Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8011000.1

Orthogroup ID

OG0008556

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 443

Gene Structure 442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8011000.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 442 bp

atgccgaggctctcactcgatagcagagccaccgtggacgcaaagggaagcctgtacccgaaggagatccgtaccaacgctgcgatattgtcagccaaccgaagcgtgaactccggcgacggagcaattgacggagacaagaatcaccgctcgcctagcgtcattgccaggctaatgggactcgaaccgttgccgcaatcggatcccgaaccgatcaagctccggagatctgcgtcagagtccagagtgaacagagatctgtaccagccacggtccgtggacagcaataattttcaggcaaggcaaccgcagcagccgaatttgaagagcaataactgcggcaatgtaggcagagaggatcggagctgcaatactagacaggtagatccgaaatcttacaatgtgaaagctcaaaacaggggaatggtgcagaggaagagct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4378 VARLMGL

Protein Analysis

147

Amino Acids

16.32

Weight (kDa)

10.22

Isoelectric Point (pI)

57.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008556)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G63430 AT3G63430
fragaria_vesca	FvH4_2g22810 FvH4_2g22810 FvH4_2g22810
malus_domestica	MD03G1256300.v1.1 MD11G1277100.v1.1
prunus_persica	Prupe.8G233400_v2.0.a1
pyrus_communis	pycom03g20300 pycom03g20310 pycom11g24510
rosa_chinensis	RchiOBHm_Chr6g0289731
rosa_laevigata	RLG00000012272
rosa_multiflora	Rmu_co8011000.1_g000001 Rmu_sc0005640.1_g000024
rosa_roxburghii	Rroxscaffold_7G00177610 Rroxscaffold_7G00178110
rosa_rugosa	Rorug06G0206100
rosa_samantha	Rh6AG318000 Rh6BG325300 Rh6CG330900 Rh6DG316600
rosa_wichuraiana	Rw6G027400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	150
AccIII	TCCGGA	1 cut(s)	222
AciI	CCGC	4 cut(s)	148, 194, 308, 339
AclWI	GGATC	5 cut(s)	61, 197, 210, 366, 380
AcsI	RAATTY	1 cut(s)	319
AfaI	GTAC	3 cut(s)	56, 73, 263
AgsI	TTSAA	1 cut(s)	325
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	4 cut(s)	220, 366, 410, 441
AluI	AGCT	4 cut(s)	220, 366, 410, 441
Alw26I	GTCTC	1 cut(s)	129
AlwI	GGATC	5 cut(s)	61, 197, 210, 366, 380
Aor13HI	TCCGGA	1 cut(s)	222
ApeKI	GCWGC	4 cut(s)	80, 310, 313, 366
ApoI	RAATTY	1 cut(s)	319
AspS9I	GGNCC	1 cut(s)	273
AsuHPI	GGTGA	1 cut(s)	137
AvaII	GGWCC	1 cut(s)	273
BamHI	GGATCC	1 cut(s)	202
BbvI	GCAGC	4 cut(s)	67, 322, 325, 353
BciT130I	CCWGG	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	129
BfaI	CTAG	2 cut(s)	156, 375
BglII	AGATCT	2 cut(s)	227, 256
BisI	GCNGC	6 cut(s)	81, 194, 311, 314, 340, 367
