Domain of unknown function (DUF4378)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G63430 AT3G63430 |
| fragaria_vesca | FvH4_2g22810 FvH4_2g22810 FvH4_2g22810 |
| malus_domestica | MD03G1256300.v1.1 MD11G1277100.v1.1 |
| prunus_persica | Prupe.8G233400_v2.0.a1 |
| pyrus_communis | pycom03g20300 pycom03g20310 pycom11g24510 |
| rosa_chinensis | RchiOBHm_Chr6g0289731 |
| rosa_laevigata | RLG00000012272 |
| rosa_multiflora | Rmu_co8011000.1_g000001 Rmu_sc0005640.1_g000024 |
| rosa_roxburghii | Rroxscaffold_7G00177610 Rroxscaffold_7G00178110 |
| rosa_rugosa | Rorug06G0206100 |
| rosa_samantha | Rh6AG318000 Rh6BG325300 Rh6CG330900 Rh6DG316600 |
| rosa_wichuraiana | Rw6G027400 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 238, 2278 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 31 |
| AccI | GTMKAC | 4 cut(s) | 444, 681, 1065, 1827 |
| AccII | CGCG | 6 cut(s) | 161, 488, 1143, 1145, 1295, 1694 |
| AccIII | TCCGGA | 3 cut(s) | 624, 886, 2067 |
| AclI | AACGTT | 1 cut(s) | 977 |
| AclWI | GGATC | 6 cut(s) | 469, 599, 612, 797, 810, 1834 |
| AcoI | YGGCCR | 1 cut(s) | 150 |
| AcsI | RAATTY | 5 cut(s) | 303, 365, 721, 1977, 2043 |
| AcyI | GRCGYC | 2 cut(s) | 239, 2279 |
| AfaI | GTAC | 1 cut(s) | 1263 |
| AflIII | ACRYGT | 2 cut(s) | 1692, 1770 |
| AgsI | TTSAA | 9 cut(s) | 370, 698, 982, 1753, 1760, 1938, 2146, 2198, 2212 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 958 |
| AjnI | CCWGG | 4 cut(s) | 30, 185, 1025, 1118 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1066, 1098 |
| Alw21I | GWGCWC | 3 cut(s) | 285, 773, 1389 |
| Alw26I | GTCTC | 7 cut(s) | 345, 409, 910, 1225, 1483, 1684, 2151 |
| AlwI | GGATC | 6 cut(s) | 469, 599, 612, 797, 810, 1834 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 31 |
| Ama87I | CYCGRG | 5 cut(s) | 400, 466, 1237, 1288, 1943 |
| Aor13HI | TCCGGA | 3 cut(s) | 624, 886, 2067 |
| AoxI | GGCC | 4 cut(s) | 150, 1012, 1112, 1193 |
| ApoI | RAATTY | 5 cut(s) | 303, 365, 721, 1977, 2043 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1805, 1837 |
| AseI | ATTAAT | 1 cut(s) | 1047 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 860 |
| AspLEI | GCGC | 8 cut(s) | 241, 412, 503, 814, 1145, 1295, 1297, 2281 |
| AspS9I | GGNCC | 6 cut(s) | 763, 1194, 1340, 1794, 2049, 2125 |
| AsuC2I | CCSGG | 1 cut(s) | 1197 |
| AsuII | TTCGAA | 1 cut(s) | 363 |
