Rh3AG278400

DNA methyltransferase 1-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0006176
Physical Location & Seq
Forward (+)
32372733 .. 32377282
4550 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG278400.1

Sequence Viewer

Length: 831 bp
ATGGATGCCAAGGACATCTTGGGTTTGCCCAAAACCACGCATCCCCTATCGCAGGAGAAGAAATCGCGACCCCCCAAGGAGTCTCAGCGCAAACCCGATGGCATTTCACGCGAGGAACCGTACAAAGTTACACAAGAGAAAGAGCGCAAGAGAGCACTGTCCATGGTCCTTTCTCAAACAAAAAATCAAGAGCGAAAAGATGCAGAGGTTCTTGCTGAAGCCAAGAGAATAGCCGAGTCACGTGCACGCATGGTTGCAAGGAGTGCTAGAGAGTTGGAGTTGCCTGTCACATTCAATGATGAGAGGGGTATTGTTCCTGGTGAAAGTATATCACCATTATCCAGCACTGTTGCACCTTCAACTTCGATGGATAATACTTCGACTCTAGGCACTCTTCGCTTGCTTCGAGTGTATCTTAGAACGTACGCACTTGACCAGATGATCATAGCTGCAAGCTCTTCTGCTGGACTTCGGACTATCAAGCGTGTCGAGCAAAGTTTACAAGAACTTGGGGTTAATTTAAAACCAAGAGTTCCAACTAAAGCTGTTTGTTCGGAGCATCTTGAATTAAGAAAAGAAATACTGACTCTATTGAATCTTCAGAAAGAGTTGCAATATAAGGAGGCAGATGGTTCATCTTATCGTGACAGTACTTACGAAACACCAGGCACACCGAAGGATCGCACTTTTGTTCCCGACTCAATGATGTTTGGAGGTGAAAGAGTTGTTAAACGAGATCAGAAGCGCAAGGGACCTGGTAGGGTGTCAGAAGCTCCTTCATCACCTGCGCAGTCTAAAAGGCCAAGAAAGTTAAAGGCAACGGATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000122 GO:0000123 GO:0000228 GO:0000785 GO:0000790 GO:0000812 GO:0000981 GO:0001085 GO:0001103 GO:0003674 GO:0003700 GO:0003712 GO:0003714 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006355 GO:0006357 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008134 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016569 GO:0016570 GO:0016573 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0031248 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032259 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0032991 GO:0033157 GO:0034641 GO:0035267 GO:0036211 GO:0042306 GO:0042307 GO:0043170 GO:0043189 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043543 GO:0043967 GO:0043968 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0044728 GO:0045892 GO:0045934 GO:0046483 GO:0046822 GO:0046824 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051049 GO:0051050 GO:0051171 GO:0051172 GO:0051222 GO:0051223 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0060341 GO:0065007 GO:0070013 GO:0070201 GO:0070491 GO:0070603 GO:0071704 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0090316 GO:0097346 GO:0140110 GO:1900180 GO:1900182 GO:1901360 GO:1901564 GO:1902493 GO:1902494 GO:1902562 GO:1902679 GO:1903506 GO:1903507 GO:1903827 GO:1903829 GO:1904589 GO:1904591 GO:1904949 GO:1904951 GO:1990234 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DMAP1 SANT_DAMP1_like

Protein Analysis

276

Amino Acids

30.93

Weight (kDa)

