Rmu_co8422167.1_g000001

B3 domain-containing transcription factor

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8422167.1
Physical Location & Seq
Forward (+)
388 .. 1420
1033 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8422167.1_g000001.1.cds

Sequence Viewer

Length: 1033 bp
atggatggagtgcaagttcaagtccacggcaaccaccaccaagatctgcatggagaggatcaccacagccagcatctcgtcggcaaagaagtgatgcggaacgatttcggagaagaaggtgacgccgcagatctatggcttgataatgagcaagattctcttctcgctgacgtcaacgacggaactgcttccatcttctgcaatgacttccctcctctgcctgacttcccttgcatgtcatcctcttcatcttcgtcttcgactcgggtgccggtgaagaccgtgtcgtcgtcttcctcggcatcttcgtcttcttccgcggcttcctgggcggttctcaaatcagatgcggaggataataacaattatcattctcaagattatcagcagcaacaagacaacaacaacaattactactctcgtaacgattcggttgatgcacatccggcgggggcgttgtcctccaccgcctcgatggagatctctcagccgtcagatctcggaatggagtgcatggacatgatggagactttcgggtacatagatctgttcgaaggcaacgagttgttcgacccgtcttccattttccaaaacgagaatccaatgatggaccaattccaagcgcaggagcaacctcctcaggaacagctgcatgcagacaatcaaacctcacacccacaagagaacatgaccatgggagatcagagcaacaaggttccggaggacgacatggcgtctgtgttcttggagtggctgaggtcaaaccgagagacggtttcagccgaggatttgaggagcgtgaagatcaagaagtcaacaatcgagtccgccgctaggcgtttgggtggaggcaaagaggcgatgaagcagttactcaaactggtgcttgagtgggttcaaactaaccatctccaaaagaggcgcggtactaaagactcggggatacaacagtatgcagtagacccatttcaaaacgccatccctaaccctaaccctagtcttaatcctacacaaaatcctcccataacatcgc

Protein Analysis

344

Amino Acids

38.13

Weight (kDa)

4.5

Isoelectric Point (pI)