BlsI	GCNGC	6 cut(s)	82, 195, 312, 315, 341, 368
Bme1390I	CCNGG	1 cut(s)	169
Bme18I	GGWCC	1 cut(s)	273
BmgT120I	GGNCC	1 cut(s)	273
BmiI	GGNNCC	1 cut(s)	204
BmrFI	CCNGG	1 cut(s)	169
BsaJI	CCNNGG	4 cut(s)	5, 33, 269, 276
BsaWI	WCCGGW	1 cut(s)	222
Bse3DI	GCAATG	2 cut(s)	162, 349
BseAI	TCCGGA	1 cut(s)	222
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	4 cut(s)	5, 33, 269, 276
BseMI	GCAATG	2 cut(s)	162, 349
BseXI	GCAGC	4 cut(s)	67, 322, 325, 353
BsiSI	CCGG	2 cut(s)	114, 223
BslFI	GGGAC	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	129
BsmFI	GGGAC	1 cut(s)	192
Bsp13I	TCCGGA	1 cut(s)	222
Bsp143I	GATC	7 cut(s)	66, 202, 213, 227, 256, 358, 385
BspACI	CCGC	4 cut(s)	148, 194, 308, 339
BspEI	TCCGGA	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	204
BspPI	GGATC	5 cut(s)	61, 197, 210, 366, 380
BspQI	GCTCTTC	2 cut(s)	320, 431
BsrBI	CCGCTC	1 cut(s)	150
BsrDI	GCAATG	2 cut(s)	162, 349
BssECI	CCNNGG	4 cut(s)	5, 33, 269, 276
BssMI	GATC	7 cut(s)	66, 202, 213, 227, 256, 358, 385
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	3 cut(s)	34, 189, 273
Bst6I	CTCTTC	2 cut(s)	320, 431
BstAPI	GCANNNNNTGC	1 cut(s)	336
BstC8I	GCNNGC	1 cut(s)	152
BstDSI	CCRYGG	3 cut(s)	33, 269, 276
BstKTI	GATC	7 cut(s)	69, 205, 216, 230, 259, 361, 388
BstMAI	GTCTC	1 cut(s)	129
BstMBI	GATC	7 cut(s)	66, 202, 213, 227, 256, 358, 385
BstMWI	GCNNNNNNNGC	4 cut(s)	156, 310, 336, 348
BstNI	CCWGG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	167
BstV1I	GCAGC	4 cut(s)	67, 322, 325, 353
BstX2I	RGATCY	5 cut(s)	66, 202, 227, 256, 385
BstXI	CCANNNNNNTGG	1 cut(s)	175
BstYI	RGATCY	5 cut(s)	66, 202, 227, 256, 385
BtgI	CCRYGG	3 cut(s)	33, 269, 276
Cac8I	GCNNGC	1 cut(s)	152
Cfr13I	GGNCC	1 cut(s)	273
CpoI	CGGWCCG	1 cut(s)	273
CseI	GACGC	3 cut(s)	47, 148, 222
Csp6I	GTAC	3 cut(s)	55, 72, 262
CspI	CGGWCCG	1 cut(s)	273
CviQI	GTAC	3 cut(s)	55, 72, 262
DpnI	GATC	7 cut(s)	68, 204, 215, 229, 258, 360, 387
DpnII	GATC	7 cut(s)	66, 202, 213, 227, 256, 358, 385
Eam1104I	CTCTTC	2 cut(s)	320, 431
EarI	CTCTTC	2 cut(s)	320, 431
Eco47I	GGWCC	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	167
FaqI	GGGAC	1 cut(s)	192
Fnu4HI	GCNGC	6 cut(s)	81, 194, 311, 314, 340, 367
Fsp4HI	GCNGC	6 cut(s)	81, 194, 311, 314, 340, 367
FspBI	CTAG	2 cut(s)	156, 375
GluI	GCNGC	6 cut(s)	81, 194, 311, 314, 340, 367
HapII	CCGG	2 cut(s)	114, 223
HgaI	GACGC	3 cut(s)	47, 148, 222
HinfI	GANTC	3 cut(s)	142, 180, 239
HpaII	CCGG	2 cut(s)	114, 223
