Rh3BG314300

DNA methyltransferase 1-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0006176
Physical Location & Seq
Forward (+)
32004968 .. 32008488
3521 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG314300.1

Sequence Viewer

Length: 816 bp
ATGATGATAAATAACTTTCTATTCATTGCAGTCTCTCGACATATATTAATTGCTAGAGCAGCATCGCCCGCAGATGTATCAGGGCACCCTCTTGTTAAGGAACCGTACAAAGTTACACAAGAGAAAGAGCGCAAGAGAGCACTATCCATGGTCCTTTCTCAAACAAAAAATCAAGAGCGAAAAGATGCGGAGGTTCTTGCTGAAGCCAAGAGAATAGCCGAGTCACGTGCACGCATGGTTGCAAGGAGTGCTAGAGAGTTGGAGTTGCCTGTCACATTCAATGATGAGAGGGGTATTGTTCCTGGTGAAAGTATATCACCATTATCCAGCACTGTTGCACCTTCAACTTCGATGGATAATACTTCCACTCTAGGCACTCTTCGCTTGCTTCGAGTGTATCTTAGAACGTACGCACTTGACCAGATGATCATAGCTGCAACCTCTTCTGCTGGACTTCGGACTATCAAGCGTGTTGAGCAAAGTTTACAAGAACTTGGGGTTAATTTAAAACCAAGAGTTCCAACTAAAGCTGTTTGTTCGGAGCATCTTGAATTAAGAAAAGAAATACTGACTCTATTGAATCTTCAGAAAGAGTTGCAATATAAGGAGGCAGATGGTTCATCTTATCGTGACAGTACTTACGAAACACCAGGCACACCGAAGGATCGCACGTTTGTTCCCGACTCAATGATGTTTGGAGGTGAAAGAGTTGTTAAACGAGATCAGAAGCGCAAGGGACCTGGTAGGGTGTCAGAAGCTCCTTCATCACCTGCGCAGTCTAAAAGGCCAAGAAAGTTAAAGGCAACAGATCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0000981 GO:0001085 GO:0001103 GO:0003674 GO:0003700 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0034641 GO:0035267 GO:0036211 GO:0042306 GO:0042307 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0046822 GO:0046824 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051171 GO:0051172 GO:0051222 GO:0051223 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0090316 GO:0097346 GO:0140110 GO:1900180 GO:1900182 GO:1901360 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904949 GO:1904951 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DMAP1 SANT_DAMP1_like

Protein Analysis

271

Amino Acids

30.23

Weight (kDa)

