 74, 208, 210
MaeI CTAG 2 cut(s) 17, 189
MaeII ACGT 1 cut(s) 182
MalI GATC 1 cut(s) 133
MboI GATC 1 cut(s) 131
MflI RGATCY 1 cut(s) 131
MhlI GDGCHC 1 cut(s) 188
MnlI CCTC 2 cut(s) 145, 155
MwoI GCNNNNNNNGC 1 cut(s) 55
NdeII GATC 1 cut(s) 131
NlaIV GGNNCC 2 cut(s) 133, 194
PfeI GAWTC 1 cut(s) 7
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 1 cut(s) 228
PpuMI RGGWCCY 1 cut(s) 192
PsiI TTATAA 1 cut(s) 179
Psp5II RGGWCCY 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 133, 194
PspPI GGNCC 1 cut(s) 192
PspPPI RGGWCCY 1 cut(s) 192
PsuI RGATCY 1 cut(s) 131
RsaI GTAC 2 cut(s) 39, 104
RsaNI GTAC 2 cut(s) 38, 103
SatI GCNGC 1 cut(s) 227
Sau3AI GATC 1 cut(s) 131
Sau96I GGNCC 1 cut(s) 192
SduI GDGCHC 1 cut(s) 188
SetI ASST 5 cut(s) 18, 156, 177, 185, 194
SinI GGWCC 1 cut(s) 192
SsiI CCGC 1 cut(s) 227
SspI AATATT 1 cut(s) 82
SspMI CTAG 2 cut(s) 17, 189
TaiI ACGT 1 cut(s) 185
TauI GCSGC 1 cut(s) 229
TfiI GAWTC 1 cut(s) 7
Van91I CCANNNNNTGG 1 cut(s) 144
VneI GTGCAC 1 cut(s) 184
VpaK11BI GGWCC 1 cut(s) 192
XspI CTAG 2 cut(s) 17, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.