| AvaI | CYCGRG | 5 cut(s) | 400, 466, 1237, 1288, 1943 |
| AvaII | GGWCC | 5 cut(s) | 763, 1340, 1794, 2049, 2125 |
| AxyI | CCTNAGG | 1 cut(s) | 1416 |
| BamHI | GGATCC | 2 cut(s) | 604, 802 |
| BanI | GGYRCC | 2 cut(s) | 238, 2278 |
| BanII | GRGCYC | 5 cut(s) | 285, 773, 785, 1238, 1676 |
| BauI | CACGAG | 1 cut(s) | 379 |
| BbsI | GAAGAC | 2 cut(s) | 1773, 1818 |
| Bbv12I | GWGCWC | 3 cut(s) | 285, 773, 1389 |
| BccI | CCATC | 6 cut(s) | 515, 1465, 1518, 1581, 1976, 2145 |
| BciT130I | CCWGG | 4 cut(s) | 32, 187, 1027, 1120 |
| BcnI | CCSGG | 1 cut(s) | 1197 |
| BcoDI | GTCTC | 7 cut(s) | 345, 409, 910, 1225, 1483, 1684, 2151 |
| BfaI | CTAG | 4 cut(s) | 1892, 1982, 2022, 2265 |
| BfmI | CTRYAG | 1 cut(s) | 593 |
| BfoI | RGCGCY | 4 cut(s) | 242, 413, 815, 2282 |
| BglII | AGATCT | 4 cut(s) | 81, 629, 658, 2239 |
| Bme1390I | CCNGG | 5 cut(s) | 32, 187, 1027, 1120, 1197 |
| Bme18I | GGWCC | 5 cut(s) | 763, 1340, 1794, 2049, 2125 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 958 |
| BmeT110I | CYCGRG | 5 cut(s) | 400, 466, 1237, 1288, 1943 |
| BmgT120I | GGNCC | 6 cut(s) | 763, 1194, 1340, 1794, 2049, 2125 |
| BmiI | GGNNCC | 9 cut(s) | 240, 529, 606, 784, 804, 891, 1084, 1795, 2280 |
| BmrFI | CCNGG | 5 cut(s) | 32, 187, 1027, 1120, 1197 |
| BmrI | ACTGGG | 1 cut(s) | 1670 |
| BmsI | GCATC | 3 cut(s) | 395, 2128, 2170 |
| BmuI | ACTGGG | 1 cut(s) | 1670 |
| BpiI | GAAGAC | 2 cut(s) | 1773, 1818 |
| BpmI | CTGGAG | 5 cut(s) | 53, 62, 1009, 1710, 1912 |
| Bpu14I | TTCGAA | 1 cut(s) | 363 |
| BpuMI | CCSGG | 1 cut(s) | 1197 |
| BsaAI | YACGTR | 1 cut(s) | 1831 |
| BsaBI | GATNNNNATC | 1 cut(s) | 663 |
| BsaHI | GRCGYC | 2 cut(s) | 239, 2279 |
| BsaI | GGTCTC | 2 cut(s) | 1225, 1483 |
| BsaJI | CCNNGG | 6 cut(s) | 144, 153, 467, 1238, 1475, 2006 |
| BsaWI | WCCGGW | 8 cut(s) | 107, 298, 624, 765, 886, 1252, 1864, 2067 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 755, 785, 1066, 1096 |
| Bse118I | RCCGGY | 3 cut(s) | 1225, 1402, 1992 |
| Bse1I | ACTGG | 3 cut(s) | 504, 1676, 1727 |
| Bse21I | CCTNAGG | 1 cut(s) | 1416 |
| Bse3DI | GCAATG | 3 cut(s) | 564, 754, 1791 |
| Bse8I | GATNNNNATC | 1 cut(s) | 663 |
| BseAI | TCCGGA | 3 cut(s) | 624, 886, 2067 |
| BseBI | CCWGG | 4 cut(s) | 32, 187, 1027, 1120 |
| BseDI | CCNNGG | 6 cut(s) | 144, 153, 467, 1238, 1475, 2006 |
| BseGI | GGATG | 6 cut(s) | 945, 1457, 1510, 1528, 1529, 2143 |
