Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8482611.1

Orthogroup ID

OG0008051

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1679

Gene Structure 1679 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8482611.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

tcagatcaataccagcatcaaatgctagagactgcaccaacctggccgccttcatctccatttatgggcaacaattatggatctttcccggatagtaatatccaactagcacctcctcagcatcagcaaccgctttccggttacggagggcagtatggtcagtatcaatattttcaagggcaatcaggtgagccgcagctggtgaggttagggtcttcggcaactaaagaggctaggaagaagaggatgcaaaggcagagaaggactttgtcacaccaccatggaaggcatcatggacaccaacagaatcagcatcctaatcaaatgccggatcaaaggctagttgggaacgccgatcacaattgcactactgccgcaatgggcaatccggctgcttctaactggttttattggcccaccacggcggctgctggtcctgatcctgcagcctcaccggcaatgatgcaaacgatggctcccgaggcagcaccattggtgcttccagttgatcgtccggccagtcaagggcagaattataatccgggccggattaatacacaggaaaggcgacagggatggagacctgagaataagaatttgaggttccttcttcagaaagtgttgaagcaaagtgatgtgggcaatcttggaagaattgttttgccaaaagtaaaagaagccgaaacccatcttcctgagttagaggcaagggacggaatttcaattgcgatggaagacatcgggacttctcgtgtatggaacatgcgctataggtacggcaagcggggactaaatcagagaccaaaaggccaggaaagtcgcaaaggaaccaacatgcaagcactccatctggcaacaatggttcgtcatctaagaaacagtaaaggaagaaagaagaagaagaaggagaaggaagctgaattcttcagagaaacccagctagctcaaccgcccttccggcaaagatggtctagggttgttggaatgcagagcagcccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000988 GO:0000989 GO:0001076 GO:0001101 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009657 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010154 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031930 GO:0032501 GO:0032502 GO:0033993 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071840 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230

Pfam Domains

Protein Families

Protein Analysis

333

Amino Acids

37.81

Weight (kDa)