9.93

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DMAP1 PF05499 148 - 210 2.2e-06 DNA methyltransferase 1-associated protein 1 (DMAP1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 778
Acc16I TGCGCA 1 cut(s) 774
Acc36I ACCTGC 1 cut(s) 778
AccB1I GGYRCC 1 cut(s) 84
AciI CCGC 2 cut(s) 69, 188
AclWI GGATC 1 cut(s) 672
AcuI CTGAAG 2 cut(s) 222, 569
AcvI CACGTG 1 cut(s) 227
AfaI GTAC 3 cut(s) 107, 410, 637
AgsI TTSAA 4 cut(s) 280, 345, 551, 580
AjnI CCWGG 3 cut(s) 301, 649, 739
AluBI AGCT 3 cut(s) 434, 530, 758
AluI AGCT 3 cut(s) 434, 530, 758
Alw21I GWGCWC 2 cut(s) 142, 232
Alw26I GTCTC 1 cut(s) 37
Alw44I GTGCAC 1 cut(s) 228
AlwI GGATC 1 cut(s) 672
AoxI GGCC 1 cut(s) 785
ApaLI GTGCAC 1 cut(s) 228
ApeKI GCWGC 2 cut(s) 59, 434
AseI ATTAAT 1 cut(s) 47
AspLEI GCGC 3 cut(s) 132, 732, 775
AspS9I GGNCC 2 cut(s) 151, 737
AsuHPI GGTGA 4 cut(s) 309, 317, 713, 759
AvaII GGWCC 2 cut(s) 151, 737
BaeGI GKGCMC 2 cut(s) 87, 232
BanI GGYRCC 1 cut(s) 84
BbrPI CACGTG 1 cut(s) 227
Bbv12I GWGCWC 2 cut(s) 142, 232
BbvI GCAGC 2 cut(s) 71, 421
BccI CCATC 2 cut(s) 346, 608
BcgI CGANNNNNNTGC 2 cut(s) 209, 243
BciT130I CCWGG 3 cut(s) 303, 651, 741
BclI TGATCA 1 cut(s) 426
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 3 cut(s) 54, 252, 371
BfmI CTRYAG 1 cut(s) 812
BfuAI ACCTGC 1 cut(s) 778
BglII AGATCT 1 cut(s) 808
BisI GCNGC 2 cut(s) 60, 435
BlsI GCNGC 2 cut(s) 61, 436
BmcAI AGTACT 1 cut(s) 637
Bme1390I CCNGG 3 cut(s) 303, 651, 741
Bme18I GGWCC 2 cut(s) 151, 737
BmgT120I GGNCC 2 cut(s) 151, 737
BmiI GGNNCC 3 cut(s) 86, 102, 738
BmrFI CCNGG 3 cut(s) 303, 651, 741
BmsI GCATC 3 cut(s) 71, 175, 553
BsaAI YACGTR 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 147
Bse3DI GCAATG 1 cut(s) 24
BseBI CCWGG 3 cut(s) 303, 651, 741
BseDI CCNNGG 1 cut(s) 147
BseMI GCAATG 1 cut(s) 24
BseSI GKGCMC 2 cut(s) 87, 232
BseXI GCAGC 2 cut(s) 71, 421
BshFI GGCC 1 cut(s) 787
BshNI GGYRCC 1 cut(s) 84
BsiHKAI GWGCWC 2 cut(s) 142, 232
BsiWI CGTACG 1 cut(s) 408
BslFI GGGAC 1 cut(s) 750
BsmAI GTCTC 1 cut(s) 37
BsmFI GGGAC 1 cut(s) 750
BsnI GGCC 1 cut(s) 787
Bsp1286I GDGCHC 3 cut(s) 87, 142, 232
Bsp143I GATC 4 cut(s) 426, 664, 721, 808
Bsp19I CCATGG 1 cut(s) 147
BspACI CCGC 2 cut(s) 69, 188
BspANI GGCC 1 cut(s) 787
BspLI GGNNCC 3 cut(s) 86, 102, 738
BspMI ACCTGC 1 cut(s) 778
BspPI GGATC 1 cut(s) 672
BspT107I GGYRCC 1 cut(s) 84
BsrDI GCAATG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 4 cut(s) 426, 664, 721, 808
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 3 cut(s) 303, 651, 741
Bst4CI ACNGT 3 cut(s) 105, 334, 635
Bst6I CTCTTC 2 cut(s) 384, 448
BstAPI GCANNNNNTGC 1 cut(s) 248
BstBAI YACGTR 1 cut(s) 227
BstC8I GCNNGC 3 cut(s) 69, 232, 386
BstDEI CTNAG 1 cut(s) 401