| BseJI | GATNNNNATC | 1 cut(s) | 663 |
| BseMI | GCAATG | 3 cut(s) | 564, 754, 1791 |
| BseMII | CTCAG | 2 cut(s) | 528, 1491 |
| BseNI | ACTGG | 3 cut(s) | 504, 1676, 1727 |
| BsePI | GCGCGC | 1 cut(s) | 1293 |
| BseRI | GAGGAG | 4 cut(s) | 333, 540, 1630, 1963 |
| BseX3I | CGGCCG | 1 cut(s) | 150 |
| BseYI | CCCAGC | 1 cut(s) | 2132 |
| BsgI | GTGCAG | 1 cut(s) | 1004 |
| Bsh1236I | CGCG | 6 cut(s) | 161, 488, 1143, 1145, 1295, 1694 |
| Bsh1285I | CGRYCG | 7 cut(s) | 91, 153, 257, 554, 1072, 1253, 2169 |
| BshFI | GGCC | 4 cut(s) | 152, 1014, 1114, 1195 |
| BshNI | GGYRCC | 2 cut(s) | 238, 2278 |
| BsiEI | CGRYCG | 7 cut(s) | 91, 153, 257, 554, 1072, 1253, 2169 |
| BsiHKAI | GWGCWC | 3 cut(s) | 285, 773, 1389 |
| BsiHKCI | CYCGRG | 5 cut(s) | 400, 466, 1237, 1288, 1943 |
| BslFI | GGGAC | 3 cut(s) | 594, 1807, 2090 |
| BsmAI | GTCTC | 7 cut(s) | 345, 409, 910, 1225, 1483, 1684, 2151 |
| BsmBI | CGTCTC | 1 cut(s) | 910 |
| BsmFI | GGGAC | 3 cut(s) | 594, 1807, 2090 |
| BsmI | GAATGC | 1 cut(s) | 2141 |
| BsnI | GGCC | 4 cut(s) | 152, 1014, 1114, 1195 |
| Bso31I | GGTCTC | 2 cut(s) | 1225, 1483 |
| BsoBI | CYCGRG | 5 cut(s) | 400, 466, 1237, 1288, 1943 |
| Bsp119I | TTCGAA | 1 cut(s) | 363 |
| Bsp1286I | GDGCHC | 6 cut(s) | 285, 773, 785, 1238, 1389, 1676 |
| Bsp13I | TCCGGA | 3 cut(s) | 624, 886, 2067 |
| BspANI | GGCC | 4 cut(s) | 152, 1014, 1114, 1195 |
| BspCNI | CTCAG | 2 cut(s) | 527, 1492 |
| BspEI | TCCGGA | 3 cut(s) | 624, 886, 2067 |
| BspFNI | CGCG | 6 cut(s) | 161, 488, 1143, 1145, 1295, 1694 |
| BspLI | GGNNCC | 9 cut(s) | 240, 529, 606, 784, 804, 891, 1084, 1795, 2280 |
| BspMAI | CTGCAG | 1 cut(s) | 597 |
| BspPI | GGATC | 6 cut(s) | 469, 599, 612, 797, 810, 1834 |
| BspQI | GCTCTTC | 1 cut(s) | 851 |
| BspT104I | TTCGAA | 1 cut(s) | 363 |
| BspT107I | GGYRCC | 2 cut(s) | 238, 2278 |
| BspTNI | GGTCTC | 2 cut(s) | 1225, 1483 |
| BsrDI | GCAATG | 3 cut(s) | 564, 754, 1791 |
| BsrFI | RCCGGY | 3 cut(s) | 1225, 1402, 1992 |
| BsrI | ACTGG | 3 cut(s) | 504, 1676, 1727 |
| BssAI | RCCGGY | 3 cut(s) | 1225, 1402, 1992 |
| BssECI | CCNNGG | 6 cut(s) | 144, 153, 467, 1238, 1475, 2006 |
| BssHII | GCGCGC | 1 cut(s) | 1293 |
| BssNI | GRCGYC | 2 cut(s) | 239, 2279 |
| BssSI | CACGAG | 1 cut(s) | 379 |
| Bst2BI | CACGAG | 1 cut(s) | 379 |
| Bst2UI | CCWGG | 4 cut(s) | 32, 187, 1027, 1120 |
