Rmu_sc0009825.1_g000003

DNA methyltransferase 1-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009825.1
OG0006176
Physical Location & Seq
Forward (+)
15120 .. 19078
3959 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009825.1_g000003.1.cds

Sequence Viewer

Length: 1152 bp
atgcctgcaattgagccctcgcagctcaaaaaacgccctccatccgatgagaagatcacttggcagtggcttccttttacgaattctgctcggaaagatgacttgcagctttaccattgggttagagttgtcaatggtgccccacctactggtgactactcctttgccaagtataacaagtctgtcgatattatcaaatacactgacgaggagtatgataagtatttgactgatcctatgtggacaaaagaggagaccgatcagttgtttgacttgtgtcaacagtttgatctccgcttcattgtgatagcagacaggttcccatcatctcgtactgtggaggaattaaaggatcgatattacagtgtctctcgacatatattaattgctagagcagcatcgcccgcagatgtatcagggcaccctcttgttaaggaaccatacaaagttacacaagagaaagaacgcaagagagcactgtccatggtcctttctcaaacaaaaaatcaagagagaaaagatgcggaggttcttgctgaagccaagagaatagccgagtcacgtgcacgcatggttgcaaggagtgctagagagttggagttgccagtcacattcaatgatgagaggggtattgttcctggtgaaagtatatcaccattatccagcactgttgcaccttcaacttcgatggataatacttccactctaggcactcttcgcttgcttcgagtatatcttcgaacgtacgcacttgaccagatgatcatagctgcaagctcttctgctggacttcggactatcaagcgtgttgagcaaagtttacaagaacttggggttaatttaaaaccaagagttccaactaaagctgtttgttcggagcatcttgaattaagaaaagaaatactgactctattgaatcttcagaaagagttgcaatataaggaggcagatggttcatcttatcgtgacagtacttacgaaacaccaggcacacctaaggatcgcacgtttgttcccgactcaatgatgtttggaggtgaaagagttgttaaacgagatcagaagcgcaagggacctggtagggtatcagaagctccttcatcacctgcgcagtctaaaaggccaagaaagttaaaggcaacagatctgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0000981 GO:0001085 GO:0001103 GO:0003674 GO:0003700 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0034641 GO:0035267 GO:0036211 GO:0042306 GO:0042307 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0046822 GO:0046824 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051171 GO:0051172 GO:0051222 GO:0051223 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0090316 GO:0097346 GO:0140110 GO:1900180 GO:1900182 GO:1901360 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904949 GO:1904951 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DMAP1 SANT_DAMP1_like

Protein Analysis

383

Amino Acids

43.62

Weight (kDa)

9.32

Isoelectric Point (pI)

