pycom01g02120

DNA methyltransferase 1-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0006176
Physical Location & Seq
Forward (+)
1788252 .. 1789976
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g02120.5

Sequence Viewer

Length: 540 bp
ATGGATGCCAAGGACATCTTGGGCTTGTCCAAAACCTCGCATCCCGCATCCCAGGAGAAGAAATCTCGAACAGTTAAGGAGTCTCAGCGAAAACCAGATGGCATTTCGCGCGAGGTGTATGCGCTTATCGGGGGTGTTCCACCTCTCATGCCGGCAGTGGAGCCATTACAGCTGAAAAAACGGCCTCCGACTGACGAAAAGATCACTTGGCAGTGGCTTCCTTTTACAAGTTCTGCTCGGAAAGATAATTTACAGCTCTTTCACTGGGTTAGAGTTGTAAATGGTGTCCCACCTATGGGTGACTACTCCTTTGCCAAGTATAACAAGTCTGTGGACGTTGTCAAATACACAGACGAGGAGTATGAGAAGCATTTGACTGATGATATGTGGACAAAGGAAGAGACGGATCAATTGTTTGAATTGTGTCAACAGTTTGATCTACGCTTCATTGTGATAGCAGACAGGTTCCCGTCTTCTCGTACTGTGGAAGAACTGAAGGAACGCTATTACAAAGCTCGATCGATCTATATTAATTGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0000981 GO:0001085 GO:0001103 GO:0003674 GO:0003700 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0034641 GO:0035267 GO:0036211 GO:0042306 GO:0042307 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0046822 GO:0046824 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051171 GO:0051172 GO:0051222 GO:0051223 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0090316 GO:0097346 GO:0140110 GO:1900180 GO:1900182 GO:1901360 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904949 GO:1904951 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DMAP1 SANT_DAMP1_like

Protein Analysis

180

Amino Acids

20.92

Weight (kDa)