| Bst4CI | ACNGT | 4 cut(s) | 442, 1214, 1344, 2162 |
| Bst6I | CTCTTC | 5 cut(s) | 351, 357, 851, 1570, 2066 |
| BstACI | GRCGYC | 2 cut(s) | 239, 2279 |
| BstBAI | YACGTR | 1 cut(s) | 1831 |
| BstBI | TTCGAA | 1 cut(s) | 363 |
| BstC8I | GCNNGC | 3 cut(s) | 70, 1295, 1782 |
| BstDEI | CTNAG | 3 cut(s) | 514, 1416, 1500 |
| BstDSI | CCRYGG | 2 cut(s) | 153, 2006 |
| BstEII | GGTNACC | 1 cut(s) | 1470 |
| BstF5I | GGATG | 6 cut(s) | 945, 1457, 1510, 1528, 1529, 2143 |
| BstFNI | CGCG | 6 cut(s) | 161, 488, 1143, 1145, 1295, 1694 |
| BstH2I | RGCGCY | 4 cut(s) | 242, 413, 815, 2282 |
| BstHHI | GCGC | 8 cut(s) | 241, 412, 503, 814, 1145, 1295, 1297, 2281 |
| BstMAI | GTCTC | 7 cut(s) | 345, 409, 910, 1225, 1483, 1684, 2151 |
| BstMCI | CGRYCG | 7 cut(s) | 91, 153, 257, 554, 1072, 1253, 2169 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 69, 158, 553, 712, 1557, 1897, 2002, 2138 |
| BstNI | CCWGG | 4 cut(s) | 32, 187, 1027, 1120 |
| BstNSI | RCATGY | 1 cut(s) | 1774 |
| BstPI | GGTNACC | 1 cut(s) | 1470 |
| BstSCI | CCNGG | 5 cut(s) | 30, 185, 1025, 1118, 1195 |
| BstSFI | CTRYAG | 1 cut(s) | 593 |
| BstSNI | TACGTA | 1 cut(s) | 1831 |
| BstUI | CGCG | 6 cut(s) | 161, 488, 1143, 1145, 1295, 1694 |
| BstV2I | GAAGAC | 2 cut(s) | 1773, 1818 |
| BstX2I | RGATCY | 8 cut(s) | 81, 474, 604, 629, 658, 802, 1839, 2239 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 211 |
| BstYI | RGATCY | 8 cut(s) | 81, 474, 604, 629, 658, 802, 1839, 2239 |
| BstZI | CGGCCG | 1 cut(s) | 150 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1416 |
| BsuRI | GGCC | 4 cut(s) | 152, 1014, 1114, 1195 |
| BtgI | CCRYGG | 2 cut(s) | 153, 2006 |
| BtsCI | GGATG | 6 cut(s) | 945, 1457, 1510, 1528, 1529, 2143 |
| BtsIMutI | CAGTG | 3 cut(s) | 1449, 1734, 1971 |
| Cac8I | GCNNGC | 3 cut(s) | 70, 1295, 1782 |
| CaiI | CAGNNNCTG | 1 cut(s) | 31 |
| CfoI | GCGC | 8 cut(s) | 241, 412, 503, 814, 1145, 1295, 1297, 2281 |
| Cfr10I | RCCGGY | 3 cut(s) | 1225, 1402, 1992 |
| Cfr13I | GGNCC | 6 cut(s) | 763, 1194, 1340, 1794, 2049, 2125 |
| CseI | GACGC | 7 cut(s) | 150, 455, 550, 624, 892, 1683, 1700 |
| CsiI | ACCWGGT | 1 cut(s) | 185 |
| Csp6I | GTAC | 1 cut(s) | 1262 |
| CviAII | CATG | 5 cut(s) | 13, 64, 390, 1540, 1771 |
| CviQI | GTAC | 1 cut(s) | 1262 |
| DdeI | CTNAG | 3 cut(s) | 514, 1416, 1500 |
| DinI | GGCGCC | 2 cut(s) | 240, 2280 |
| DriI | GACNNNNNGTC | 1 cut(s) | 958 |