BstDSI CCRYGG 1 cut(s) 147
BstHHI GCGC 3 cut(s) 132, 732, 775
BstKTI GATC 4 cut(s) 429, 667, 724, 811
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 4 cut(s) 426, 664, 721, 808
BstMWI GCNNNNNNNGC 5 cut(s) 59, 68, 248, 381, 475
BstNI CCWGG 3 cut(s) 303, 651, 741
BstSCI CCNGG 3 cut(s) 301, 649, 739
BstSFI CTRYAG 1 cut(s) 812
BstSLI GKGCMC 2 cut(s) 87, 232
BstV1I GCAGC 2 cut(s) 71, 421
BstX2I RGATCY 1 cut(s) 808
BstYI RGATCY 1 cut(s) 808
BsuRI GGCC 1 cut(s) 787
BtgI CCRYGG 1 cut(s) 147
BtgZI GCGATG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 330
BveI ACCTGC 1 cut(s) 778
Cac8I GCNNGC 3 cut(s) 69, 232, 386
CfoI GCGC 3 cut(s) 132, 732, 775
Cfr13I GGNCC 2 cut(s) 151, 737
CsiI ACCWGGT 1 cut(s) 739
Csp6I GTAC 3 cut(s) 106, 409, 636
CviAII CATG 2 cut(s) 148, 235
CviJI RGCY 6 cut(s) 206, 218, 434, 530, 758, 787
CviKI_1 RGCY 6 cut(s) 206, 218, 434, 530, 758, 787
CviQI GTAC 3 cut(s) 106, 409, 636
DdeI CTNAG 1 cut(s) 401
DpnI GATC 4 cut(s) 428, 666, 723, 810
DpnII GATC 4 cut(s) 426, 664, 721, 808
DraI TTTAAA 1 cut(s) 507
Eam1104I CTCTTC 2 cut(s) 384, 448
EarI CTCTTC 2 cut(s) 384, 448
Eco130I CCWWGG 1 cut(s) 147
Eco47I GGWCC 2 cut(s) 151, 737
Eco57I CTGAAG 2 cut(s) 222, 569
Eco72I CACGTG 1 cut(s) 227
EcoO109I RGGNCCY 1 cut(s) 737
EcoRII CCWGG 3 cut(s) 301, 649, 739
EcoT14I CCWWGG 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 147
FaeI CATG 2 cut(s) 151, 238
FaiI YATR 7 cut(s) 42, 44, 149, 236, 314, 431, 603
FaqI GGGAC 1 cut(s) 750
FatI CATG 2 cut(s) 147, 234
FauI CCCGC 1 cut(s) 76
FbaI TGATCA 1 cut(s) 426
Fnu4HI GCNGC 2 cut(s) 60, 435
Fsp4HI GCNGC 2 cut(s) 60, 435
FspBI CTAG 3 cut(s) 54, 252, 371
FspI TGCGCA 1 cut(s) 774
GlaI GCGC 3 cut(s) 131, 731, 774
GluI GCNGC 2 cut(s) 60, 435
HaeIII GGCC 1 cut(s) 787
HhaI GCGC 3 cut(s) 132, 732, 775
Hin1II CATG 2 cut(s) 151, 238
Hin6I GCGC 3 cut(s) 130, 730, 773
HinP1I GCGC 3 cut(s) 130, 730, 773
HinfI GANTC 4 cut(s) 221, 571, 580, 683
HphI GGTGA 4 cut(s) 309, 317, 713, 759
Hpy166II GTNNAC 2 cut(s) 230, 485
Hpy188I TCNGA 5 cut(s) 459, 541, 588, 726, 754
Hpy188III TCNNGA 5 cut(s) 36, 173, 548, 629, 680
Hpy8I GTNNAC 2 cut(s) 230, 485
HpyAV CCTTC 3 cut(s) 351, 655, 771
HpyCH4III ACNGT 3 cut(s) 105, 334, 635
HpyCH4IV ACGT 3 cut(s) 226, 407, 671
HpyCH4V TGCA 6 cut(s) 29, 230, 242, 338, 437, 598
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 68, 248, 381, 475
HpyF3I CTNAG 1 cut(s) 401
HpySE526I ACGT 3 cut(s) 226, 407, 671
Hsp92II CATG 2 cut(s) 151, 238
HspAI GCGC 3 cut(s) 130, 730, 773
Ksp22I TGATCA 1 cut(s) 426
Kzo9I GATC 4 cut(s) 426, 664, 721, 808
LmnI GCTCC 2 cut(s) 541, 763
Lsp1109I GCAGC 2 cut(s) 71, 421
LweI GCATC 3 cut(s) 71, 175, 553
MabI ACCWGGT 1 cut(s) 739