10.35

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008051)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24650
fragaria_vesca	FvH4_2g19630 FvH4_2g19630
malus_domestica	MD05G1181100.v1.1 MD10G1169900.v1.1
prunus_persica	Prupe.8G207700_v2.0.a1 Prupe.8G207700_v2.0.a1 Prupe.8G207700_v2.0.a1 Prupe.8G207700_v2.0.a1 Prupe.8G207700_v2.0.a1 Prupe.8G207700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0285371
rosa_laevigata	RLG00000012648
rosa_multiflora	Rmu_co8422167.1_g000001 Rmu_co8482611.1_g000001 Rmu_sc0006662.1_g000002 Rmu_sc0012535.1_g000011
rosa_roxburghii	Rroxscaffold_7G00183310
rosa_rugosa	Rorug06G0173900
rosa_samantha	Rh6AG284600 Rh6BG285800 Rh6CG286900 Rh6DG279900
rosa_wichuraiana	Rw6G024500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	537
AciI	CCGC	7 cut(s)	47, 131, 194, 375, 425, 784, 950
AclWI	GGATC	3 cut(s)	88, 339, 434
AcoI	YGGCCR	2 cut(s)	44, 516
AcsI	RAATTY	3 cut(s)	595, 717, 920
AcuI	CTGAAG	2 cut(s)	596, 910
AfaI	GTAC	1 cut(s)	776
AfiI	CCNNNNNNNGG	3 cut(s)	65, 137, 525
AgsI	TTSAA	3 cut(s)	176, 625, 723
AjnI	CCWGG	2 cut(s)	41, 810
AluBI	AGCT	4 cut(s)	199, 917, 940, 944
AluI	AGCT	4 cut(s)	199, 917, 940, 944
Alw26I	GTCTC	3 cut(s)	23, 574, 793
AlwI	GGATC	3 cut(s)	88, 339, 434
Ama87I	CYCGRG	1 cut(s)	479
AoxI	GGCC	5 cut(s)	44, 413, 516, 544, 808
ApeKI	GCWGC	6 cut(s)	196, 392, 428, 446, 485, 993
ApoI	RAATTY	3 cut(s)	595, 717, 920
AseI	ATTAAT	1 cut(s)	552
AspLEI	GCGC	1 cut(s)	768
AspS9I	GGNCC	3 cut(s)	414, 434, 544
AsuC2I	CCSGG	2 cut(s)	89, 543
AsuHPI	GGTGA	3 cut(s)	200, 214, 444
AsuNHI	GCTAGC	1 cut(s)	940
AvaI	CYCGRG	1 cut(s)	479
AvaII	GGWCC	1 cut(s)	434
BauI	CACGAG	1 cut(s)	750
BbsI	GAAGAC	2 cut(s)	207, 741
BbvCI	CCTCAGC	1 cut(s)	117
BbvI	GCAGC	5 cut(s)	208, 379, 415, 458, 497
BccI	CCATC	6 cut(s)	466, 570, 696, 724, 855, 960
BceAI	ACGGC	2 cut(s)	438, 793
BciT130I	CCWGG	2 cut(s)	43, 812
BcnI	CCSGG	2 cut(s)	89, 543
BcoDI	GTCTC	3 cut(s)	23, 574, 793
BfaI	CTAG	6 cut(s)	26, 107, 234, 341, 941, 972
BfmI	CTRYAG	2 cut(s)	444, 769
BglI	GCCNNNNNGGC	2 cut(s)	455, 958
Bme1390I	CCNGG	4 cut(s)	43, 89, 543, 812
Bme18I	GGWCC	1 cut(s)	434
BmeT110I	CYCGRG	1 cut(s)	479
BmgT120I	GGNCC	3 cut(s)	414, 434, 544
BmiI	GGNNCC	3 cut(s)	477, 605, 829
BmrFI	CCNGG	4 cut(s)	43, 89, 543, 812
BmsI	GCATC	6 cut(s)	25, 130, 237, 298, 322, 453
BmtI	GCTAGC	1 cut(s)	944
BpiI	GAAGAC	2 cut(s)	207, 741
Bpu10I	CCTNAGC	1 cut(s)	117
BpuMI	CCSGG	2 cut(s)	89, 543
BsaI	GGTCTC	2 cut(s)	574, 793
BsaJI	CCNNGG	3 cut(s)	280, 420, 480
BsaWI	WCCGGW	1 cut(s)	137
BsaXI	ACNNNNNCTCC	2 cut(s)	460, 490
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 137, 525
Bse118I	RCCGGY	1 cut(s)	454
Bse1I	ACTGG	3 cut(s)	407, 503, 519
Bse3DI	GCAATG	2 cut(s)	384, 465
BseBI	CCWGG	2 cut(s)	43, 812
BseDI	CCNNGG	3 cut(s)	280, 420, 480
BseGI	GGATG	3 cut(s)	252, 313, 581
BseLI	CCNNNNNNNGG	3 cut(s)	65, 137, 525
BseMI	GCAATG	2 cut(s)	384, 465
BseMII	CTCAG	3 cut(s)	131, 576, 687
BseNI	ACTGG	3 cut(s)	407, 503, 519
BseRI	GAGGAG	1 cut(s)	105
BseXI	GCAGC	5 cut(s)	208, 379, 415, 458, 497
BseYI	CCCAGC	1 cut(s)	936
BsgI	GTGCAG	1 cut(s)	18
BshFI	GGCC	5 cut(s)	46, 415, 518, 546, 810
BsiHKCI	CYCGRG	1 cut(s)	479