| EaeI | YGGCCR | 1 cut(s) | 150 |
| EagI | CGGCCG | 1 cut(s) | 150 |
| Eam1104I | CTCTTC | 5 cut(s) | 351, 357, 851, 1570, 2066 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 958 |
| EarI | CTCTTC | 5 cut(s) | 351, 357, 851, 1570, 2066 |
| EciI | GGCGGA | 1 cut(s) | 890 |
| Ecl136II | GAGCTC | 2 cut(s) | 283, 771 |
| EclXI | CGGCCG | 1 cut(s) | 150 |
| Eco105I | TACGTA | 1 cut(s) | 1831 |
| Eco147I | AGGCCT | 1 cut(s) | 1014 |
| Eco24I | GRGCYC | 5 cut(s) | 285, 773, 785, 1238, 1676 |
| Eco31I | GGTCTC | 2 cut(s) | 1225, 1483 |
| Eco32I | GATATC | 1 cut(s) | 201 |
| Eco47I | GGWCC | 5 cut(s) | 763, 1340, 1794, 2049, 2125 |
| Eco52I | CGGCCG | 1 cut(s) | 150 |
| Eco53kI | GAGCTC | 2 cut(s) | 283, 771 |
| Eco81I | CCTNAGG | 1 cut(s) | 1416 |
| Eco88I | CYCGRG | 5 cut(s) | 400, 466, 1237, 1288, 1943 |
| Eco91I | GGTNACC | 1 cut(s) | 1470 |
| EcoICRI | GAGCTC | 2 cut(s) | 283, 771 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2125 |
| EcoO65I | GGTNACC | 1 cut(s) | 1470 |
| EcoRI | GAATTC | 1 cut(s) | 365 |
| EcoRII | CCWGG | 4 cut(s) | 30, 185, 1025, 1118 |
| EcoRV | GATATC | 1 cut(s) | 201 |
| EcoT22I | ATGCAT | 1 cut(s) | 2143 |
| EcoT38I | GRGCYC | 5 cut(s) | 285, 773, 785, 1238, 1676 |
| EgeI | GGCGCC | 2 cut(s) | 240, 2280 |
| EheI | GGCGCC | 2 cut(s) | 240, 2280 |
| Esp3I | CGTCTC | 1 cut(s) | 910 |
| FaeI | CATG | 5 cut(s) | 16, 67, 393, 1543, 1774 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 848, 880 |
| FaqI | GGGAC | 3 cut(s) | 594, 1807, 2090 |
| FatI | CATG | 5 cut(s) | 12, 63, 389, 1539, 1770 |
| FauI | CCCGC | 1 cut(s) | 2102 |
| FauNDI | CATATG | 1 cut(s) | 2105 |
| FblI | GTMKAC | 4 cut(s) | 444, 681, 1065, 1827 |
| FokI | GGATG | 6 cut(s) | 952, 1444, 1497, 1516, 1535, 2150 |
| FriOI | GRGCYC | 5 cut(s) | 285, 773, 785, 1238, 1676 |
| FspBI | CTAG | 4 cut(s) | 1892, 1982, 2022, 2265 |
| GlaI | GCGC | 8 cut(s) | 240, 411, 502, 813, 1144, 1294, 1296, 2280 |
| GsaI | CCCAGC | 1 cut(s) | 2136 |
| GsuI | CTGGAG | 5 cut(s) | 53, 62, 1009, 1710, 1912 |
| HaeII | RGCGCY | 4 cut(s) | 242, 413, 815, 2282 |
| HaeIII | GGCC | 4 cut(s) | 152, 1014, 1114, 1195 |
| HgaI | GACGC | 7 cut(s) | 150, 455, 550, 624, 892, 1683, 1700 |
| HhaI | GCGC | 8 cut(s) | 241, 412, 503, 814, 1145, 1295, 1297, 2281 |
| Hin1I | GRCGYC | 2 cut(s) | 239, 2279 |
| Hin1II | CATG | 5 cut(s) | 16, 67, 393, 1543, 1774 |
