B3 domain-containing transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G24650 |
| fragaria_vesca | FvH4_2g19630 FvH4_2g19630 |
| malus_domestica | MD05G1181100.v1.1 MD10G1169900.v1.1 |
| prunus_persica | Prupe.8G207700_v2.0.a1 Prupe.8G207700_v2.0.a1 Prupe.8G207700_v2.0.a1 Prupe.8G207700_v2.0.a1 Prupe.8G207700_v2.0.a1 Prupe.8G207700_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr6g0285371 |
| rosa_laevigata | RLG00000012648 |
| rosa_multiflora | Rmu_co8422167.1_g000001 Rmu_co8482611.1_g000001 Rmu_sc0006662.1_g000002 Rmu_sc0012535.1_g000011 |
| rosa_roxburghii | Rroxscaffold_7G00183310 |
| rosa_rugosa | Rorug06G0173900 |
| rosa_samantha | Rh6AG284600 Rh6BG285800 Rh6CG286900 Rh6DG279900 |
| rosa_wichuraiana | Rw6G024500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 2195 |
| Acc16I | TGCGCA | 1 cut(s) | 489 |
| AccB1I | GGYRCC | 4 cut(s) | 116, 423, 1162, 1899 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1487 |
| AccI | GTMKAC | 1 cut(s) | 923 |
| AccII | CGCG | 3 cut(s) | 371, 401, 938 |
| AclWI | GGATC | 4 cut(s) | 543, 606, 1635, 1833 |
| AcoI | YGGCCR | 6 cut(s) | 324, 840, 939, 1340, 1767, 1829 |
| AcsI | RAATTY | 1 cut(s) | 1924 |
| AcuI | CTGAAG | 2 cut(s) | 912, 1503 |
| AcvI | CACGTG | 1 cut(s) | 2080 |
| AcyI | GRCGYC | 2 cut(s) | 1056, 1900 |
| AdeI | CACNNNGTG | 1 cut(s) | 467 |
| AfaI | GTAC | 6 cut(s) | 458, 593, 1250, 1840, 2108, 2250 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 313, 661, 1245, 1377, 1487, 1765, 2185 |
| AflIII | ACRYGT | 1 cut(s) | 2079 |
| AgeI | ACCGGT | 1 cut(s) | 313 |
| AgsI | TTSAA | 8 cut(s) | 20, 303, 674, 1085, 1121, 1486, 1930, 1954 |
| AjiI | CACGTC | 1 cut(s) | 2212 |
| AjnI | CCWGG | 6 cut(s) | 377, 941, 1279, 1337, 1431, 1902 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1065, 1097 |
| AluBI | AGCT | 3 cut(s) | 1229, 1523, 2327 |
| AluI | AGCT | 3 cut(s) | 1229, 1523, 2327 |
| Alw26I | GTCTC | 6 cut(s) | 358, 575, 872, 889, 1353, 1555 |
| AlwI | GGATC | 4 cut(s) | 543, 606, 1635, 1833 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2109 |
| ApoI | RAATTY | 1 cut(s) | 1924 |
| AsiGI | ACCGGT | 1 cut(s) | 313 |
| AspLEI | GCGC | 7 cut(s) | 490, 706, 938, 1032, 1258, 1902, 2094 |
| AspS9I | GGNCC | 8 cut(s) | 160, 381, 1277, 1283, 1369, 1734, 1750, 2112 |
| AsuC2I | CCSGG | 7 cut(s) | 1195, 1388, 1444, 1716, 1766, 2260, 2289 |
| AsuHPI | GGTGA | 7 cut(s) | 56, 479, 1135, 1290, 1394, 1502, 2337 |