52.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1114
Acc16I TGCGCA 1 cut(s) 1110
Acc36I ACCTGC 1 cut(s) 1114
AccB1I GGYRCC 2 cut(s) 137, 420
AccB7I CCANNNNNTGG 1 cut(s) 149
AciI CCGC 3 cut(s) 295, 405, 524
AclWI GGATC 3 cut(s) 227, 360, 1008
AcsI RAATTY 1 cut(s) 82
AcuI CTGAAG 2 cut(s) 558, 905
AcvI CACGTG 1 cut(s) 563
AfaI GTAC 3 cut(s) 334, 746, 973
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 4 cut(s) 616, 681, 887, 916
AjnI CCWGG 3 cut(s) 637, 985, 1075
AluBI AGCT 6 cut(s) 25, 109, 770, 777, 866, 1094
AluI AGCT 6 cut(s) 25, 109, 770, 777, 866, 1094
Alw21I GWGCWC 2 cut(s) 478, 568
Alw26I GTCTC 2 cut(s) 248, 373
Alw44I GTGCAC 1 cut(s) 564
AlwI GGATC 3 cut(s) 227, 360, 1008
AoxI GGCC 1 cut(s) 1121
ApaLI GTGCAC 1 cut(s) 564
ApeKI GCWGC 4 cut(s) 22, 106, 395, 770
ApoI RAATTY 1 cut(s) 82
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AseI ATTAAT 1 cut(s) 383
AspLEI GCGC 2 cut(s) 1068, 1111
AspS9I GGNCC 2 cut(s) 487, 1073
AsuHPI GGTGA 5 cut(s) 164, 645, 653, 1049, 1095
AsuII TTCGAA 1 cut(s) 739
AvaII GGWCC 2 cut(s) 487, 1073
AxyI CCTNAGG 1 cut(s) 996
BaeGI GKGCMC 3 cut(s) 142, 423, 568
BanI GGYRCC 2 cut(s) 137, 420
BanII GRGCYC 1 cut(s) 18
BbrPI CACGTG 1 cut(s) 563
Bbv12I GWGCWC 2 cut(s) 478, 568
BbvI GCAGC 4 cut(s) 34, 118, 407, 757
BccI CCATC 4 cut(s) 49, 331, 682, 944
BcgI CGANNNNNNTGC 2 cut(s) 545, 579
BciT130I CCWGG 3 cut(s) 639, 987, 1077
BclI TGATCA 1 cut(s) 762
BcoDI GTCTC 2 cut(s) 248, 373
BfaI CTAG 3 cut(s) 390, 588, 707
BfmI CTRYAG 1 cut(s) 1148
BfuAI ACCTGC 1 cut(s) 1114
BglII AGATCT 1 cut(s) 1144
BisI GCNGC 4 cut(s) 23, 107, 396, 771
BlsI GCNGC 4 cut(s) 24, 108, 397, 772
BmcAI AGTACT 1 cut(s) 973
Bme1390I CCNGG 3 cut(s) 639, 987, 1077
Bme18I GGWCC 2 cut(s) 487, 1073
BmgT120I GGNCC 2 cut(s) 487, 1073
BmiI GGNNCC 5 cut(s) 139, 320, 422, 438, 1074
BmrFI CCNGG 3 cut(s) 639, 987, 1077
BmsI GCATC 3 cut(s) 407, 511, 889
BoxI GACNNNNGTC 1 cut(s) 276
Bpu14I TTCGAA 1 cut(s) 739
Bsa29I ATCGAT 1 cut(s) 355
BsaAI YACGTR 1 cut(s) 563
BsaI GGTCTC 1 cut(s) 248
BsaJI CCNNGG 1 cut(s) 483
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse1I ACTGG 2 cut(s) 154, 605
Bse21I CCTNAGG 1 cut(s) 996
BseBI CCWGG 3 cut(s) 639, 987, 1077
BseCI ATCGAT 1 cut(s) 355
BseDI CCNNGG 1 cut(s) 483
BseGI GGATG 1 cut(s) 41
BseLI CCNNNNNNNGG 1 cut(s) 149
BseNI ACTGG 2 cut(s) 154, 605
BseRI GAGGAG 2 cut(s) 224, 266
BseSI GKGCMC 3 cut(s) 142, 423, 568
BseXI GCAGC 4 cut(s) 34, 118, 407, 757
BshFI GGCC 1 cut(s) 1123
BshNI GGYRCC 2 cut(s) 137, 420
BshVI ATCGAT 1 cut(s) 355
BsiHKAI GWGCWC 2 cut(s) 478, 568
BsiWI CGTACG 1 cut(s) 744