| Hin6I | GCGC | 8 cut(s) | 239, 410, 501, 812, 1143, 1293, 1295, 2279 |
| HinP1I | GCGC | 8 cut(s) | 239, 410, 501, 812, 1143, 1293, 1295, 2279 |
| HincII | GTYRAC | 4 cut(s) | 180, 276, 445, 682 |
| HindII | GTYRAC | 4 cut(s) | 180, 276, 445, 682 |
| Hpy166II | GTNNAC | 9 cut(s) | 180, 276, 445, 652, 682, 913, 1066, 1408, 1828 |
| Hpy8I | GTNNAC | 9 cut(s) | 180, 276, 445, 652, 682, 913, 1066, 1408, 1828 |
| HpyAV | CCTTC | 8 cut(s) | 150, 368, 802, 820, 1360, 1585, 1731, 2005 |
| HpyCH4III | ACNGT | 4 cut(s) | 442, 1214, 1344, 2162 |
| HpyCH4IV | ACGT | 2 cut(s) | 977, 1830 |
| HpyCH4V | TGCA | 8 cut(s) | 19, 63, 595, 727, 1003, 1021, 1666, 2141 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 69, 158, 553, 712, 1557, 1897, 2002, 2138 |
| HpyF3I | CTNAG | 3 cut(s) | 514, 1416, 1500 |
| HpySE526I | ACGT | 2 cut(s) | 977, 1830 |
| Hsp92I | GRCGYC | 2 cut(s) | 239, 2279 |
| Hsp92II | CATG | 5 cut(s) | 16, 67, 393, 1543, 1774 |
| HspAI | GCGC | 8 cut(s) | 239, 410, 501, 812, 1143, 1293, 1295, 2279 |
| KasI | GGCGCC | 2 cut(s) | 238, 2278 |
| Kpn2I | TCCGGA | 3 cut(s) | 624, 886, 2067 |
| LguI | GCTCTTC | 1 cut(s) | 851 |
| LweI | GCATC | 3 cut(s) | 395, 2128, 2170 |
| MabI | ACCWGGT | 1 cut(s) | 185 |
| MaeI | CTAG | 4 cut(s) | 1892, 1982, 2022, 2265 |
| MaeII | ACGT | 2 cut(s) | 977, 1830 |
| MaeIII | GTNAC | 5 cut(s) | 162, 294, 1136, 1244, 1470 |
| MflI | RGATCY | 8 cut(s) | 81, 474, 604, 629, 658, 802, 1839, 2239 |
| MhlI | GDGCHC | 6 cut(s) | 285, 773, 785, 1238, 1389, 1676 |
| MluCI | AATT | 9 cut(s) | 209, 303, 365, 721, 1048, 1805, 1855, 1977, 2043 |
| MluI | ACGCGT | 1 cut(s) | 1692 |
| Mly113I | GGCGCC | 2 cut(s) | 239, 2279 |
| MlyI | GAGTC | 7 cut(s) | 111, 185, 411, 576, 1144, 1172, 1339 |
| MmeI | TCCRAC | 3 cut(s) | 780, 1110, 1313 |
| Mph1103I | ATGCAT | 1 cut(s) | 2143 |
| MroI | TCCGGA | 3 cut(s) | 624, 886, 2067 |
| MroXI | GAANNNNTTC | 1 cut(s) | 860 |
| MseI | TTAA | 3 cut(s) | 330, 816, 1047 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1538 |
| MspA1I | CMGCKG | 3 cut(s) | 226, 592, 1517 |
| MspR9I | CCNGG | 5 cut(s) | 32, 187, 1027, 1120, 1197 |
| Mva1269I | GAATGC | 1 cut(s) | 2141 |
| MvaI | CCWGG | 4 cut(s) | 32, 187, 1027, 1120 |
| MvnI | CGCG | 6 cut(s) | 161, 488, 1143, 1145, 1295, 1694 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 69, 158, 553, 712, 1557, 1897, 2002, 2138 |