MaeI CTAG 3 cut(s) 54, 252, 371
MaeII ACGT 3 cut(s) 226, 407, 671
MaeIII GTNAC 4 cut(s) 112, 222, 271, 629
MalI GATC 4 cut(s) 428, 666, 723, 810
MboI GATC 4 cut(s) 426, 664, 721, 808
MboII GAAGA 3 cut(s) 371, 435, 575
MflI RGATCY 1 cut(s) 808
MhlI GDGCHC 3 cut(s) 87, 142, 232
MluCI AATT 3 cut(s) 48, 502, 551
MlyI GAGTC 3 cut(s) 230, 565, 677
MmeI TCCRAC 2 cut(s) 240, 545
MnlI CCTC 6 cut(s) 99, 184, 282, 451, 601, 692
MseI TTAA 7 cut(s) 47, 96, 501, 506, 554, 714, 797
MspR9I CCNGG 3 cut(s) 303, 651, 741
MvaI CCWGG 3 cut(s) 303, 651, 741
MwoI GCNNNNNNNGC 5 cut(s) 59, 68, 248, 381, 475
NcoI CCATGG 1 cut(s) 147
NdeII GATC 4 cut(s) 426, 664, 721, 808
NlaIII CATG 2 cut(s) 151, 238
NlaIV GGNNCC 3 cut(s) 86, 102, 738
NmeAIII GCCGAG 1 cut(s) 244
NmuCI GTSAC 3 cut(s) 222, 271, 629
NsbI TGCGCA 1 cut(s) 774
PaqCI CACCTGC 1 cut(s) 778
PcsI WCGNNNNNNNCGW 1 cut(s) 388
PfeI GAWTC 1 cut(s) 580
Pfl23II CGTACG 1 cut(s) 408
PkrI GCNGC 2 cut(s) 61, 436
PleI GAGTC 3 cut(s) 229, 565, 677
PmaCI CACGTG 1 cut(s) 227
PmlI CACGTG 1 cut(s) 227
PpsI GAGTC 3 cut(s) 229, 565, 677
Ppu21I YACGTR 1 cut(s) 227
PpuMI RGGWCCY 1 cut(s) 737
PshBI ATTAAT 1 cut(s) 47
Psp5II RGGWCCY 1 cut(s) 737
Psp6I CCWGG 3 cut(s) 301, 649, 739
PspCI CACGTG 1 cut(s) 227
PspGI CCWGG 3 cut(s) 301, 649, 739
PspLI CGTACG 1 cut(s) 408
PspN4I GGNNCC 3 cut(s) 86, 102, 738
PspPI GGNCC 2 cut(s) 151, 737
PspPPI RGGWCCY 1 cut(s) 737
PsuI RGATCY 1 cut(s) 808
RsaI GTAC 3 cut(s) 107, 410, 637
RsaNI GTAC 3 cut(s) 106, 409, 636
SaqAI TTAA 7 cut(s) 47, 96, 501, 506, 554, 714, 797
SatI GCNGC 2 cut(s) 60, 435
Sau3AI GATC 4 cut(s) 426, 664, 721, 808
Sau96I GGNCC 2 cut(s) 151, 737
ScaI AGTACT 1 cut(s) 637
SchI GAGTC 3 cut(s) 230, 565, 677
ScrFI CCNGG 3 cut(s) 303, 651, 741
SduI GDGCHC 3 cut(s) 87, 142, 232
SexAI ACCWGGT 1 cut(s) 739
SfaNI GCATC 3 cut(s) 71, 175, 553
SfcI CTRYAG 1 cut(s) 812
SinI GGWCC 2 cut(s) 151, 737
Sse9I AATT 3 cut(s) 48, 502, 551
SsiI CCGC 2 cut(s) 69, 188
SspMI CTAG 3 cut(s) 54, 252, 371
StyD4I CCNGG 3 cut(s) 301, 649, 739
StyI CCWWGG 1 cut(s) 147
TaaI ACNGT 3 cut(s) 105, 334, 635
TaiI ACGT 3 cut(s) 229, 410, 674
TaqI TCGA 3 cut(s) 37, 350, 391
TasI AATT 3 cut(s) 48, 502, 551
TatI WGTACW 1 cut(s) 635
TfiI GAWTC 1 cut(s) 580
Tru1I TTAA 7 cut(s) 47, 96, 501, 506, 554, 714, 797
Tru9I TTAA 7 cut(s) 47, 96, 501, 506, 554, 714, 797
TscAI CASTG 1 cut(s) 337
TseFI GTSAC 3 cut(s) 222, 271, 629
TseI GCWGC 2 cut(s) 59, 434
Tsp45I GTSAC 3 cut(s) 222, 271, 629
TspDTI ATGAA 3 cut(s) 13, 609, 753
TspRI CASTG 1 cut(s) 337
VneI GTGCAC 1 cut(s) 228
VpaK11BI GGWCC 2 cut(s) 151, 737
VspI ATTAAT 1 cut(s) 47
XspI CTAG 3 cut(s) 54, 252, 371
ZrmI AGTACT 1 cut(s) 637
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.