55.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 286
AatII GACGTC 1 cut(s) 174
AccB1I GGYRCC 1 cut(s) 268
AccI GTMKAC 1 cut(s) 960
AccII CGCG 2 cut(s) 320, 924
AccIII TCCGGA 1 cut(s) 718
AclWI GGATC 1 cut(s) 66
AcyI GRCGYC 3 cut(s) 123, 171, 734
AfaI GTAC 2 cut(s) 539, 928
AfiI CCNNNNNNNGG 3 cut(s) 625, 772, 834
AgsI TTSAA 3 cut(s) 20, 899, 971
AhdI GACNNNNNGTC 1 cut(s) 733
AjnI CCWGG 1 cut(s) 326
AloI GAACNNNNNNTCC 1 cut(s) 32
AluBI AGCT 1 cut(s) 649
AluI AGCT 1 cut(s) 649
Alw26I GTCTC 2 cut(s) 521, 764
AlwI GGATC 1 cut(s) 66
Ama87I CYCGRG 2 cut(s) 264, 937
Aor13HI TCCGGA 1 cut(s) 718
ApeKI GCWGC 2 cut(s) 388, 649
Asp700I GAANNNNTTC 2 cut(s) 104, 187
AspLEI GCGC 2 cut(s) 625, 924
AspS9I GGNCC 1 cut(s) 610
AsuHPI GGTGA 3 cut(s) 53, 131, 286
AsuII TTCGAA 1 cut(s) 552
AvaI CYCGRG 2 cut(s) 264, 937
AvaII GGWCC 1 cut(s) 610
AxyI CCTNAGG 1 cut(s) 639
BaeI ACNNNNGTAYC 2 cut(s) 935, 968
BanI GGYRCC 1 cut(s) 268
BbsI GAAGAC 5 cut(s) 249, 284, 285, 303, 570
BbvCI CCTCAGC 1 cut(s) 755
BbvI GCAGC 2 cut(s) 400, 636
BccI CCATC 6 cut(s) 200, 469, 517, 601, 915, 986
BceAI ACGGC 2 cut(s) 43, 475
BcgI CGANNNNNNTGC 4 cut(s) 167, 201, 250, 284
BciT130I CCWGG 1 cut(s) 328
BciVI GTATCC 1 cut(s) 936
BcoDI GTCTC 2 cut(s) 521, 764
BfaI CTAG 2 cut(s) 834, 996
BfuI GTATCC 1 cut(s) 936
BglII AGATCT 5 cut(s) 43, 130, 480, 496, 544
BisI GCNGC 5 cut(s) 126, 321, 389, 650, 831
BlsI GCNGC 5 cut(s) 127, 322, 390, 651, 832
Bme1390I CCNGG 1 cut(s) 328
Bme18I GGWCC 1 cut(s) 610
BmeRI GACNNNNNGTC 1 cut(s) 733
BmeT110I CYCGRG 2 cut(s) 264, 937
BmgT120I GGNCC 1 cut(s) 610
BmiI GGNNCC 2 cut(s) 270, 717
BmrFI CCNGG 1 cut(s) 328
BmsI GCATC 5 cut(s) 82, 84, 311, 337, 427
BpiI GAAGAC 5 cut(s) 249, 284, 285, 303, 570
Bpu10I CCTNAGC 1 cut(s) 755
Bpu14I TTCGAA 1 cut(s) 552
BpuEI CTTGAG 2 cut(s) 360, 908
BsaBI GATNNNNATC 2 cut(s) 441, 479
BsaHI GRCGYC 3 cut(s) 123, 171, 734
BsaJI CCNNGG 6 cut(s) 25, 297, 318, 327, 693, 783
BsaWI WCCGGW 1 cut(s) 718
BsaXI ACNNNNNCTCC 1 cut(s) 30
Bsc4I CCNNNNNNNGG 3 cut(s) 625, 772, 834
Bse118I RCCGGY 1 cut(s) 271
Bse1I ACTGG 1 cut(s) 885
Bse21I CCTNAGG 1 cut(s) 639
Bse3DI GCAATG 1 cut(s) 208
Bse8I GATNNNNATC 2 cut(s) 441, 479
BseAI TCCGGA 1 cut(s) 718
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 6 cut(s) 25, 297, 318, 327, 693, 783
BseGI GGATG 4 cut(s) 10, 239, 442, 978
BseJI GATNNNNATC 2 cut(s) 441, 479
BseLI CCNNNNNNNGG 3 cut(s) 625, 772, 834
BseMI GCAATG 1 cut(s) 208
BseMII CTCAG 3 cut(s) 500, 653, 746
BseNI ACTGG 1 cut(s) 885
BseRI GAGGAG 3 cut(s) 204, 627, 808