| NarI | GGCGCC | 2 cut(s) | 239, 2279 |
| NciI | CCSGG | 1 cut(s) | 1197 |
| NdeI | CATATG | 1 cut(s) | 2105 |
| NlaIII | CATG | 5 cut(s) | 16, 67, 393, 1543, 1774 |
| NlaIV | GGNNCC | 9 cut(s) | 240, 529, 606, 784, 804, 891, 1084, 1795, 2280 |
| NmeAIII | GCCGAG | 6 cut(s) | 125, 438, 556, 582, 1152, 1197 |
| NmuCI | GTSAC | 5 cut(s) | 162, 294, 1136, 1244, 1470 |
| NsiI | ATGCAT | 1 cut(s) | 2143 |
| NspI | RCATGY | 1 cut(s) | 1774 |
| NspV | TTCGAA | 1 cut(s) | 363 |
| PaeR7I | CTCGAG | 2 cut(s) | 400, 1943 |
| PauI | GCGCGC | 1 cut(s) | 1293 |
| PceI | AGGCCT | 1 cut(s) | 1014 |
| PciI | ACATGT | 1 cut(s) | 1770 |
| PciSI | GCTCTTC | 1 cut(s) | 851 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 488, 1130, 2175 |
| PctI | GAATGC | 1 cut(s) | 2141 |
| PdmI | GAANNNNTTC | 1 cut(s) | 860 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 31 |
| PfoI | TCCNGGA | 1 cut(s) | 1025 |
| Ple19I | CGATCG | 5 cut(s) | 91, 257, 554, 1072, 2169 |
| PleI | GAGTC | 7 cut(s) | 111, 184, 411, 576, 1143, 1171, 1338 |
| PluTI | GGCGCC | 2 cut(s) | 242, 2282 |
| PpsI | GAGTC | 7 cut(s) | 111, 184, 411, 576, 1143, 1171, 1338 |
| Ppu21I | YACGTR | 1 cut(s) | 1831 |
| PpuMI | RGGWCCY | 1 cut(s) | 2125 |
| PscI | ACATGT | 1 cut(s) | 1770 |
| PshBI | ATTAAT | 1 cut(s) | 1047 |
| Psp124BI | GAGCTC | 2 cut(s) | 285, 773 |
| Psp1406I | AACGTT | 1 cut(s) | 977 |
| Psp5II | RGGWCCY | 1 cut(s) | 2125 |
| Psp6I | CCWGG | 4 cut(s) | 30, 185, 1025, 1118 |
| PspEI | GGTNACC | 1 cut(s) | 1470 |
| PspFI | CCCAGC | 1 cut(s) | 2132 |
| PspGI | CCWGG | 4 cut(s) | 30, 185, 1025, 1118 |
| PspN4I | GGNNCC | 9 cut(s) | 240, 529, 606, 784, 804, 891, 1084, 1795, 2280 |
| PspPI | GGNCC | 6 cut(s) | 763, 1194, 1340, 1794, 2049, 2125 |
| PspPPI | RGGWCCY | 1 cut(s) | 2125 |
| PstI | CTGCAG | 1 cut(s) | 597 |
| PstNI | CAGNNNCTG | 1 cut(s) | 31 |
| PsuI | RGATCY | 8 cut(s) | 81, 474, 604, 629, 658, 802, 1839, 2239 |
| PteI | GCGCGC | 1 cut(s) | 1293 |
| PvuI | CGATCG | 5 cut(s) | 91, 257, 554, 1072, 2169 |
| RsaI | GTAC | 1 cut(s) | 1263 |
| RsaNI | GTAC | 1 cut(s) | 1262 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1538 |
| SacI | GAGCTC | 2 cut(s) | 285, 773 |
| SalI | GTCGAC | 2 cut(s) | 443, 680 |
| SapI | GCTCTTC | 1 cut(s) | 851 |
| SaqAI | TTAA | 3 cut(s) | 330, 816, 1047 |
| Sau96I | GGNCC | 6 cut(s) | 763, 1194, 1340, 1794, 2049, 2125 |