| AvaII | GGWCC | 2 cut(s) | 160, 1283 |
| BalI | TGGCCA | 1 cut(s) | 842 |
| BanI | GGYRCC | 4 cut(s) | 116, 423, 1162, 1899 |
| BbrPI | CACGTG | 1 cut(s) | 2080 |
| BbsI | GAAGAC | 4 cut(s) | 339, 900, 1509, 2067 |
| BbvCI | CCTCAGC | 4 cut(s) | 863, 2353, 2359, 2365 |
| BceAI | ACGGC | 5 cut(s) | 514, 1327, 1383, 1580, 2267 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 1049, 1083, 1808, 1842 |
| BciT130I | CCWGG | 6 cut(s) | 379, 943, 1281, 1339, 1433, 1904 |
| BclI | TGATCA | 3 cut(s) | 472, 808, 1186 |
| BcnI | CCSGG | 7 cut(s) | 1195, 1388, 1444, 1716, 1766, 2260, 2289 |
| BcoDI | GTCTC | 6 cut(s) | 358, 575, 872, 889, 1353, 1555 |
| BfaI | CTAG | 6 cut(s) | 701, 1110, 1406, 1779, 1836, 2141 |
| BfmI | CTRYAG | 2 cut(s) | 1940, 2095 |
| BfoI | RGCGCY | 3 cut(s) | 707, 1259, 1903 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 380 |
| BglII | AGATCT | 3 cut(s) | 37, 52, 519 |
| BmcAI | AGTACT | 2 cut(s) | 458, 1840 |
| Bme18I | GGWCC | 2 cut(s) | 160, 1283 |
| BmgBI | CACGTC | 1 cut(s) | 2212 |
| BmgT120I | GGNCC | 8 cut(s) | 160, 381, 1277, 1283, 1369, 1734, 1750, 2112 |
| BmiI | GGNNCC | 9 cut(s) | 118, 162, 425, 556, 828, 1164, 1752, 1901, 2306 |
| BmsI | GCATC | 5 cut(s) | 67, 475, 1432, 1504, 1764 |
| BpiI | GAAGAC | 4 cut(s) | 339, 900, 1509, 2067 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 869, 901 |
| BpmI | CTGGAG | 2 cut(s) | 2048, 2307 |
| Bpu10I | CCTNAGC | 4 cut(s) | 863, 2353, 2359, 2365 |
| BpuEI | CTTGAG | 4 cut(s) | 409, 919, 1016, 1827 |
| BpuMI | CCSGG | 7 cut(s) | 1195, 1388, 1444, 1716, 1766, 2260, 2289 |
| BsaAI | YACGTR | 1 cut(s) | 2080 |
| BsaBI | GATNNNNATC | 4 cut(s) | 57, 518, 1912, 2048 |
| BsaHI | GRCGYC | 2 cut(s) | 1056, 1900 |
| BsaI | GGTCTC | 2 cut(s) | 358, 889 |
| BsaWI | WCCGGW | 2 cut(s) | 313, 1300 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 313, 661, 1245, 1377, 1487, 1765, 2185 |
| Bse118I | RCCGGY | 2 cut(s) | 313, 1831 |
| Bse1I | ACTGG | 7 cut(s) | 135, 454, 1264, 1727, 1736, 2031, 2114 |
| Bse8I | GATNNNNATC | 4 cut(s) | 57, 518, 1912, 2048 |
| BseBI | CCWGG | 6 cut(s) | 379, 943, 1281, 1339, 1433, 1904 |
| BseGI | GGATG | 7 cut(s) | 811, 1164, 1426, 1554, 1913, 2049, 2136 |
| BseJI | GATNNNNATC | 4 cut(s) | 57, 518, 1912, 2048 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 313, 661, 1245, 1377, 1487, 1765, 2185 |
| BseMII | CTCAG | 9 cut(s) | 108, 539, 553, 854, 1908, 2220, 2367, 2373, 2379 |