BseXI GCAGC 2 cut(s) 400, 636
Bsh1236I CGCG 2 cut(s) 320, 924
BshNI GGYRCC 1 cut(s) 268
BsiHKCI CYCGRG 2 cut(s) 264, 937
BsiSI CCGG 3 cut(s) 272, 446, 719
BslI CCNNNNNNNGG 3 cut(s) 625, 772, 834
BsmAI GTCTC 2 cut(s) 521, 764
BsmBI CGTCTC 1 cut(s) 764
BsoBI CYCGRG 2 cut(s) 264, 937
Bsp119I TTCGAA 1 cut(s) 552
Bsp13I TCCGGA 1 cut(s) 718
Bsp143I GATC 8 cut(s) 43, 58, 130, 480, 496, 544, 700, 804
Bsp19I CCATGG 1 cut(s) 693
BspCNI CTCAG 3 cut(s) 499, 652, 747
BspEI TCCGGA 1 cut(s) 718
BspFNI CGCG 2 cut(s) 320, 924
BspLI GGNNCC 2 cut(s) 270, 717
BspPI GGATC 1 cut(s) 66
BspT104I TTCGAA 1 cut(s) 552
BspT107I GGYRCC 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 271
BsrI ACTGG 1 cut(s) 885
BssAI RCCGGY 1 cut(s) 271
BssECI CCNNGG 6 cut(s) 25, 297, 318, 327, 693, 783
BssMI GATC 8 cut(s) 43, 58, 130, 480, 496, 544, 700, 804
BssNI GRCGYC 3 cut(s) 123, 171, 734
BssT1I CCWWGG 1 cut(s) 693
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 3 cut(s) 283, 775, 951
Bst6I CTCTTC 2 cut(s) 165, 250
BstACI GRCGYC 3 cut(s) 123, 171, 734
BstBI TTCGAA 1 cut(s) 552
BstC8I GCNNGC 2 cut(s) 71, 654
BstDEI CTNAG 3 cut(s) 486, 639, 755
BstDSI CCRYGG 3 cut(s) 25, 318, 693
BstF5I GGATG 4 cut(s) 10, 239, 442, 978
BstFNI CGCG 2 cut(s) 320, 924
BstHHI GCGC 2 cut(s) 625, 924
BstKTI GATC 8 cut(s) 46, 61, 133, 483, 499, 547, 703, 807
BstMAI GTCTC 2 cut(s) 521, 764
BstMBI GATC 8 cut(s) 43, 58, 130, 480, 496, 544, 700, 804
BstMWI GCNNNNNNNGC 2 cut(s) 329, 446
BstNI CCWGG 1 cut(s) 328
BstNSI RCATGY 2 cut(s) 238, 656
BstSCI CCNGG 1 cut(s) 326
BstUI CGCG 2 cut(s) 320, 924
BstV1I GCAGC 2 cut(s) 400, 636
BstV2I GAAGAC 5 cut(s) 249, 284, 285, 303, 570
BstX2I RGATCY 5 cut(s) 43, 130, 480, 496, 544
BstYI RGATCY 5 cut(s) 43, 130, 480, 496, 544
Bsu36I CCTNAGG 1 cut(s) 639
BsuI GTATCC 1 cut(s) 936
BtgI CCRYGG 3 cut(s) 25, 318, 693
BtgZI GCGATG 2 cut(s) 875, 1014
BtsCI GGATG 4 cut(s) 10, 239, 442, 978
Cac8I GCNNGC 2 cut(s) 71, 654
CfoI GCGC 2 cut(s) 625, 924
Cfr10I RCCGGY 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 610
Cfr42I CCGCGG 1 cut(s) 321
CseI GACGC 2 cut(s) 131, 723
Csp6I GTAC 2 cut(s) 538, 927
CviAII CATG 8 cut(s) 50, 235, 514, 520, 653, 688, 694, 730
CviJI RGCY 7 cut(s) 69, 139, 323, 490, 649, 754, 782
CviKI_1 RGCY 7 cut(s) 69, 139, 323, 490, 649, 754, 782
CviQI GTAC 2 cut(s) 538, 927
DdeI CTNAG 3 cut(s) 486, 639, 755
DpnI GATC 8 cut(s) 45, 60, 132, 482, 498, 546, 702, 806
DpnII GATC 8 cut(s) 43, 58, 130, 480, 496, 544, 700, 804
DrdI GACNNNNNNGTC 1 cut(s) 286
