Rorug03G0229000

DNA methyltransferase 1-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006176
Physical Location & Seq
Forward (+)
20995799 .. 20997960
2162 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0229000.1

Sequence Viewer

Length: 465 bp
ATGCAGATTTTCGTGAAAACTCTAACTGGGAAGACCATCACTCTCGAGGTTGAGAGCAGCGACACCATCGATAATGTCAAAGCCAAGATCCAGGATAAGGAAGGCATCCCTCCTGATCAACAGAGATTGATTTTTGCCGGTAAGCAATTGGAAGATGGTAGAACTCTTGCAGATTATAACATCCAAAAGGAGTCAACTCTTCACCTGGTTTTGAGGTTGAGGGGAGGAACTATGATTAAGGTGAAGACTCTTACCGGGAAAGAAATTGAGATTGATATTGAACCGACTGACACCATTGACCGAATTAAGGAAAGGGTTGAGGAGAAAGAGGGAATTCCTCCGGTGCAACAAAGGCTGATTTATGCTGGCAAGCAGCTTGGAGATGACAAAACTGCTAAAGACTATAACATTGAGGGTGGCTCTGTCCTTCATCTAGTGCTTGCACTCCGTGGTGGTAGTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0000981 GO:0001085 GO:0001103 GO:0003674 GO:0003700 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0034641 GO:0035267 GO:0036211 GO:0042306 GO:0042307 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0046822 GO:0046824 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051171 GO:0051172 GO:0051222 GO:0051223 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0090316 GO:0097346 GO:0140110 GO:1900180 GO:1900182 GO:1901360 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904949 GO:1904951 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DMAP1 SANT_DAMP1_like

Protein Analysis

154

Amino Acids

17.15

Weight (kDa)