| BseNI | ACTGG | 7 cut(s) | 135, 454, 1264, 1727, 1736, 2031, 2114 |
| BseRI | GAGGAG | 9 cut(s) | 246, 283, 346, 355, 622, 803, 1404, 1797, 2253 |
| BseX3I | CGGCCG | 1 cut(s) | 1829 |
| BsgI | GTGCAG | 3 cut(s) | 294, 1782, 1863 |
| Bsh1236I | CGCG | 3 cut(s) | 371, 401, 938 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1832 |
| BshNI | GGYRCC | 4 cut(s) | 116, 423, 1162, 1899 |
| BshTI | ACCGGT | 1 cut(s) | 313 |
| BsiEI | CGRYCG | 1 cut(s) | 1832 |
| BslFI | GGGAC | 4 cut(s) | 1193, 1741, 2083, 2201 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 313, 661, 1245, 1377, 1487, 1765, 2185 |
| BsmAI | GTCTC | 6 cut(s) | 358, 575, 872, 889, 1353, 1555 |
| BsmBI | CGTCTC | 3 cut(s) | 872, 1353, 1555 |
| BsmFI | GGGAC | 4 cut(s) | 1193, 1741, 2083, 2201 |
| Bso31I | GGTCTC | 2 cut(s) | 358, 889 |
| Bsp19I | CCATGG | 3 cut(s) | 120, 558, 843 |
| BspCNI | CTCAG | 9 cut(s) | 107, 538, 552, 855, 1909, 2219, 2366, 2372, 2378 |
| BspFNI | CGCG | 3 cut(s) | 371, 401, 938 |
| BspLI | GGNNCC | 9 cut(s) | 118, 162, 425, 556, 828, 1164, 1752, 1901, 2306 |
| BspMAI | CTGCAG | 1 cut(s) | 1944 |
| BspPI | GGATC | 4 cut(s) | 543, 606, 1635, 1833 |
| BspT107I | GGYRCC | 4 cut(s) | 116, 423, 1162, 1899 |
| BspTNI | GGTCTC | 2 cut(s) | 358, 889 |
| BsrFI | RCCGGY | 2 cut(s) | 313, 1831 |
| BsrI | ACTGG | 7 cut(s) | 135, 454, 1264, 1727, 1736, 2031, 2114 |
| BssAI | RCCGGY | 2 cut(s) | 313, 1831 |
| BssNI | GRCGYC | 2 cut(s) | 1056, 1900 |
| BssT1I | CCWWGG | 4 cut(s) | 120, 558, 843, 1154 |
| Bst2UI | CCWGG | 6 cut(s) | 379, 943, 1281, 1339, 1433, 1904 |
| Bst4CI | ACNGT | 5 cut(s) | 437, 883, 1696, 2099, 2385 |
| Bst6I | CTCTTC | 1 cut(s) | 1538 |
| BstACI | GRCGYC | 2 cut(s) | 1056, 1900 |
| BstBAI | YACGTR | 1 cut(s) | 2080 |
| BstC8I | GCNNGC | 7 cut(s) | 45, 492, 1833, 2256, 2313, 2317, 2329 |
| BstDEI | CTNAG | 9 cut(s) | 94, 525, 539, 863, 1917, 2206, 2353, 2359, 2365 |
| BstDSI | CCRYGG | 4 cut(s) | 120, 369, 558, 843 |
| BstF5I | GGATG | 7 cut(s) | 811, 1164, 1426, 1554, 1913, 2049, 2136 |
| BstFNI | CGCG | 3 cut(s) | 371, 401, 938 |
| BstH2I | RGCGCY | 3 cut(s) | 707, 1259, 1903 |
| BstHHI | GCGC | 7 cut(s) | 490, 706, 938, 1032, 1258, 1902, 2094 |
| BstMAI | GTCTC | 6 cut(s) | 358, 575, 872, 889, 1353, 1555 |
| BstMCI | CGRYCG | 1 cut(s) | 1832 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 209, 380, 485, 549, 1564, 1603, 1654, 1748, 1897 |
| BstNI | CCWGG | 6 cut(s) | 379, 943, 1281, 1339, 1433, 1904 |