BsiSI	CCGG	9 cut(s)	89, 138, 329, 389, 455, 515, 542, 547, 958
BslFI	GGGAC	3 cut(s)	725, 757, 801
BslI	CCNNNNNNNGG	3 cut(s)	65, 137, 525
BsmAI	GTCTC	3 cut(s)	23, 574, 793
BsmFI	GGGAC	3 cut(s)	725, 757, 801
BsmI	GAATGC	1 cut(s)	990
BsnI	GGCC	5 cut(s)	46, 415, 518, 546, 810
Bso31I	GGTCTC	2 cut(s)	574, 793
BsoBI	CYCGRG	1 cut(s)	479
Bsp143I	GATC	6 cut(s)	4, 80, 331, 355, 439, 508
Bsp19I	CCATGG	1 cut(s)	280
BspACI	CCGC	7 cut(s)	47, 131, 194, 375, 425, 784, 950
BspANI	GGCC	5 cut(s)	46, 415, 518, 546, 810
BspCNI	CTCAG	3 cut(s)	130, 577, 688
BspLI	GGNNCC	3 cut(s)	477, 605, 829
BspMAI	CTGCAG	1 cut(s)	448
BspOI	GCTAGC	1 cut(s)	944
BspPI	GGATC	3 cut(s)	88, 339, 434
BspTNI	GGTCTC	2 cut(s)	574, 793
BsrDI	GCAATG	2 cut(s)	384, 465
BsrFI	RCCGGY	1 cut(s)	454
BsrI	ACTGG	3 cut(s)	407, 503, 519
BssAI	RCCGGY	1 cut(s)	454
BssECI	CCNNGG	3 cut(s)	280, 420, 480
BssMI	GATC	6 cut(s)	4, 80, 331, 355, 439, 508
BssSI	CACGAG	1 cut(s)	750
BssT1I	CCWWGG	1 cut(s)	280
Bst2BI	CACGAG	1 cut(s)	750
Bst2UI	CCWGG	2 cut(s)	43, 812
Bst4CI	ACNGT	1 cut(s)	881
Bst6I	CTCTTC	1 cut(s)	236
BstAPI	GCANNNNNTGC	1 cut(s)	22
BstC8I	GCNNGC	3 cut(s)	782, 840, 942
BstDEI	CTNAG	4 cut(s)	117, 585, 696, 872
BstDSI	CCRYGG	2 cut(s)	280, 420
BstF5I	GGATG	3 cut(s)	252, 313, 581
BstHHI	GCGC	1 cut(s)	768
BstKTI	GATC	6 cut(s)	7, 83, 334, 358, 442, 511
BstMAI	GTCTC	3 cut(s)	23, 574, 793
BstMBI	GATC	6 cut(s)	4, 80, 331, 355, 439, 508
BstMWI	GCNNNNNNNGC	4 cut(s)	22, 455, 482, 958
BstNI	CCWGG	2 cut(s)	43, 812
BstNSI	RCATGY	2 cut(s)	766, 838
BstSCI	CCNGG	4 cut(s)	41, 87, 541, 810
BstSFI	CTRYAG	2 cut(s)	444, 769
BstV1I	GCAGC	5 cut(s)	208, 379, 415, 458, 497
BstV2I	GAAGAC	2 cut(s)	207, 741
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuRI	GGCC	5 cut(s)	46, 415, 518, 546, 810
BtgI	CCRYGG	2 cut(s)	280, 420
BtgZI	GCGATG	1 cut(s)	743
BtsCI	GGATG	3 cut(s)	252, 313, 581
Cac8I	GCNNGC	3 cut(s)	782, 840, 942
CfoI	GCGC	1 cut(s)	768
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	3 cut(s)	414, 434, 544
Csp6I	GTAC	1 cut(s)	775
CviAII	CATG	4 cut(s)	281, 293, 763, 835
CviQI	GTAC	1 cut(s)	775
DdeI	CTNAG	4 cut(s)	117, 585, 696, 872
DpnI	GATC	6 cut(s)	6, 82, 333, 357, 441, 510
DpnII	GATC	6 cut(s)	4, 80, 331, 355, 439, 508
EaeI	YGGCCR	2 cut(s)	44, 516
Eam1104I	CTCTTC	1 cut(s)	236
EarI	CTCTTC	1 cut(s)	236
Eco130I	CCWWGG	1 cut(s)	280
Eco31I	GGTCTC	2 cut(s)	574, 793
Eco47I	GGWCC	1 cut(s)	434
Eco57I	CTGAAG	2 cut(s)	596, 910
Eco88I	CYCGRG	1 cut(s)	479
EcoRI	GAATTC	1 cut(s)	920
EcoRII	CCWGG	2 cut(s)	41, 810
EcoT14I	CCWWGG	1 cut(s)	280
ErhI	CCWWGG	1 cut(s)	280
FaeI	CATG	4 cut(s)	284, 296, 766, 838
FaqI	GGGAC	3 cut(s)	725, 757, 801
FatI	CATG	4 cut(s)	280, 292, 762, 834
FauI	CCCGC	1 cut(s)	777
FokI	GGATG	3 cut(s)	259, 300, 588
FspBI	CTAG	6 cut(s)	26, 107, 234, 341, 941, 972
GlaI	GCGC	1 cut(s)	767
GsaI	CCCAGC	1 cut(s)	940
HaeIII	GGCC	5 cut(s)	46, 415, 518, 546, 810
HapII	CCGG	9 cut(s)	89, 138, 329, 389, 455, 515, 542, 547, 958
HhaI	GCGC	1 cut(s)	768
Hin1II	CATG	4 cut(s)	284, 296, 766, 838
Hin6I	GCGC	1 cut(s)	766
HinP1I	GCGC	1 cut(s)	766
HinfI	GANTC	1 cut(s)	307
HpaII	CCGG	9 cut(s)	89, 138, 329, 389, 455, 515, 542, 547, 958