BslFI GGGAC 1 cut(s) 1086
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 2 cut(s) 248, 373
BsmFI GGGAC 1 cut(s) 1086
BsnI GGCC 1 cut(s) 1123
Bso31I GGTCTC 1 cut(s) 248
Bsp119I TTCGAA 1 cut(s) 739
Bsp1286I GDGCHC 5 cut(s) 18, 142, 423, 478, 568
Bsp143I GATC 9 cut(s) 54, 232, 259, 289, 352, 762, 1000, 1057, 1144
Bsp19I CCATGG 1 cut(s) 483
BspACI CCGC 3 cut(s) 295, 405, 524
BspANI GGCC 1 cut(s) 1123
BspDI ATCGAT 1 cut(s) 355
BspLI GGNNCC 5 cut(s) 139, 320, 422, 438, 1074
BspMI ACCTGC 1 cut(s) 1114
BspPI GGATC 3 cut(s) 227, 360, 1008
BspQI GCTCTTC 1 cut(s) 784
BspT104I TTCGAA 1 cut(s) 739
BspT107I GGYRCC 2 cut(s) 137, 420
BspTNI GGTCTC 1 cut(s) 248
BsrI ACTGG 2 cut(s) 154, 605
BssECI CCNNGG 1 cut(s) 483
BssMI GATC 9 cut(s) 54, 232, 259, 289, 352, 762, 1000, 1057, 1144
BssT1I CCWWGG 1 cut(s) 483
Bst2UI CCWGG 3 cut(s) 639, 987, 1077
Bst4CI ACNGT 6 cut(s) 285, 337, 365, 480, 670, 971
Bst6I CTCTTC 2 cut(s) 720, 784
BstAPI GCANNNNNTGC 1 cut(s) 584
BstBAI YACGTR 1 cut(s) 563
BstBI TTCGAA 1 cut(s) 739
BstC8I GCNNGC 5 cut(s) 6, 405, 568, 722, 775
BstDEI CTNAG 1 cut(s) 996
BstDSI CCRYGG 1 cut(s) 483
BstF5I GGATG 1 cut(s) 41
BstHHI GCGC 2 cut(s) 1068, 1111
BstKTI GATC 9 cut(s) 57, 235, 262, 292, 355, 765, 1003, 1060, 1147
BstMAI GTCTC 2 cut(s) 248, 373
BstMBI GATC 9 cut(s) 54, 232, 259, 289, 352, 762, 1000, 1057, 1144
BstMWI GCNNNNNNNGC 6 cut(s) 22, 395, 404, 584, 717, 811
BstNI CCWGG 3 cut(s) 639, 987, 1077
BstPAI GACNNNNGTC 1 cut(s) 276
BstSCI CCNGG 3 cut(s) 637, 985, 1075
BstSFI CTRYAG 1 cut(s) 1148
BstSLI GKGCMC 3 cut(s) 142, 423, 568
BstV1I GCAGC 4 cut(s) 34, 118, 407, 757
BstX2I RGATCY 1 cut(s) 1144
BstYI RGATCY 1 cut(s) 1144
Bsu15I ATCGAT 1 cut(s) 355
Bsu36I CCTNAGG 1 cut(s) 996
BsuRI GGCC 1 cut(s) 1123
BsuTUI ATCGAT 1 cut(s) 355
BtgI CCRYGG 1 cut(s) 483
BtgZI GCGATG 1 cut(s) 384
BtsCI GGATG 1 cut(s) 41
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 5 cut(s) 71, 201, 370, 476, 666
BveI ACCTGC 1 cut(s) 1114
Cac8I GCNNGC 5 cut(s) 6, 405, 568, 722, 775
CfoI GCGC 2 cut(s) 1068, 1111
Cfr13I GGNCC 2 cut(s) 487, 1073
ClaI ATCGAT 1 cut(s) 355
CsiI ACCWGGT 1 cut(s) 1075
Csp6I GTAC 3 cut(s) 333, 745, 972
CviAII CATG 2 cut(s) 484, 571
CviQI GTAC 3 cut(s) 333, 745, 972
DdeI CTNAG 1 cut(s) 996
DpnI GATC 9 cut(s) 56, 234, 261, 291, 354, 764, 1002, 1059, 1146
DpnII GATC 9 cut(s) 54, 232, 259, 289, 352, 762, 1000, 1057, 1144
DraI TTTAAA 1 cut(s) 843
Eam1104I CTCTTC 2 cut(s) 720, 784
EarI CTCTTC 2 cut(s) 720, 784
Eco130I CCWWGG 1 cut(s) 483
Eco24I GRGCYC 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 248