| BstNSI | RCATGY | 6 cut(s) | 47, 280, 494, 1178, 2092, 2315 |
| BstSFI | CTRYAG | 2 cut(s) | 1940, 2095 |
| BstUI | CGCG | 3 cut(s) | 371, 401, 938 |
| BstV2I | GAAGAC | 4 cut(s) | 339, 900, 1509, 2067 |
| BstX2I | RGATCY | 5 cut(s) | 37, 52, 519, 535, 598 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 949, 1586, 2056 |
| BstYI | RGATCY | 5 cut(s) | 37, 52, 519, 535, 598 |
| BstZI | CGGCCG | 1 cut(s) | 1829 |
| BtgI | CCRYGG | 4 cut(s) | 120, 369, 558, 843 |
| BtgZI | GCGATG | 2 cut(s) | 590, 1977 |
| BtrI | CACGTC | 1 cut(s) | 2212 |
| BtsCI | GGATG | 7 cut(s) | 811, 1164, 1426, 1554, 1913, 2049, 2136 |
| BtsI | GCAGTG | 2 cut(s) | 735, 1737 |
| BtsIMutI | CAGTG | 2 cut(s) | 735, 1737 |
| Cac8I | GCNNGC | 7 cut(s) | 45, 492, 1833, 2256, 2313, 2317, 2329 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2109 |
| CfoI | GCGC | 7 cut(s) | 490, 706, 938, 1032, 1258, 1902, 2094 |
| Cfr10I | RCCGGY | 2 cut(s) | 313, 1831 |
| Cfr13I | GGNCC | 8 cut(s) | 160, 381, 1277, 1283, 1369, 1734, 1750, 2112 |
| Cfr42I | CCGCGG | 1 cut(s) | 372 |
| CseI | GACGC | 2 cut(s) | 407, 1064 |
| Csp6I | GTAC | 6 cut(s) | 457, 592, 1249, 1839, 2107, 2249 |
| CspAI | ACCGGT | 1 cut(s) | 313 |
| CviQI | GTAC | 6 cut(s) | 457, 592, 1249, 1839, 2107, 2249 |
| DdeI | CTNAG | 9 cut(s) | 94, 525, 539, 863, 1917, 2206, 2353, 2359, 2365 |
| DinI | GGCGCC | 1 cut(s) | 1901 |
| DraIII | CACNNNGTG | 1 cut(s) | 467 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2195 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2195 |
| EaeI | YGGCCR | 6 cut(s) | 324, 840, 939, 1340, 1767, 1829 |
| EagI | CGGCCG | 1 cut(s) | 1829 |
| Eam1104I | CTCTTC | 1 cut(s) | 1538 |
| EarI | CTCTTC | 1 cut(s) | 1538 |
| EciI | GGCGGA | 2 cut(s) | 567, 1206 |
| EclXI | CGGCCG | 1 cut(s) | 1829 |
| Eco130I | CCWWGG | 4 cut(s) | 120, 558, 843, 1154 |
| Eco31I | GGTCTC | 2 cut(s) | 358, 889 |
| Eco47I | GGWCC | 2 cut(s) | 160, 1283 |
| Eco52I | CGGCCG | 1 cut(s) | 1829 |
| Eco57I | CTGAAG | 2 cut(s) | 912, 1503 |
| Eco72I | CACGTG | 1 cut(s) | 2080 |
| EcoRII | CCWGG | 6 cut(s) | 377, 941, 1279, 1337, 1431, 1902 |
| EcoT14I | CCWWGG | 4 cut(s) | 120, 558, 843, 1154 |
| EcoT22I | ATGCAT | 1 cut(s) | 278 |
| EgeI | GGCGCC | 1 cut(s) | 1901 |
| EheI | GGCGCC | 1 cut(s) | 1901 |
| ErhI | CCWWGG | 4 cut(s) | 120, 558, 843, 1154 |
| Esp3I | CGTCTC | 3 cut(s) | 872, 1353, 1555 |
| FaqI | GGGAC | 4 cut(s) | 1193, 1741, 2083, 2201 |