| SchI | GAGTC | 7 cut(s) | 111, 185, 411, 576, 1144, 1172, 1339 |
| ScrFI | CCNGG | 5 cut(s) | 32, 187, 1027, 1120, 1197 |
| SduI | GDGCHC | 6 cut(s) | 285, 773, 785, 1238, 1389, 1676 |
| SexAI | ACCWGGT | 1 cut(s) | 185 |
| SfaNI | GCATC | 3 cut(s) | 395, 2128, 2170 |
| SfcI | CTRYAG | 1 cut(s) | 593 |
| SfoI | GGCGCC | 2 cut(s) | 240, 2280 |
| Sfr274I | CTCGAG | 2 cut(s) | 400, 1943 |
| SfuI | TTCGAA | 1 cut(s) | 363 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1225 |
| SgrDI | CGTCGACG | 2 cut(s) | 443, 680 |
| SinI | GGWCC | 5 cut(s) | 763, 1340, 1794, 2049, 2125 |
| SlaI | CTCGAG | 2 cut(s) | 400, 1943 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1538 |
| SmlI | CTYRAG | 2 cut(s) | 400, 1943 |
| SmoI | CTYRAG | 2 cut(s) | 400, 1943 |
| SnaBI | TACGTA | 1 cut(s) | 1831 |
| Sse9I | AATT | 9 cut(s) | 209, 303, 365, 721, 1048, 1805, 1855, 1977, 2043 |
| SseBI | AGGCCT | 1 cut(s) | 1014 |
| SspDI | GGCGCC | 2 cut(s) | 238, 2278 |
| SspI | AATATT | 1 cut(s) | 739 |
| SspMI | CTAG | 4 cut(s) | 1892, 1982, 2022, 2265 |
| SstI | GAGCTC | 2 cut(s) | 285, 773 |
| StuI | AGGCCT | 1 cut(s) | 1014 |
| StyD4I | CCNGG | 5 cut(s) | 30, 185, 1025, 1118, 1195 |
| TaaI | ACNGT | 4 cut(s) | 442, 1214, 1344, 2162 |
| TaiI | ACGT | 2 cut(s) | 980, 1833 |
| TaqII | GACCGA | 5 cut(s) | 267, 1263, 1458, 1811, 2001 |
| TasI | AATT | 9 cut(s) | 209, 303, 365, 721, 1048, 1805, 1855, 1977, 2043 |
| TauI | GCSGC | 5 cut(s) | 152, 491, 1148, 1171, 2005 |
| Tru1I | TTAA | 3 cut(s) | 330, 816, 1047 |
| Tru9I | TTAA | 3 cut(s) | 330, 816, 1047 |
| TscAI | CASTG | 3 cut(s) | 1449, 1734, 1978 |
| TseFI | GTSAC | 5 cut(s) | 162, 294, 1136, 1244, 1470 |
| Tsp45I | GTSAC | 5 cut(s) | 162, 294, 1136, 1244, 1470 |
| TspDTI | ATGAA | 2 cut(s) | 1539, 1748 |
| TspGWI | ACGGA | 5 cut(s) | 261, 282, 293, 303, 1222 |
| TspRI | CASTG | 3 cut(s) | 1449, 1734, 1978 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 31 |
| VpaK11BI | GGWCC | 5 cut(s) | 763, 1340, 1794, 2049, 2125 |
| VspI | ATTAAT | 1 cut(s) | 1047 |
| XapI | RAATTY | 5 cut(s) | 303, 365, 721, 1977, 2043 |
| XbaI | TCTAGA | 1 cut(s) | 1981 |
| XceI | RCATGY | 1 cut(s) | 1774 |
| XhoI | CTCGAG | 2 cut(s) | 400, 1943 |
| XmiI | GTMKAC | 4 cut(s) | 444, 681, 1065, 1827 |
| XmnI | GAANNNNTTC | 1 cut(s) | 860 |
| XspI | CTAG | 4 cut(s) | 1892, 1982, 2022, 2265 |
| Zsp2I | ATGCAT | 1 cut(s) | 2143 |