Eco47I GGWCC 2 cut(s) 487, 1073
Eco57I CTGAAG 2 cut(s) 558, 905
Eco72I CACGTG 1 cut(s) 563
Eco81I CCTNAGG 1 cut(s) 996
EcoO109I RGGNCCY 1 cut(s) 1073
EcoRI GAATTC 1 cut(s) 82
EcoRII CCWGG 3 cut(s) 637, 985, 1075
EcoT14I CCWWGG 1 cut(s) 483
EcoT38I GRGCYC 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 483
FaeI CATG 2 cut(s) 487, 574
FaqI GGGAC 1 cut(s) 1086
FatI CATG 2 cut(s) 483, 570
FauI CCCGC 1 cut(s) 412
FbaI TGATCA 1 cut(s) 762
Fnu4HI GCNGC 4 cut(s) 23, 107, 396, 771
FokI GGATG 1 cut(s) 28
FriOI GRGCYC 1 cut(s) 18
Fsp4HI GCNGC 4 cut(s) 23, 107, 396, 771
FspBI CTAG 3 cut(s) 390, 588, 707
FspI TGCGCA 1 cut(s) 1110
GlaI GCGC 2 cut(s) 1067, 1110
GluI GCNGC 4 cut(s) 23, 107, 396, 771
HaeIII GGCC 1 cut(s) 1123
HhaI GCGC 2 cut(s) 1068, 1111
Hin1II CATG 2 cut(s) 487, 574
Hin6I GCGC 2 cut(s) 1066, 1109
HinP1I GCGC 2 cut(s) 1066, 1109
HincII GTYRAC 1 cut(s) 281
HindII GTYRAC 1 cut(s) 281
HinfI GANTC 4 cut(s) 557, 907, 916, 1019
HphI GGTGA 5 cut(s) 164, 645, 653, 1049, 1095
Hpy166II GTNNAC 4 cut(s) 243, 281, 566, 821
Hpy188I TCNGA 7 cut(s) 46, 93, 795, 877, 924, 1062, 1090
Hpy188III TCNNGA 5 cut(s) 372, 509, 884, 965, 1016
Hpy8I GTNNAC 4 cut(s) 243, 281, 566, 821
HpyAV CCTTC 2 cut(s) 687, 1107
HpyCH4III ACNGT 6 cut(s) 285, 337, 365, 480, 670, 971
HpyCH4IV ACGT 3 cut(s) 562, 743, 1007
HpyCH4V TGCA 7 cut(s) 8, 106, 566, 578, 674, 773, 934
HpyF10VI GCNNNNNNNGC 6 cut(s) 22, 395, 404, 584, 717, 811
HpyF3I CTNAG 1 cut(s) 996
HpySE526I ACGT 3 cut(s) 562, 743, 1007
Hsp92II CATG 2 cut(s) 487, 574
HspAI GCGC 2 cut(s) 1066, 1109
Ksp22I TGATCA 1 cut(s) 762
Kzo9I GATC 9 cut(s) 54, 232, 259, 289, 352, 762, 1000, 1057, 1144
LguI GCTCTTC 1 cut(s) 784
LmnI GCTCC 2 cut(s) 877, 1099
Lsp1109I GCAGC 4 cut(s) 34, 118, 407, 757
LweI GCATC 3 cut(s) 407, 511, 889
MabI ACCWGGT 1 cut(s) 1075
MaeI CTAG 3 cut(s) 390, 588, 707
MaeII ACGT 3 cut(s) 562, 743, 1007
MaeIII GTNAC 5 cut(s) 152, 448, 558, 607, 965
MalI GATC 9 cut(s) 56, 234, 261, 291, 354, 764, 1002, 1059, 1146
MboI GATC 9 cut(s) 54, 232, 259, 289, 352, 762, 1000, 1057, 1144
MboII GAAGA 5 cut(s) 64, 707, 728, 771, 911
MfeI CAATTG 1 cut(s) 9
MflI RGATCY 1 cut(s) 1144
MhlI GDGCHC 5 cut(s) 18, 142, 423, 478, 568
MluCI AATT 6 cut(s) 9, 82, 344, 384, 838, 887
MlyI GAGTC 3 cut(s) 566, 901, 1013
MmeI TCCRAC 2 cut(s) 576, 881
MseI TTAA 8 cut(s) 347, 383, 432, 837, 842, 890, 1050, 1133
MspR9I CCNGG 3 cut(s) 639, 987, 1077
MunI CAATTG 1 cut(s) 9
MvaI CCWGG 3 cut(s) 639, 987, 1077
MwoI GCNNNNNNNGC 6 cut(s) 22, 395, 404, 584, 717, 811
NcoI CCATGG 1 cut(s) 483
NdeII GATC 9 cut(s) 54, 232, 259, 289, 352, 762, 1000, 1057, 1144