| FbaI | TGATCA | 3 cut(s) | 472, 808, 1186 |
| FblI | GTMKAC | 1 cut(s) | 923 |
| FokI | GGATG | 7 cut(s) | 818, 1171, 1413, 1561, 1920, 2036, 2143 |
| FspAI | RTGCGCAY | 1 cut(s) | 489 |
| FspBI | CTAG | 6 cut(s) | 701, 1110, 1406, 1779, 1836, 2141 |
| FspI | TGCGCA | 1 cut(s) | 489 |
| GlaI | GCGC | 7 cut(s) | 489, 705, 937, 1031, 1257, 1901, 2093 |
| GsuI | CTGGAG | 2 cut(s) | 2048, 2307 |
| HaeII | RGCGCY | 3 cut(s) | 707, 1259, 1903 |
| HgaI | GACGC | 2 cut(s) | 407, 1064 |
| HhaI | GCGC | 7 cut(s) | 490, 706, 938, 1032, 1258, 1902, 2094 |
| Hin1I | GRCGYC | 2 cut(s) | 1056, 1900 |
| Hin6I | GCGC | 7 cut(s) | 488, 704, 936, 1030, 1256, 1900, 2092 |
| HinP1I | GCGC | 7 cut(s) | 488, 704, 936, 1030, 1256, 1900, 2092 |
| HincII | GTYRAC | 2 cut(s) | 924, 1273 |
| HindII | GTYRAC | 2 cut(s) | 924, 1273 |
| HinfI | GANTC | 5 cut(s) | 608, 1121, 1200, 1322, 2175 |
| HpaI | GTTAAC | 1 cut(s) | 1273 |
| HphI | GGTGA | 7 cut(s) | 56, 479, 1135, 1290, 1394, 1502, 2337 |
| Hpy166II | GTNNAC | 4 cut(s) | 160, 339, 924, 1273 |
| Hpy188I | TCNGA | 9 cut(s) | 97, 397, 535, 813, 1008, 1680, 1918, 2209, 2272 |
| Hpy188III | TCNNGA | 7 cut(s) | 35, 140, 388, 782, 916, 1118, 2021 |
| Hpy8I | GTNNAC | 4 cut(s) | 160, 339, 924, 1273 |
| Hpy99I | CGWCG | 2 cut(s) | 535, 1348 |
| HpyCH4III | ACNGT | 5 cut(s) | 437, 883, 1696, 2099, 2385 |
| HpyCH4IV | ACGT | 2 cut(s) | 2079, 2211 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 209, 380, 485, 549, 1564, 1603, 1654, 1748, 1897 |
| HpyF3I | CTNAG | 9 cut(s) | 94, 525, 539, 863, 1917, 2206, 2353, 2359, 2365 |
| HpySE526I | ACGT | 2 cut(s) | 2079, 2211 |
| Hsp92I | GRCGYC | 2 cut(s) | 1056, 1900 |
| HspAI | GCGC | 7 cut(s) | 488, 704, 936, 1030, 1256, 1900, 2092 |
| KasI | GGCGCC | 1 cut(s) | 1899 |
| KroI | GCCGGC | 1 cut(s) | 1831 |
| KroNI | GCCGGC | 1 cut(s) | 1833 |
| Ksp22I | TGATCA | 3 cut(s) | 472, 808, 1186 |
| KspAI | GTTAAC | 1 cut(s) | 1273 |
| KspI | CCGCGG | 1 cut(s) | 372 |
| LmnI | GCTCC | 3 cut(s) | 554, 664, 826 |
| LweI | GCATC | 5 cut(s) | 67, 475, 1432, 1504, 1764 |
| MaeI | CTAG | 6 cut(s) | 701, 1110, 1406, 1779, 1836, 2141 |
| MaeII | ACGT | 2 cut(s) | 2079, 2211 |
| MaeIII | GTNAC | 6 cut(s) | 437, 647, 1572, 1989, 2219, 2343 |
| MfeI | CAATTG | 1 cut(s) | 1499 |
| MflI | RGATCY | 5 cut(s) | 37, 52, 519, 535, 598 |
| MlsI | TGGCCA | 1 cut(s) | 842 |
| MluCI | AATT | 8 cut(s) | 148, 695, 713, 741, 1499, 1681, 1852, 1924 |