HphI	GGTGA	3 cut(s)	200, 214, 444
Hpy188I	TCNGA	4 cut(s)	4, 615, 798, 929
Hpy188III	TCNNGA	4 cut(s)	437, 479, 695, 742
HpyAV	CCTTC	7 cut(s)	60, 255, 279, 617, 898, 904, 964
HpyCH4III	ACNGT	1 cut(s)	881
HpyCH4V	TGCA	7 cut(s)	35, 250, 366, 446, 466, 838, 988
HpyF10VI	GCNNNNNNNGC	4 cut(s)	22, 455, 482, 958
HpyF3I	CTNAG	4 cut(s)	117, 585, 696, 872
Hsp92II	CATG	4 cut(s)	284, 296, 766, 838
HspAI	GCGC	1 cut(s)	766
Kzo9I	GATC	6 cut(s)	4, 80, 331, 355, 439, 508
LmnI	GCTCC	1 cut(s)	481
Lsp1109I	GCAGC	5 cut(s)	208, 379, 415, 458, 497
LweI	GCATC	6 cut(s)	25, 130, 237, 298, 322, 453
MaeI	CTAG	6 cut(s)	26, 107, 234, 341, 941, 972
MaeIII	GTNAC	2 cut(s)	140, 270
MalI	GATC	6 cut(s)	6, 82, 333, 357, 441, 510
MboI	GATC	6 cut(s)	4, 80, 331, 355, 439, 508
MfeI	CAATTG	2 cut(s)	361, 723
MflI	RGATCY	1 cut(s)	80
MluCI	AATT	8 cut(s)	73, 361, 532, 595, 654, 717, 723, 920
MmeI	TCCRAC	2 cut(s)	127, 961
MseI	TTAA	1 cut(s)	552
MslI	CAYNNNNRTG	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	9 cut(s)	89, 138, 329, 389, 455, 515, 542, 547, 958
MspR9I	CCNGG	4 cut(s)	43, 89, 543, 812
MunI	CAATTG	2 cut(s)	361, 723
Mva1269I	GAATGC	1 cut(s)	990
MvaI	CCWGG	2 cut(s)	43, 812
MwoI	GCNNNNNNNGC	4 cut(s)	22, 455, 482, 958
NciI	CCSGG	2 cut(s)	89, 543
NcoI	CCATGG	1 cut(s)	280
NdeII	GATC	6 cut(s)	4, 80, 331, 355, 439, 508
NheI	GCTAGC	1 cut(s)	940
NlaIII	CATG	4 cut(s)	284, 296, 766, 838
NlaIV	GGNNCC	3 cut(s)	477, 605, 829
NmuCI	GTSAC	1 cut(s)	270
NspI	RCATGY	2 cut(s)	766, 838
PctI	GAATGC	1 cut(s)	990
PfeI	GAWTC	1 cut(s)	307
PflFI	GACNNNGTC	1 cut(s)	268
PfoI	TCCNGGA	1 cut(s)	87
PshBI	ATTAAT	1 cut(s)	552
PsiI	TTATAA	1 cut(s)	537
Psp6I	CCWGG	2 cut(s)	41, 810
PspFI	CCCAGC	1 cut(s)	936
PspGI	CCWGG	2 cut(s)	41, 810
PspN4I	GGNNCC	3 cut(s)	477, 605, 829
PspPI	GGNCC	3 cut(s)	414, 434, 544
PstI	CTGCAG	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	80
PsyI	GACNNNGTC	1 cut(s)	268
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	776
RsaNI	GTAC	1 cut(s)	775
RseI	CAYNNNNRTG	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	552
Sau3AI	GATC	6 cut(s)	4, 80, 331, 355, 439, 508
Sau96I	GGNCC	3 cut(s)	414, 434, 544
ScrFI	CCNGG	4 cut(s)	43, 89, 543, 812
SfaNI	GCATC	6 cut(s)	25, 130, 237, 298, 322, 453
SfcI	CTRYAG	2 cut(s)	444, 769
SinI	GGWCC	1 cut(s)	434
SmiMI	CAYNNNNRTG	1 cut(s)	279
Sse9I	AATT	8 cut(s)	73, 361, 532, 595, 654, 717, 723, 920
SsiI	CCGC	7 cut(s)	47, 131, 194, 375, 425, 784, 950
SspI	AATATT	1 cut(s)	170
SspMI	CTAG	6 cut(s)	26, 107, 234, 341, 941, 972
StyD4I	CCNGG	4 cut(s)	41, 87, 541, 810
StyI	CCWWGG	1 cut(s)	280
TaaI	ACNGT	1 cut(s)	881
TasI	AATT	8 cut(s)	73, 361, 532, 595, 654, 717, 723, 920
TauI	GCSGC	4 cut(s)	49, 196, 377, 428
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TseFI	GTSAC	1 cut(s)	270
TseI	GCWGC	6 cut(s)	196, 392, 428, 446, 485, 993
Tsp45I	GTSAC	1 cut(s)	270
TspDTI	ATGAA	1 cut(s)	42
TspGWI	ACGGA	2 cut(s)	159, 729
Tth111I	GACNNNGTC	1 cut(s)	268
VpaK11BI	GGWCC	1 cut(s)	434
VspI	ATTAAT	1 cut(s)	552
XapI	RAATTY	3 cut(s)	595, 717, 920
XceI	RCATGY	2 cut(s)	766, 838
XspI	CTAG	6 cut(s)	26, 107, 234, 341, 941, 972

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.