NlaIII CATG 2 cut(s) 487, 574
NlaIV GGNNCC 5 cut(s) 139, 320, 422, 438, 1074
NmeAIII GCCGAG 1 cut(s) 580
NmuCI GTSAC 4 cut(s) 152, 558, 607, 965
NsbI TGCGCA 1 cut(s) 1110
NspV TTCGAA 1 cut(s) 739
PaqCI CACCTGC 1 cut(s) 1114
PciSI GCTCTTC 1 cut(s) 784
PcsI WCGNNNNNNNCGW 1 cut(s) 724
PfeI GAWTC 1 cut(s) 916
Pfl23II CGTACG 1 cut(s) 744
PflMI CCANNNNNTGG 1 cut(s) 149
PkrI GCNGC 4 cut(s) 24, 108, 397, 772
PleI GAGTC 3 cut(s) 565, 901, 1013
PmaCI CACGTG 1 cut(s) 563
PmlI CACGTG 1 cut(s) 563
PpsI GAGTC 3 cut(s) 565, 901, 1013
Ppu21I YACGTR 1 cut(s) 563
PpuMI RGGWCCY 1 cut(s) 1073
PshAI GACNNNNGTC 1 cut(s) 276
PshBI ATTAAT 1 cut(s) 383
Psp5II RGGWCCY 1 cut(s) 1073
Psp6I CCWGG 3 cut(s) 637, 985, 1075
PspCI CACGTG 1 cut(s) 563
PspGI CCWGG 3 cut(s) 637, 985, 1075
PspLI CGTACG 1 cut(s) 744
PspN4I GGNNCC 5 cut(s) 139, 320, 422, 438, 1074
PspPI GGNCC 2 cut(s) 487, 1073
PspPPI RGGWCCY 1 cut(s) 1073
PsuI RGATCY 1 cut(s) 1144
RsaI GTAC 3 cut(s) 334, 746, 973
RsaNI GTAC 3 cut(s) 333, 745, 972
SapI GCTCTTC 1 cut(s) 784
SaqAI TTAA 8 cut(s) 347, 383, 432, 837, 842, 890, 1050, 1133
SatI GCNGC 4 cut(s) 23, 107, 396, 771
Sau3AI GATC 9 cut(s) 54, 232, 259, 289, 352, 762, 1000, 1057, 1144
Sau96I GGNCC 2 cut(s) 487, 1073
ScaI AGTACT 1 cut(s) 973
SchI GAGTC 3 cut(s) 566, 901, 1013
ScrFI CCNGG 3 cut(s) 639, 987, 1077
SduI GDGCHC 5 cut(s) 18, 142, 423, 478, 568
SexAI ACCWGGT 1 cut(s) 1075
SfaNI GCATC 3 cut(s) 407, 511, 889
SfcI CTRYAG 1 cut(s) 1148
SfuI TTCGAA 1 cut(s) 739
SinI GGWCC 2 cut(s) 487, 1073
Sse9I AATT 6 cut(s) 9, 82, 344, 384, 838, 887
SsiI CCGC 3 cut(s) 295, 405, 524
SspMI CTAG 3 cut(s) 390, 588, 707
StyD4I CCNGG 3 cut(s) 637, 985, 1075
StyI CCWWGG 1 cut(s) 483
TaaI ACNGT 6 cut(s) 285, 337, 365, 480, 670, 971
TaiI ACGT 3 cut(s) 565, 746, 1010
TaqI TCGA 6 cut(s) 186, 355, 373, 686, 727, 739
TaqII GACCGA 1 cut(s) 272
TasI AATT 6 cut(s) 9, 82, 344, 384, 838, 887
TatI WGTACW 1 cut(s) 971
TfiI GAWTC 1 cut(s) 916
Tru1I TTAA 8 cut(s) 347, 383, 432, 837, 842, 890, 1050, 1133
Tru9I TTAA 8 cut(s) 347, 383, 432, 837, 842, 890, 1050, 1133
TscAI CASTG 5 cut(s) 71, 208, 370, 483, 673
TseFI GTSAC 4 cut(s) 152, 558, 607, 965
TseI GCWGC 4 cut(s) 22, 106, 395, 770
Tsp45I GTSAC 4 cut(s) 152, 558, 607, 965
TspDTI ATGAA 3 cut(s) 289, 945, 1089
TspRI CASTG 5 cut(s) 71, 208, 370, 483, 673
Van91I CCANNNNNTGG 1 cut(s) 149
VneI GTGCAC 1 cut(s) 564
VpaK11BI GGWCC 2 cut(s) 487, 1073
VspI ATTAAT 1 cut(s) 383
XapI RAATTY 1 cut(s) 82
XspI CTAG 3 cut(s) 390, 588, 707
ZrmI AGTACT 1 cut(s) 973
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.