7.71

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 109, 111
AciI CCGC 1 cut(s) 45
AclWI GGATC 1 cut(s) 414
AcuI CTGAAG 1 cut(s) 515
AfaI GTAC 1 cut(s) 481
AfiI CCNNNNNNNGG 2 cut(s) 295, 296
AgsI TTSAA 1 cut(s) 419
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 3 cut(s) 172, 256, 515
AluI AGCT 3 cut(s) 172, 256, 515
Alw26I GTCTC 2 cut(s) 87, 395
AlwI GGATC 1 cut(s) 414
AoxI GGCC 1 cut(s) 182
ArsI GACNNNNNNTTYG 2 cut(s) 293, 325
AseI ATTAAT 1 cut(s) 531
AspLEI GCGC 2 cut(s) 111, 124
AsuHPI GGTGA 1 cut(s) 311
BbsI GAAGAC 1 cut(s) 465
BccI CCATC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 197
BcgI CGANNNNNNTGC 2 cut(s) 101, 135
BciT130I CCWGG 1 cut(s) 53
BcoDI GTCTC 2 cut(s) 87, 395
BfaI CTAG 1 cut(s) 538
Bme1390I CCNGG 1 cut(s) 53
BmiI GGNNCC 2 cut(s) 162, 467
BmrFI CCNGG 1 cut(s) 53
BmrI ACTGGG 1 cut(s) 274
BmsI GCATC 2 cut(s) 49, 56
BmuI ACTGGG 1 cut(s) 274
BpiI GAAGAC 1 cut(s) 465
Bsa29I ATCGAT 1 cut(s) 521
BsaJI CCNNGG 2 cut(s) 9, 51
Bsc4I CCNNNNNNNGG 2 cut(s) 295, 296
Bse118I RCCGGY 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 269
BseBI CCWGG 1 cut(s) 53
BseCI ATCGAT 1 cut(s) 521
BseDI CCNNGG 2 cut(s) 9, 51
BseGI GGATG 3 cut(s) 10, 40, 47
BseLI CCNNNNNNNGG 2 cut(s) 295, 296
BseMII CTCAG 1 cut(s) 98
BseNI ACTGG 1 cut(s) 269
BseRI GAGGAG 1 cut(s) 371
Bsh1236I CGCG 2 cut(s) 109, 111
Bsh1285I CGRYCG 1 cut(s) 521
BshFI GGCC 1 cut(s) 184
BshVI ATCGAT 1 cut(s) 521
BsiEI CGRYCG 1 cut(s) 521
BsiSI CCGG 1 cut(s) 152
BslFI GGGAC 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 295, 296
BsmAI GTCTC 2 cut(s) 87, 395
BsmBI CGTCTC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 272
BsnI GGCC 1 cut(s) 184
Bsp143I GATC 5 cut(s) 201, 406, 436, 518, 522
BspACI CCGC 1 cut(s) 45
BspANI GGCC 1 cut(s) 184
BspCNI CTCAG 1 cut(s) 97
BspDI ATCGAT 1 cut(s) 521
BspFNI CGCG 2 cut(s) 109, 111
BspLI GGNNCC 2 cut(s) 162, 467
BspPI GGATC 1 cut(s) 414
BsrFI RCCGGY 1 cut(s) 151
BsrI ACTGG 1 cut(s) 269
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 9, 51
BssMI GATC 5 cut(s) 201, 406, 436, 518, 522
BssT1I CCWWGG 1 cut(s) 9
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 3 cut(s) 73, 432, 484
Bst6I CTCTTC 1 cut(s) 393
BstC8I GCNNGC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 84
BstF5I GGATG 3 cut(s) 10, 40, 47
BstFNI CGCG 2 cut(s) 109, 111
BstHHI GCGC 2 cut(s) 111, 124
BstKTI GATC 5 cut(s) 204, 409, 439, 521, 525
BstMAI GTCTC 2 cut(s) 87, 395
BstMBI GATC 5 cut(s) 201, 406, 436, 518, 522
BstMCI CGRYCG 1 cut(s) 521
BstMWI GCNNNNNNNGC 2 cut(s) 108, 169
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstUI CGCG 2 cut(s) 109, 111
BstV2I GAAGAC 1 cut(s) 465
Bsu15I ATCGAT 1 cut(s) 521
BsuRI GGCC 1 cut(s) 184
BsuTUI ATCGAT 1 cut(s) 521
BtsCI GGATG 3 cut(s) 10, 40, 47
BtsI GCAGTG 2 cut(s) 162, 218
BtsIMutI CAGTG 3 cut(s) 162, 218, 262
Cac8I GCNNGC 1 cut(s) 153
CfoI GCGC 2 cut(s) 111, 124
Cfr10I RCCGGY 1 cut(s) 151
ClaI ATCGAT 1 cut(s) 521
Csp6I GTAC 1 cut(s) 480
CviAII CATG 1 cut(s) 148
CviJI RGCY 7 cut(s) 24, 163, 172, 184, 217, 256, 515
CviKI_1 RGCY 7 cut(s) 24, 163, 172, 184, 217, 256, 515
CviQI GTAC 1 cut(s) 480
DdeI CTNAG 1 cut(s) 84
DpnI GATC 5 cut(s) 203, 408, 438, 520, 524
DpnII GATC 5 cut(s) 201, 406, 436, 518, 522
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Eco130I CCWWGG 1 cut(s) 9
Eco57I CTGAAG 1 cut(s) 515
EcoRII CCWGG 1 cut(s) 51