| MluNI | TGGCCA | 1 cut(s) | 842 |
| Mly113I | GGCGCC | 1 cut(s) | 1900 |
| MlyI | GAGTC | 3 cut(s) | 617, 1316, 2169 |
| MmeI | TCCRAC | 1 cut(s) | 513 |
| Mox20I | TGGCCA | 1 cut(s) | 842 |
| Mph1103I | ATGCAT | 1 cut(s) | 278 |
| MroNI | GCCGGC | 1 cut(s) | 1831 |
| MscI | TGGCCA | 1 cut(s) | 842 |
| MseI | TTAA | 4 cut(s) | 659, 984, 1272, 1611 |
| MslI | CAYNNNNRTG | 4 cut(s) | 842, 1584, 1611, 2054 |
| Msp20I | TGGCCA | 1 cut(s) | 842 |
| MspA1I | CMGCKG | 3 cut(s) | 371, 890, 2327 |
| MunI | CAATTG | 1 cut(s) | 1499 |
| MvaI | CCWGG | 6 cut(s) | 379, 943, 1281, 1339, 1433, 1904 |
| MvnI | CGCG | 3 cut(s) | 371, 401, 938 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 209, 380, 485, 549, 1564, 1603, 1654, 1748, 1897 |
| NaeI | GCCGGC | 1 cut(s) | 1833 |
| NarI | GGCGCC | 1 cut(s) | 1900 |
| NciI | CCSGG | 7 cut(s) | 1195, 1388, 1444, 1716, 1766, 2260, 2289 |
| NcoI | CCATGG | 3 cut(s) | 120, 558, 843 |
| NgoMIV | GCCGGC | 1 cut(s) | 1831 |
| NlaIV | GGNNCC | 9 cut(s) | 118, 162, 425, 556, 828, 1164, 1752, 1901, 2306 |
| NmuCI | GTSAC | 3 cut(s) | 647, 1572, 2343 |
| NsbI | TGCGCA | 1 cut(s) | 489 |
| NsiI | ATGCAT | 1 cut(s) | 278 |
| NspI | RCATGY | 6 cut(s) | 47, 280, 494, 1178, 2092, 2315 |
| PaeI | GCATGC | 3 cut(s) | 47, 494, 2315 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 341, 356, 1532 |
| PdiI | GCCGGC | 1 cut(s) | 1833 |
| PfeI | GAWTC | 2 cut(s) | 1121, 1200 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1487 |
| PfoI | TCCNGGA | 1 cut(s) | 1386 |
| PinAI | ACCGGT | 1 cut(s) | 313 |
| PleI | GAGTC | 3 cut(s) | 616, 1316, 2169 |
| PluTI | GGCGCC | 1 cut(s) | 1903 |
| PmaCI | CACGTG | 1 cut(s) | 2080 |
| PmlI | CACGTG | 1 cut(s) | 2080 |
| PpsI | GAGTC | 3 cut(s) | 616, 1316, 2169 |
| Ppu21I | YACGTR | 1 cut(s) | 2080 |
| Psp6I | CCWGG | 6 cut(s) | 377, 941, 1279, 1337, 1431, 1902 |
| PspCI | CACGTG | 1 cut(s) | 2080 |
| PspGI | CCWGG | 6 cut(s) | 377, 941, 1279, 1337, 1431, 1902 |
| PspN4I | GGNNCC | 9 cut(s) | 118, 162, 425, 556, 828, 1164, 1752, 1901, 2306 |
| PspPI | GGNCC | 8 cut(s) | 160, 381, 1277, 1283, 1369, 1734, 1750, 2112 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 2078, 2110 |
| PstI | CTGCAG | 1 cut(s) | 1944 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2109 |
| PsuI | RGATCY | 5 cut(s) | 37, 52, 519, 535, 598 |
| PvuII | CAGCTG | 1 cut(s) | 2327 |
| RsaI | GTAC | 6 cut(s) | 458, 593, 1250, 1840, 2108, 2250 |