5.77

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 1 - 71 1.4e-17 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 3 - 74 1.8e-32 Ubiquitin family
ubiquitin PF00240 79 - 149 5.8e-28 Ubiquitin family
Rad60-SLD PF11976 79 - 147 4.7e-16 Ubiquitin-2 like Rad60 SUMO-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 177
AclWI GGATC 1 cut(s) 82
AcsI RAATTY 1 cut(s) 333
AdeI CACNNNGTG 1 cut(s) 449
AfiI CCNNNNNNNGG 2 cut(s) 97, 307
AgsI TTSAA 1 cut(s) 281
AjnI CCWGG 2 cut(s) 90, 204
AluBI AGCT 1 cut(s) 376
AluI AGCT 1 cut(s) 376
AlwI GGATC 1 cut(s) 82
Ama87I CYCGRG 1 cut(s) 44
ApeKI GCWGC 2 cut(s) 57, 373
ApoI RAATTY 1 cut(s) 333
AsuC2I CCSGG 1 cut(s) 256
AsuHPI GGTGA 2 cut(s) 194, 253
AvaI CYCGRG 1 cut(s) 44
BbsI GAAGAC 2 cut(s) 38, 251
BbvI GCAGC 2 cut(s) 69, 385
BccI CCATC 3 cut(s) 44, 74, 149
BciT130I CCWGG 2 cut(s) 92, 206
BclI TGATCA 1 cut(s) 115
BcnI CCSGG 1 cut(s) 256
BfaI CTAG 1 cut(s) 434
BisI GCNGC 2 cut(s) 58, 374
BlsI GCNGC 2 cut(s) 59, 375
Bme1390I CCNGG 3 cut(s) 92, 206, 256
BmeT110I CYCGRG 1 cut(s) 44
BmrFI CCNGG 3 cut(s) 92, 206, 256
BmrI ACTGGG 1 cut(s) 36
BmsI GCATC 1 cut(s) 114
BmuI ACTGGG 1 cut(s) 36
BpiI GAAGAC 2 cut(s) 38, 251
BplI GAGNNNNNCTC 2 cut(s) 404, 436
BpuMI CCSGG 1 cut(s) 256
Bsa29I ATCGAT 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 448
BsaWI WCCGGW 1 cut(s) 340
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 307
Bse118I RCCGGY 1 cut(s) 137
Bse1I ACTGG 1 cut(s) 31
BseBI CCWGG 2 cut(s) 92, 206
BseCI ATCGAT 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 448
BseGI GGATG 2 cut(s) 105, 180
BseLI CCNNNNNNNGG 2 cut(s) 97, 307
BseNI ACTGG 1 cut(s) 31
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 2 cut(s) 69, 385
BshVI ATCGAT 1 cut(s) 69
BsiHKCI CYCGRG 1 cut(s) 44
BsiSI CCGG 3 cut(s) 138, 255, 341
BslI CCNNNNNNNGG 2 cut(s) 97, 307
BsoBI CYCGRG 1 cut(s) 44
Bsp143I GATC 2 cut(s) 87, 115
BspDI ATCGAT 1 cut(s) 69
BspPI GGATC 1 cut(s) 82
BsrFI RCCGGY 1 cut(s) 137
BsrI ACTGG 1 cut(s) 31
BssAI RCCGGY 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 448
BssMI GATC 2 cut(s) 87, 115
Bst2UI CCWGG 2 cut(s) 92, 206
Bst6I CTCTTC 1 cut(s) 204
BstC8I GCNNGC 3 cut(s) 367, 371, 441
BstDSI CCRYGG 1 cut(s) 448
BstF5I GGATG 2 cut(s) 105, 180
BstKTI GATC 2 cut(s) 90, 118
BstMBI GATC 2 cut(s) 87, 115
BstMWI GCNNNNNNNGC 1 cut(s) 352
BstNI CCWGG 2 cut(s) 92, 206
BstSCI CCNGG 3 cut(s) 90, 204, 254
BstV1I GCAGC 2 cut(s) 69, 385
BstV2I GAAGAC 2 cut(s) 38, 251
BstX2I RGATCY 1 cut(s) 87
BstYI RGATCY 1 cut(s) 87
Bsu15I ATCGAT 1 cut(s) 69
BsuTUI ATCGAT 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 448
BtsCI GGATG 2 cut(s) 105, 180
Cac8I GCNNGC 3 cut(s) 367, 371, 441
Cfr10I RCCGGY 1 cut(s) 137
ClaI ATCGAT 1 cut(s) 69
CsiI ACCWGGT 1 cut(s) 204
CviJI RGCY 4 cut(s) 83, 355, 376, 420
CviKI_1 RGCY 4 cut(s) 83, 355, 376, 420
DpnI GATC 2 cut(s) 89, 117
DpnII GATC 2 cut(s) 87, 115
DraIII CACNNNGTG 1 cut(s) 449
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
Eco88I CYCGRG 1 cut(s) 44
EcoRI GAATTC 1 cut(s) 333
EcoRII CCWGG 2 cut(s) 90, 204
FaiI YATR 5 cut(s) 177, 233, 363, 405, 463
FbaI TGATCA 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 58, 374
FokI GGATG 2 cut(s) 92, 167
Fsp4HI GCNGC 2 cut(s) 58, 374
FspBI CTAG 1 cut(s) 434
GluI GCNGC 2 cut(s) 58, 374
HapII CCGG 3 cut(s) 138, 255, 341
HincII GTYRAC 1 cut(s) 195
HindII GTYRAC 1 cut(s) 195
HinfI GANTC 2 cut(s) 191, 247
HpaII CCGG 3 cut(s) 138, 255, 341
HphI GGTGA 2 cut(s) 194, 253
Hpy166II GTNNAC 1 cut(s) 195
Hpy188III TCNNGA 3 cut(s) 13, 44, 113
Hpy8I GTNNAC 1 cut(s) 195
HpyAV CCTTC 2 cut(s) 95, 437
HpyCH4V TGCA 4 cut(s) 4, 170, 346, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 352
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 2 cut(s) 87, 115
Lsp1109I GCAGC 2 cut(s) 69, 385
LweI GCATC 1 cut(s) 114
MabI ACCWGGT 1 cut(s) 204
MaeI CTAG 1 cut(s) 434
MalI GATC 2 cut(s) 89, 117
MboI GATC 2 cut(s) 87, 115
MboII GAAGA 4 cut(s) 43, 164, 191, 256
MfeI CAATTG 1 cut(s) 146
MflI RGATCY 1 cut(s) 87
MluCI AATT 4 cut(s) 146, 264, 303, 333
MlyI GAGTC 2 cut(s) 200, 241
MnlI CCTC 9 cut(s) 40, 120, 207, 213, 218, 313, 322, 348, 406
MseI TTAA 2 cut(s) 237, 306
MspI CCGG 3 cut(s) 138, 255, 341
MspR9I CCNGG 3 cut(s) 92, 206, 256
MunI CAATTG 1 cut(s) 146
MvaI CCWGG 2 cut(s) 92, 206
MwoI GCNNNNNNNGC 1 cut(s) 352
NciI CCSGG 1 cut(s) 256
NdeII GATC 2 cut(s) 87, 115
PaeR7I CTCGAG 1 cut(s) 44
PfoI TCCNGGA 1 cut(s) 90
PkrI GCNGC 2 cut(s) 59, 375
PleI GAGTC 2 cut(s) 199, 241
PpsI GAGTC 2 cut(s) 199, 241
PsiI TTATAA 1 cut(s) 177
Psp6I CCWGG 2 cut(s) 90, 204
PspGI CCWGG 2 cut(s) 90, 204
PsuI RGATCY 1 cut(s) 87
SaqAI TTAA 2 cut(s) 237, 306
SatI GCNGC 2 cut(s) 58, 374
Sau3AI GATC 2 cut(s) 87, 115
SchI GAGTC 2 cut(s) 200, 241
ScrFI CCNGG 3 cut(s) 92, 206, 256
SetI ASST 5 cut(s) 51, 207, 218, 243, 378
SexAI ACCWGGT 1 cut(s) 204
SfaNI GCATC 1 cut(s) 114
Sfr274I CTCGAG 1 cut(s) 44
SlaI CTCGAG 1 cut(s) 44
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 4 cut(s) 146, 264, 303, 333
SspMI CTAG 1 cut(s) 434
StyD4I CCNGG 3 cut(s) 90, 204, 254
TaqI TCGA 2 cut(s) 45, 69
TaqII GACCGA 1 cut(s) 315
TasI AATT 4 cut(s) 146, 264, 303, 333
Tru1I TTAA 2 cut(s) 237, 306
Tru9I TTAA 2 cut(s) 237, 306
TseI GCWGC 2 cut(s) 57, 373
TspDTI ATGAA 1 cut(s) 419
TspGWI ACGGA 1 cut(s) 437
XapI RAATTY 1 cut(s) 333
XhoI CTCGAG 1 cut(s) 44
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.