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	4 cut(s)	37, 109, 250, 280
Hpy188I	TCNGA	4 cut(s)	202, 238, 363, 390
Hpy188III	TCNNGA	3 cut(s)	206, 223, 243
Hpy8I	GTNNAC	4 cut(s)	37, 109, 250, 280
Hpy99I	CGWCG	1 cut(s)	122
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	3 cut(s)	34, 189, 273
HpyCH4V	TGCA	2 cut(s)	369, 430
HpyF10VI	GCNNNNNNNGC	4 cut(s)	156, 310, 336, 348
Kpn2I	TCCGGA	1 cut(s)	222
Kzo9I	GATC	7 cut(s)	66, 202, 213, 227, 256, 358, 385
LguI	GCTCTTC	2 cut(s)	320, 431
LmnI	GCTCC	3 cut(s)	122, 225, 363
Lsp1109I	GCAGC	4 cut(s)	67, 322, 325, 353
MaeI	CTAG	2 cut(s)	156, 375
MalI	GATC	7 cut(s)	68, 204, 215, 229, 258, 360, 387
MbiI	CCGCTC	1 cut(s)	150
MboI	GATC	7 cut(s)	66, 202, 213, 227, 256, 358, 385
MboII	GAAGA	1 cut(s)	337
MfeI	CAATTG	1 cut(s)	126
MflI	RGATCY	5 cut(s)	66, 202, 227, 256, 385
MluCI	AATT	3 cut(s)	126, 289, 319
MlyI	GAGTC	2 cut(s)	174, 248
MnlI	CCTC	2 cut(s)	349, 426
MroI	TCCGGA	1 cut(s)	222
MspI	CCGG	2 cut(s)	114, 223
MspR9I	CCNGG	1 cut(s)	169
MunI	CAATTG	1 cut(s)	126
MvaI	CCWGG	1 cut(s)	169
MwoI	GCNNNNNNNGC	4 cut(s)	156, 310, 336, 348
NdeII	GATC	7 cut(s)	66, 202, 213, 227, 256, 358, 385
NlaIV	GGNNCC	1 cut(s)	204
NmeAIII	GCCGAG	1 cut(s)	30
PciSI	GCTCTTC	2 cut(s)	320, 431
PfeI	GAWTC	1 cut(s)	142
PkrI	GCNGC	6 cut(s)	82, 195, 312, 315, 341, 368
PleI	GAGTC	2 cut(s)	174, 247
PpsI	GAGTC	2 cut(s)	174, 247
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PspN4I	GGNNCC	1 cut(s)	204
PspPI	GGNCC	1 cut(s)	273
PsuI	RGATCY	5 cut(s)	66, 202, 227, 256, 385
RsaI	GTAC	3 cut(s)	56, 73, 263
RsaNI	GTAC	3 cut(s)	55, 72, 262
Rsr2I	CGGWCCG	1 cut(s)	273
RsrII	CGGWCCG	1 cut(s)	273
SapI	GCTCTTC	2 cut(s)	320, 431
SatI	GCNGC	6 cut(s)	81, 194, 311, 314, 340, 367
Sau3AI	GATC	7 cut(s)	66, 202, 213, 227, 256, 358, 385
Sau96I	GGNCC	1 cut(s)	273
SchI	GAGTC	2 cut(s)	174, 248
ScrFI	CCNGG	1 cut(s)	169
SetI	ASST	4 cut(s)	222, 368, 384, 412
SinI	GGWCC	1 cut(s)	273
Sse9I	AATT	3 cut(s)	126, 289, 319
SsiI	CCGC	4 cut(s)	148, 194, 308, 339
SspMI	CTAG	2 cut(s)	156, 375
StyD4I	CCNGG	1 cut(s)	167
TaaI	ACNGT	3 cut(s)	34, 189, 273
TaqI	TCGA	2 cut(s)	18, 183
TasI	AATT	3 cut(s)	126, 289, 319
TauI	GCSGC	2 cut(s)	196, 342
TfiI	GAWTC	1 cut(s)	142
TseI	GCWGC	4 cut(s)	80, 310, 313, 366
TspGWI	ACGGA	4 cut(s)	59, 135, 147, 265
VpaK11BI	GGWCC	1 cut(s)	273
XapI	RAATTY	1 cut(s)	319
XspI	CTAG	2 cut(s)	156, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.