RLG00000012744

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0018519
Physical Location & Seq
Forward (+)
21943141 .. 21943610
470 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012744

Sequence Viewer

Length: 378 bp
ATGGAAGGCAAAGAGCATCGCTGTGAAGACGAGATTCCAGTTGATGTTTGGAAAAGAGTAGTACGTGCCTCAAGCCTCGTCAGATTTGCTGGAAATGCAATAGTGCCTGCATTTGCACAGGCAACAGTGAAGGAGCTGAAGGAGAAAGAGGACTCTTGGCTTGTGAGGAAGGTCAGAGAAGGGTTTGAGAGATTGGATGATGAATATGTGAGGAAGATGAATTCTCATGGGGAAGAGTTAAGCGCTCAACATCGGTTCAACTCGGACCAGGGTTTTGTTATGGTGCCAGGACCACCAGGCAAACCAGGCTTTAGTATCTGCTTGCAACTGCCTGATGATCAAGTGGAGCTGCTCTGCAAGTTGGTGATGGATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
Transferase

Protein Analysis

126

Amino Acids

14.27

Weight (kDa)

5.28

Isoelectric Point (pI)

29.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018519)

Species Orthologous Gene IDs
prunus_persica Prupe.8G200500_v2.0.a1
rosa_laevigata RLG00000012744
rosa_multiflora Rmu_sc0000614.1_g000006
rosa_roxburghii Rroxscaffold_7G00184700
rosa_samantha Rh6AG276100 Rh6AG276300 Rh6BG276400 Rh6BG276500 Rh6CG278500 Rh6DG270900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 283
AcsI RAATTY 1 cut(s) 220
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 1 cut(s) 63
AfeI AGCGCT 1 cut(s) 244
AgsI TTSAA 1 cut(s) 259
AjnI CCWGG 4 cut(s) 267, 286, 295, 304
AluBI AGCT 2 cut(s) 136, 349
AluI AGCT 2 cut(s) 136, 349
Aor51HI AGCGCT 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 349
ApoI RAATTY 1 cut(s) 220
ArsI GACNNNNNNTTYG 2 cut(s) 257, 289
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 2 cut(s) 265, 290
AsuHPI GGTGA 1 cut(s) 376
AvaII GGWCC 2 cut(s) 265, 290
BanI GGYRCC 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 33
BbvI GCAGC 1 cut(s) 336
BccI CCATC 1 cut(s) 361
BciT130I CCWGG 4 cut(s) 269, 288, 297, 306
BclI TGATCA 1 cut(s) 337
BfoI RGCGCY 1 cut(s) 246
BisI GCNGC 1 cut(s) 350
BlsI GCNGC 1 cut(s) 351
Bme1390I CCNGG 4 cut(s) 269, 288, 297, 306
Bme18I GGWCC 2 cut(s) 265, 290
BmgT120I GGNCC 2 cut(s) 265, 290
BmiI GGNNCC 1 cut(s) 285
BmrFI CCNGG 4 cut(s) 269, 288, 297, 306
BmsI GCATC 1 cut(s) 25
BpiI GAAGAC 1 cut(s) 33
BpuEI CTTGAG 1 cut(s) 55
BsaAI YACGTR 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 38
BseBI CCWGG 4 cut(s) 269, 288, 297, 306
BseDI CCNNGG 1 cut(s) 268
BseGI GGATG 2 cut(s) 202, 376
BseNI ACTGG 1 cut(s) 38
BseXI GCAGC 1 cut(s) 336
BshNI GGYRCC 1 cut(s) 283
Bsp143I GATC 1 cut(s) 337
BspLI GGNNCC 1 cut(s) 285
BspT107I GGYRCC 1 cut(s) 283
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 268
BssMI GATC 1 cut(s) 337
Bst2UI CCWGG 4 cut(s) 269, 288, 297, 306
Bst4CI ACNGT 1 cut(s) 127
Bst6I CTCTTC 1 cut(s) 228
BstBAI YACGTR 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 108, 323
BstF5I GGATG 2 cut(s) 202, 376
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 1 cut(s) 340
BstMBI GATC 1 cut(s) 337
BstMWI GCNNNNNNNGC 2 cut(s) 95, 306
BstNI CCWGG 4 cut(s) 269, 288, 297, 306
BstSCI CCNGG 4 cut(s) 267, 286, 295, 304
BstV1I GCAGC 1 cut(s) 336
BstV2I GAAGAC 1 cut(s) 33