DriI GACNNNNNGTC 1 cut(s) 733
DseDI GACNNNNNNGTC 1 cut(s) 286
Eam1104I CTCTTC 2 cut(s) 165, 250
Eam1105I GACNNNNNGTC 1 cut(s) 733
EarI CTCTTC 2 cut(s) 165, 250
EciI GGCGGA 1 cut(s) 817
Eco130I CCWWGG 1 cut(s) 693
Eco47I GGWCC 1 cut(s) 610
Eco81I CCTNAGG 1 cut(s) 639
Eco88I CYCGRG 2 cut(s) 264, 937
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 693
ErhI CCWWGG 1 cut(s) 693
Esp3I CGTCTC 1 cut(s) 764
FaeI CATG 8 cut(s) 53, 238, 517, 523, 656, 691, 697, 733
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FatI CATG 8 cut(s) 49, 234, 513, 519, 652, 687, 693, 729
FauI CCCGC 1 cut(s) 442
FblI GTMKAC 1 cut(s) 960
Fnu4HI GCNGC 5 cut(s) 126, 321, 389, 650, 831
FokI GGATG 4 cut(s) 17, 226, 429, 965
Fsp4HI GCNGC 5 cut(s) 126, 321, 389, 650, 831
FspBI CTAG 2 cut(s) 834, 996
GlaI GCGC 2 cut(s) 624, 923
GluI GCNGC 5 cut(s) 126, 321, 389, 650, 831
HapII CCGG 3 cut(s) 272, 446, 719
HgaI GACGC 2 cut(s) 131, 723
HhaI GCGC 2 cut(s) 625, 924
Hin1I GRCGYC 3 cut(s) 123, 171, 734
Hin1II CATG 8 cut(s) 53, 238, 517, 523, 656, 691, 697, 733
Hin6I GCGC 2 cut(s) 623, 922
HinP1I GCGC 2 cut(s) 623, 922
HincII GTYRAC 2 cut(s) 175, 816
HindII GTYRAC 2 cut(s) 175, 816
HinfI GANTC 6 cut(s) 155, 262, 428, 598, 824, 935
HpaII CCGG 3 cut(s) 272, 446, 719
HphI GGTGA 3 cut(s) 53, 131, 286
Hpy166II GTNNAC 4 cut(s) 25, 175, 816, 961
Hpy188I TCNGA 5 cut(s) 110, 346, 496, 503, 705
Hpy188III TCNNGA 4 cut(s) 377, 641, 719, 808
Hpy8I GTNNAC 4 cut(s) 25, 175, 816, 961
Hpy99I CGWCG 3 cut(s) 83, 182, 292
HpyAV CCTTC 2 cut(s) 110, 548
HpyCH4III ACNGT 3 cut(s) 283, 775, 951
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 9 cut(s) 13, 49, 201, 234, 440, 513, 652, 656, 956
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 446
HpyF3I CTNAG 3 cut(s) 486, 639, 755
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 3 cut(s) 123, 171, 734
Hsp92II CATG 8 cut(s) 53, 238, 517, 523, 656, 691, 697, 733
HspAI GCGC 2 cut(s) 623, 922
Kpn2I TCCGGA 1 cut(s) 718
KspI CCGCGG 1 cut(s) 321
Kzo9I GATC 8 cut(s) 43, 58, 130, 480, 496, 544, 700, 804
LmnI GCTCC 2 cut(s) 628, 795
Lsp1109I GCAGC 2 cut(s) 400, 636
LweI GCATC 5 cut(s) 82, 84, 311, 337, 427
MaeI CTAG 2 cut(s) 834, 996
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 3 cut(s) 119, 422, 870
MalI GATC 8 cut(s) 45, 60, 132, 482, 498, 546, 702, 806
MboI GATC 8 cut(s) 43, 58, 130, 480, 496, 544, 700, 804
MflI RGATCY 5 cut(s) 43, 130, 480, 496, 544
MluCI AATT 3 cut(s) 364, 409, 614
MlyI GAGTC 3 cut(s) 256, 833, 929
MroI TCCGGA 1 cut(s) 718
MroXI GAANNNNTTC 2 cut(s) 104, 187