| RsaNI | GTAC | 6 cut(s) | 457, 592, 1249, 1839, 2107, 2249 |
| RseI | CAYNNNNRTG | 4 cut(s) | 842, 1584, 1611, 2054 |
| SacII | CCGCGG | 1 cut(s) | 372 |
| SalI | GTCGAC | 1 cut(s) | 922 |
| SaqAI | TTAA | 4 cut(s) | 659, 984, 1272, 1611 |
| Sau96I | GGNCC | 8 cut(s) | 160, 381, 1277, 1283, 1369, 1734, 1750, 2112 |
| ScaI | AGTACT | 2 cut(s) | 458, 1840 |
| SchI | GAGTC | 3 cut(s) | 617, 1316, 2169 |
| SfaNI | GCATC | 5 cut(s) | 67, 475, 1432, 1504, 1764 |
| SfcI | CTRYAG | 2 cut(s) | 1940, 2095 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 380 |
| SfoI | GGCGCC | 1 cut(s) | 1901 |
| Sfr303I | CCGCGG | 1 cut(s) | 372 |
| SgrBI | CCGCGG | 1 cut(s) | 372 |
| SinI | GGWCC | 2 cut(s) | 160, 1283 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 842, 1584, 1611, 2054 |
| SmlI | CTYRAG | 4 cut(s) | 388, 898, 995, 1842 |
| SmoI | CTYRAG | 4 cut(s) | 388, 898, 995, 1842 |
| SphI | GCATGC | 3 cut(s) | 47, 494, 2315 |
| Sse9I | AATT | 8 cut(s) | 148, 695, 713, 741, 1499, 1681, 1852, 1924 |
| SspDI | GGCGCC | 1 cut(s) | 1899 |
| SspI | AATATT | 2 cut(s) | 85, 1475 |
| SspMI | CTAG | 6 cut(s) | 701, 1110, 1406, 1779, 1836, 2141 |
| StyI | CCWWGG | 4 cut(s) | 120, 558, 843, 1154 |
| TaaI | ACNGT | 5 cut(s) | 437, 883, 1696, 2099, 2385 |
| TaiI | ACGT | 2 cut(s) | 2082, 2214 |
| TaqI | TCGA | 4 cut(s) | 512, 606, 923, 930 |
| TaqII | GACCGA | 1 cut(s) | 340 |
| TasI | AATT | 8 cut(s) | 148, 695, 713, 741, 1499, 1681, 1852, 1924 |
| TatI | WGTACW | 2 cut(s) | 456, 1838 |
| TauI | GCSGC | 4 cut(s) | 374, 941, 1171, 1751 |
| TfiI | GAWTC | 2 cut(s) | 1121, 1200 |
| Tru1I | TTAA | 4 cut(s) | 659, 984, 1272, 1611 |
| Tru9I | TTAA | 4 cut(s) | 659, 984, 1272, 1611 |
| TscAI | CASTG | 2 cut(s) | 742, 1744 |
| TseFI | GTSAC | 3 cut(s) | 647, 1572, 2343 |
| Tsp45I | GTSAC | 3 cut(s) | 647, 1572, 2343 |
| TspDTI | ATGAA | 9 cut(s) | 14, 17, 47, 86, 321, 744, 986, 1628, 2182 |
| TspGWI | ACGGA | 1 cut(s) | 1341 |
| TspRI | CASTG | 2 cut(s) | 742, 1744 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1487 |
| VpaK11BI | GGWCC | 2 cut(s) | 160, 1283 |
| XapI | RAATTY | 1 cut(s) | 1924 |
| XceI | RCATGY | 6 cut(s) | 47, 280, 494, 1178, 2092, 2315 |
| XcmI | CCANNNNNNNNNTGG | 5 cut(s) | 127, 171, 511, 565, 850 |
| XmiI | GTMKAC | 1 cut(s) | 923 |
| XspI | CTAG | 6 cut(s) | 701, 1110, 1406, 1779, 1836, 2141 |
| ZrmI | AGTACT | 2 cut(s) | 458, 1840 |
| Zsp2I | ATGCAT | 1 cut(s) | 278 |