BtgZI GCGATG 1 cut(s) 2
BtsCI GGATG 2 cut(s) 202, 376
BtsIMutI CAGTG 1 cut(s) 132
Cac8I GCNNGC 2 cut(s) 108, 323
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 2 cut(s) 265, 290
Csp6I GTAC 1 cut(s) 62
CviAII CATG 1 cut(s) 227
CviJI RGCY 5 cut(s) 75, 136, 160, 309, 349
CviKI_1 RGCY 5 cut(s) 75, 136, 160, 309, 349
CviQI GTAC 1 cut(s) 62
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco47I GGWCC 2 cut(s) 265, 290
Eco47III AGCGCT 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 158
EcoRI GAATTC 1 cut(s) 220
EcoRII CCWGG 4 cut(s) 267, 286, 295, 304
FaeI CATG 1 cut(s) 230
FaiI YATR 3 cut(s) 207, 228, 281
FatI CATG 1 cut(s) 226
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 1 cut(s) 350
FokI GGATG 1 cut(s) 209
Fsp4HI GCNGC 1 cut(s) 350
GlaI GCGC 1 cut(s) 244
GluI GCNGC 1 cut(s) 350
HaeII RGCGCY 1 cut(s) 246
HhaI GCGC 1 cut(s) 245
Hin1II CATG 1 cut(s) 230
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 2 cut(s) 34, 152
HphI GGTGA 1 cut(s) 376
Hpy188I TCNGA 3 cut(s) 83, 176, 265
HpyAV CCTTC 4 cut(s) 124, 133, 163, 173
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 5 cut(s) 98, 110, 116, 325, 357
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 306
HpySE526I ACGT 1 cut(s) 64
Hsp92II CATG 1 cut(s) 230
HspAI GCGC 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 1 cut(s) 337
LmnI GCTCC 2 cut(s) 133, 346
Lsp1109I GCAGC 1 cut(s) 336
LweI GCATC 1 cut(s) 25
MaeII ACGT 1 cut(s) 64
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 3 cut(s) 38, 226, 245
MluCI AATT 1 cut(s) 220
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 5 cut(s) 79, 86, 142, 159, 204
MseI TTAA 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 21
MspR9I CCNGG 4 cut(s) 269, 288, 297, 306
MvaI CCWGG 4 cut(s) 269, 288, 297, 306
MwoI GCNNNNNNNGC 2 cut(s) 95, 306
NdeII GATC 1 cut(s) 337
NlaIII CATG 1 cut(s) 230
NlaIV GGNNCC 1 cut(s) 285
PfeI GAWTC 1 cut(s) 34
PkrI GCNGC 1 cut(s) 351
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
Ppu21I YACGTR 1 cut(s) 65
Psp6I CCWGG 4 cut(s) 267, 286, 295, 304
PspGI CCWGG 4 cut(s) 267, 286, 295, 304
PspN4I GGNNCC 1 cut(s) 285
PspPI GGNCC 2 cut(s) 265, 290
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
RseI CAYNNNNRTG 1 cut(s) 21
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 1 cut(s) 350
Sau3AI GATC 1 cut(s) 337
Sau96I GGNCC 2 cut(s) 265, 290
SchI GAGTC 1 cut(s) 146
ScrFI CCNGG 4 cut(s) 269, 288, 297, 306
SetI ASST 4 cut(s) 67, 138, 174, 351
SfaNI GCATC 1 cut(s) 25
SinI GGWCC 2 cut(s) 265, 290
SmiMI CAYNNNNRTG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
Sse9I AATT 1 cut(s) 220
StyD4I CCNGG 4 cut(s) 267, 286, 295, 304
TaaI ACNGT 1 cut(s) 127
TaiI ACGT 1 cut(s) 67
TasI AATT 1 cut(s) 220
TfiI GAWTC 1 cut(s) 34
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TscAI CASTG 1 cut(s) 132
TseI GCWGC 1 cut(s) 349
TspDTI ATGAA 2 cut(s) 216, 233
TspRI CASTG 1 cut(s) 132
VpaK11BI GGWCC 2 cut(s) 265, 290
XapI RAATTY 1 cut(s) 220
XcmI CCANNNNNNNNNTGG 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.