MseI TTAA 1 cut(s) 1002
MslI CAYNNNNRTG 2 cut(s) 518, 692
MspA1I CMGCKG 2 cut(s) 320, 649
MspI CCGG 3 cut(s) 272, 446, 719
MspR9I CCNGG 1 cut(s) 328
MvaI CCWGG 1 cut(s) 328
MvnI CGCG 2 cut(s) 320, 924
MwoI GCNNNNNNNGC 2 cut(s) 329, 446
NcoI CCATGG 1 cut(s) 693
NdeII GATC 8 cut(s) 43, 58, 130, 480, 496, 544, 700, 804
NlaIII CATG 8 cut(s) 53, 238, 517, 523, 656, 691, 697, 733
NlaIV GGNNCC 2 cut(s) 270, 717
NmeAIII GCCGAG 2 cut(s) 278, 808
NmuCI GTSAC 1 cut(s) 119
NspI RCATGY 2 cut(s) 238, 656
NspV TTCGAA 1 cut(s) 552
PaeI GCATGC 1 cut(s) 656
PcsI WCGNNNNNNNCGW 3 cut(s) 305, 558, 567
PdmI GAANNNNTTC 2 cut(s) 104, 187
PfeI GAWTC 3 cut(s) 155, 428, 598
PflFI GACNNNGTC 1 cut(s) 283
PkrI GCNGC 5 cut(s) 127, 322, 390, 651, 832
PleI GAGTC 3 cut(s) 256, 832, 929
PpsI GAGTC 3 cut(s) 256, 832, 929
Psp6I CCWGG 1 cut(s) 326
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 2 cut(s) 270, 717
PspPI GGNCC 1 cut(s) 610
PsuI RGATCY 5 cut(s) 43, 130, 480, 496, 544
PsyI GACNNNGTC 1 cut(s) 283
PvuII CAGCTG 1 cut(s) 649
RsaI GTAC 2 cut(s) 539, 928
RsaNI GTAC 2 cut(s) 538, 927
RseI CAYNNNNRTG 2 cut(s) 518, 692
SacII CCGCGG 1 cut(s) 321
SaqAI TTAA 1 cut(s) 1002
SatI GCNGC 5 cut(s) 126, 321, 389, 650, 831
Sau3AI GATC 8 cut(s) 43, 58, 130, 480, 496, 544, 700, 804
Sau96I GGNCC 1 cut(s) 610
SchI GAGTC 3 cut(s) 256, 833, 929
ScrFI CCNGG 1 cut(s) 328
SetI ASST 7 cut(s) 121, 174, 637, 651, 671, 717, 761
SfaNI GCATC 5 cut(s) 82, 84, 311, 337, 427
Sfr303I CCGCGG 1 cut(s) 321
SfuI TTCGAA 1 cut(s) 552
SgrBI CCGCGG 1 cut(s) 321
SinI GGWCC 1 cut(s) 610
SmiMI CAYNNNNRTG 2 cut(s) 518, 692
SmlI CTYRAG 2 cut(s) 375, 887
SmoI CTYRAG 2 cut(s) 375, 887
SphI GCATGC 1 cut(s) 656
Sse9I AATT 3 cut(s) 364, 409, 614
SspMI CTAG 2 cut(s) 834, 996
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 1 cut(s) 693
TaaI ACNGT 3 cut(s) 283, 775, 951
TaiI ACGT 1 cut(s) 174
TaqI TCGA 5 cut(s) 260, 473, 552, 570, 822
TasI AATT 3 cut(s) 364, 409, 614
TauI GCSGC 3 cut(s) 128, 323, 833
TfiI GAWTC 3 cut(s) 155, 428, 598
Tru1I TTAA 1 cut(s) 1002
Tru9I TTAA 1 cut(s) 1002
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 2 cut(s) 388, 649
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 2 cut(s) 237, 878
TspGWI ACGGA 1 cut(s) 195
Tth111I GACNNNGTC 1 cut(s) 283
VpaK11BI GGWCC 1 cut(s) 610
XceI RCATGY 2 cut(s) 238, 656
XcmI CCANNNNNNNNNTGG 2 cut(s) 47, 472
XmiI GTMKAC 1 cut(s) 960
XmnI GAANNNNTTC 2 cut(s) 104, 187
XspI CTAG 2 cut(s) 834, 996
ZraI GACGTC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.