EcoT14I CCWWGG 1 cut(s) 9
ErhI CCWWGG 1 cut(s) 9
Esp3I CGTCTC 1 cut(s) 395
FaeI CATG 1 cut(s) 151
FaiI YATR 7 cut(s) 120, 149, 296, 321, 363, 386, 528
FalI AAGNNNNNCTT 1 cut(s) 34
FaqI GGGAC 1 cut(s) 272
FatI CATG 1 cut(s) 147
FauI CCCGC 1 cut(s) 52
FokI GGATG 3 cut(s) 17, 27, 34
FspBI CTAG 1 cut(s) 538
GlaI GCGC 2 cut(s) 110, 123
HaeIII GGCC 1 cut(s) 184
HapII CCGG 1 cut(s) 152
HhaI GCGC 2 cut(s) 111, 124
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 2 cut(s) 109, 122
HinP1I GCGC 2 cut(s) 109, 122
HincII GTYRAC 1 cut(s) 428
HindII GTYRAC 1 cut(s) 428
HinfI GANTC 1 cut(s) 80
HpaII CCGG 1 cut(s) 152
HphI GGTGA 1 cut(s) 311
Hpy166II GTNNAC 3 cut(s) 334, 390, 428
Hpy188I TCNGA 2 cut(s) 189, 240
Hpy188III TCNNGA 1 cut(s) 66
Hpy8I GTNNAC 3 cut(s) 334, 390, 428
HpyAV CCTTC 1 cut(s) 490
HpyCH4III ACNGT 3 cut(s) 73, 432, 484
HpyCH4IV ACGT 1 cut(s) 336
HpyF10VI GCNNNNNNNGC 2 cut(s) 108, 169
HpyF3I CTNAG 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 336
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 2 cut(s) 109, 122
KroI GCCGGC 1 cut(s) 151
KroNI GCCGGC 1 cut(s) 153
Kzo9I GATC 5 cut(s) 201, 406, 436, 518, 522
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 6 cut(s) 38, 65, 108, 165, 250, 448
LweI GCATC 2 cut(s) 49, 56
MaeI CTAG 1 cut(s) 538
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 1 cut(s) 299
MalI GATC 5 cut(s) 203, 408, 438, 520, 524
MboI GATC 5 cut(s) 201, 406, 436, 518, 522
MboII GAAGA 4 cut(s) 70, 410, 465, 500
MfeI CAATTG 1 cut(s) 410
MluCI AATT 4 cut(s) 247, 410, 419, 532
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 212
MnlI CCTC 5 cut(s) 46, 106, 153, 195, 349
MroNI GCCGGC 1 cut(s) 151
MseI TTAA 2 cut(s) 75, 531
MspA1I CMGCKG 1 cut(s) 172
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 53
MunI CAATTG 1 cut(s) 410
MvaI CCWGG 1 cut(s) 53
MvnI CGCG 2 cut(s) 109, 111
MwoI GCNNNNNNNGC 2 cut(s) 108, 169
NaeI GCCGGC 1 cut(s) 153
NdeII GATC 5 cut(s) 201, 406, 436, 518, 522
NgoMIV GCCGGC 1 cut(s) 151
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 2 cut(s) 162, 467
NmuCI GTSAC 1 cut(s) 299
PdiI GCCGGC 1 cut(s) 153
PflFI GACNNNGTC 1 cut(s) 338
Ple19I CGATCG 1 cut(s) 521
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PshBI ATTAAT 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 51
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 2 cut(s) 162, 467
PsyI GACNNNGTC 1 cut(s) 338
PvuI CGATCG 1 cut(s) 521
PvuII CAGCTG 1 cut(s) 172
RsaI GTAC 1 cut(s) 481
RsaNI GTAC 1 cut(s) 480
SaqAI TTAA 2 cut(s) 75, 531
Sau3AI GATC 5 cut(s) 201, 406, 436, 518, 522
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 53
SetI ASST 9 cut(s) 38, 117, 145, 174, 258, 295, 339, 467, 517
SfaNI GCATC 2 cut(s) 49, 56
Sse9I AATT 4 cut(s) 247, 410, 419, 532
SsiI CCGC 1 cut(s) 45
SspMI CTAG 1 cut(s) 538
StyD4I CCNGG 1 cut(s) 51
StyI CCWWGG 1 cut(s) 9
TaaI ACNGT 3 cut(s) 73, 432, 484
TaiI ACGT 1 cut(s) 339
TaqI TCGA 3 cut(s) 67, 517, 521
TasI AATT 4 cut(s) 247, 410, 419, 532
Tru1I TTAA 2 cut(s) 75, 531
Tru9I TTAA 2 cut(s) 75, 531
TscAI CASTG 3 cut(s) 162, 218, 269
TseFI GTSAC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 436
TspGWI ACGGA 1 cut(s) 419
TspRI CASTG 3 cut(s) 162, 218, 269
Tth111I GACNNNGTC 1 cut(s) 338
VspI ATTAAT 1 cut(s) 531
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XspI CTAG 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.