Rh6BG276400

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0018519
Physical Location & Seq
Reverse (-)
49744178 .. 49744459
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG276400.1

Sequence Viewer

Length: 282 bp
ATGGGGCAGTTGAAGAGCTGCAGTAGCCCCCATGTTGTTGCAGAAAAGATATGGAAGGCAAAGAGCATCGCAGTGGATATGCCAGACGAGATTCCAGTTGATGTTTGGAAAAGAGTAGTGCCTCAAGCCTCGTCTGGATTTGCTGGAAATGCAATAGTGCCTGCATTTGCACAGGCAACAGTGAAGGAGCTGAAGGAGAAAGAGGACTCTTGGCTTGTGAGGAAGGTCAGAGAAGGGTTTGAGAGATTGGATGATGAATATGTGAGGTCAGGGATAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00073 map00073
Pfam Domains
Protein Families
Transferase

Protein Analysis

93

Amino Acids

10.37

Weight (kDa)

5.83

Isoelectric Point (pI)

42.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 31 - 93 5e-08 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018519)

Species Orthologous Gene IDs
prunus_persica Prupe.8G200500_v2.0.a1
rosa_laevigata RLG00000012744
rosa_multiflora Rmu_sc0000614.1_g000006
rosa_roxburghii Rroxscaffold_7G00184700
rosa_samantha Rh6AG276100 Rh6AG276300 Rh6BG276400 Rh6BG276500 Rh6CG278500 Rh6DG270900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 212
AgsI TTSAA 1 cut(s) 13
AluBI AGCT 2 cut(s) 18, 190
AluI AGCT 2 cut(s) 18, 190
ApeKI GCWGC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 5
BfmI CTRYAG 1 cut(s) 19
BisI GCNGC 1 cut(s) 19
BlsI GCNGC 1 cut(s) 20
BmsI GCATC 1 cut(s) 75
BpuEI CTTGAG 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 95
BseGI GGATG 1 cut(s) 256
BseNI ACTGG 1 cut(s) 95
BseXI GCAGC 1 cut(s) 5
BspMAI CTGCAG 1 cut(s) 23
BspQI GCTCTTC 1 cut(s) 8
BsrI ACTGG 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 162
BstF5I GGATG 1 cut(s) 256
BstMWI GCNNNNNNNGC 2 cut(s) 24, 149
BstSFI CTRYAG 1 cut(s) 19
BstV1I GCAGC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 52
BtsCI GGATG 1 cut(s) 256
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 2 cut(s) 78, 186
Cac8I GCNNGC 1 cut(s) 162
CviAII CATG 1 cut(s) 32
CviJI RGCY 5 cut(s) 18, 27, 128, 190, 214
CviKI_1 RGCY 5 cut(s) 18, 27, 128, 190, 214
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
Eco57I CTGAAG 1 cut(s) 212
FaeI CATG 1 cut(s) 35
FaiI YATR 4 cut(s) 33, 52, 80, 261
FatI CATG 1 cut(s) 31
Fnu4HI GCNGC 1 cut(s) 19
FokI GGATG 1 cut(s) 263
Fsp4HI GCNGC 1 cut(s) 19
GluI GCNGC 1 cut(s) 19
Hin1II CATG 1 cut(s) 35
HinfI GANTC 2 cut(s) 91, 206
Hpy188I TCNGA 1 cut(s) 230
Hpy188III TCNNGA 1 cut(s) 135
HpyAV CCTTC 5 cut(s) 49, 178, 187, 217, 227
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4V TGCA 5 cut(s) 21, 41, 152, 164, 170
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 149
Hsp92II CATG 1 cut(s) 35
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 7 cut(s) 96, 108, 120, 129, 158, 174, 255
Lsp1109I GCAGC 1 cut(s) 5
LweI GCATC 1 cut(s) 75
MboII GAAGA 1 cut(s) 25
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 5 cut(s) 132, 139, 196, 213, 258
MslI CAYNNNNRTG 1 cut(s) 71
MwoI GCNNNNNNNGC 2 cut(s) 24, 149
NlaIII CATG 1 cut(s) 35
PciSI GCTCTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 91
PkrI GCNGC 1 cut(s) 20
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PstI CTGCAG 1 cut(s) 23
RseI CAYNNNNRTG 1 cut(s) 71
SapI GCTCTTC 1 cut(s) 8
SatI GCNGC 1 cut(s) 19
SchI GAGTC 1 cut(s) 200
SetI ASST 4 cut(s) 20, 192, 228, 269
SfaNI GCATC 1 cut(s) 75
SfcI CTRYAG 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 71
SmlI CTYRAG 1 cut(s) 123
SmoI CTYRAG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 181
TfiI GAWTC 1 cut(s) 91
TscAI CASTG 2 cut(s) 78, 186
TseI GCWGC 1 cut(s) 18
TspDTI ATGAA 1 cut(s) 270
TspRI CASTG 2 cut(s) 78, 186
XcmI CCANNNNNNNNNTGG 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.