9.85

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DMAP1 PF05499 153 - 215 2.1e-06 DNA methyltransferase 1-associated protein 1 (DMAP1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 793
Acc16I TGCGCA 1 cut(s) 789
Acc36I ACCTGC 1 cut(s) 793
AccII CGCG 2 cut(s) 67, 111
AclWI GGATC 1 cut(s) 687
AcuI CTGAAG 2 cut(s) 237, 584
AcvI CACGTG 1 cut(s) 242
AfaI GTAC 3 cut(s) 122, 425, 652
AfiI CCNNNNNNNGG 1 cut(s) 52
AgsI TTSAA 4 cut(s) 295, 360, 566, 595
AjnI CCWGG 3 cut(s) 316, 664, 754
AluBI AGCT 4 cut(s) 449, 456, 545, 773
AluI AGCT 4 cut(s) 449, 456, 545, 773
Alw21I GWGCWC 2 cut(s) 157, 247
Alw26I GTCTC 1 cut(s) 87
Alw44I GTGCAC 1 cut(s) 243
AlwI GGATC 1 cut(s) 687
AoxI GGCC 1 cut(s) 800
ApaLI GTGCAC 1 cut(s) 243
ApeKI GCWGC 1 cut(s) 449
AspLEI GCGC 4 cut(s) 90, 147, 747, 790
AspS9I GGNCC 2 cut(s) 166, 752
AsuHPI GGTGA 4 cut(s) 324, 332, 728, 774
AvaII GGWCC 2 cut(s) 166, 752
BaeGI GKGCMC 1 cut(s) 247
BbrPI CACGTG 1 cut(s) 242
Bbv12I GWGCWC 2 cut(s) 157, 247
BbvI GCAGC 1 cut(s) 436
BccI CCATC 3 cut(s) 92, 361, 623
BcgI CGANNNNNNTGC 2 cut(s) 224, 258
BciT130I CCWGG 3 cut(s) 318, 666, 756
BclI TGATCA 1 cut(s) 441
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 2 cut(s) 267, 386
BfuAI ACCTGC 1 cut(s) 793
BisI GCNGC 1 cut(s) 450
BlsI GCNGC 1 cut(s) 451
BmcAI AGTACT 1 cut(s) 652
Bme1390I CCNGG 3 cut(s) 318, 666, 756
Bme18I GGWCC 2 cut(s) 166, 752
BmgT120I GGNCC 2 cut(s) 166, 752
BmiI GGNNCC 2 cut(s) 117, 753
BmrFI CCNGG 3 cut(s) 318, 666, 756
BmsI GCATC 3 cut(s) 49, 190, 568
BsaAI YACGTR 1 cut(s) 242
BsaJI CCNNGG 3 cut(s) 9, 75, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 52
BseBI CCWGG 3 cut(s) 318, 666, 756
BseDI CCNNGG 3 cut(s) 9, 75, 162
BseGI GGATG 2 cut(s) 10, 40
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 98
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 1 cut(s) 436
Bsh1236I CGCG 2 cut(s) 67, 111
BshFI GGCC 1 cut(s) 802
BsiHKAI GWGCWC 2 cut(s) 157, 247
BsiWI CGTACG 1 cut(s) 423
BslFI GGGAC 1 cut(s) 765
BslI CCNNNNNNNGG 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 765
BsnI GGCC 1 cut(s) 802
Bsp1286I GDGCHC 2 cut(s) 157, 247
Bsp143I GATC 4 cut(s) 441, 679, 736, 823
Bsp19I CCATGG 1 cut(s) 162
Bsp68I TCGCGA 1 cut(s) 67
BspANI GGCC 1 cut(s) 802
BspCNI CTCAG 1 cut(s) 97
BspFNI CGCG 2 cut(s) 67, 111
BspLI GGNNCC 2 cut(s) 117, 753
BspMI ACCTGC 1 cut(s) 793
BspPI GGATC 1 cut(s) 687
BspQI GCTCTTC 1 cut(s) 463
BssECI CCNNGG 3 cut(s) 9, 75, 162
BssMI GATC 4 cut(s) 441, 679, 736, 823
BssT1I CCWWGG 3 cut(s) 9, 75, 162
Bst2UI CCWGG 3 cut(s) 318, 666, 756
Bst4CI ACNGT 4 cut(s) 120, 159, 349, 650
Bst6I CTCTTC 2 cut(s) 399, 463
BstAPI GCANNNNNTGC 1 cut(s) 263
BstBAI YACGTR 1 cut(s) 242
BstC8I GCNNGC 3 cut(s) 247, 401, 454
BstDEI CTNAG 2 cut(s) 84, 416
BstDSI CCRYGG 1 cut(s) 162
BstENI CCTNNNNNAGG 1 cut(s) 50
BstF5I GGATG 2 cut(s) 10, 40
BstFNI CGCG 2 cut(s) 67, 111
BstHHI GCGC 4 cut(s) 90, 147, 747, 790
BstKTI GATC 4 cut(s) 444, 682, 739, 826
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 4 cut(s) 441, 679, 736, 823
BstMWI GCNNNNNNNGC 4 cut(s) 108, 263, 396, 490
BstNI CCWGG 3 cut(s) 318, 666, 756
BstSCI CCNGG 3 cut(s) 316, 664, 754
BstSLI GKGCMC 1 cut(s) 247
BstUI CGCG 2 cut(s) 67, 111
BstV1I GCAGC 1 cut(s) 436
BstX2I RGATCY 1 cut(s) 823
BstYI RGATCY 1 cut(s) 823
BsuRI GGCC 1 cut(s) 802
BtgI CCRYGG 1 cut(s) 162
BtsCI GGATG 2 cut(s) 10, 40
BtsIMutI CAGTG 2 cut(s) 155, 345
BtuMI TCGCGA 1 cut(s) 67
BveI ACCTGC 1 cut(s) 793
Cac8I GCNNGC 3 cut(s) 247, 401, 454
CfoI GCGC 4 cut(s) 90, 147, 747, 790
Cfr13I GGNCC 2 cut(s) 166, 752
CsiI ACCWGGT 1 cut(s) 754
Csp6I GTAC 3 cut(s) 121, 424, 651
CviAII CATG 2 cut(s) 163, 250
CviJI RGCY 7 cut(s) 221, 233, 449, 456, 545, 773, 802
CviKI_1 RGCY 7 cut(s) 221, 233, 449, 456, 545, 773, 802
CviQI GTAC 3 cut(s) 121, 424, 651
DdeI CTNAG 2 cut(s) 84, 416
DpnI GATC 4 cut(s) 443, 681, 738, 825
DpnII GATC 4 cut(s) 441, 679, 736, 823
DraI TTTAAA 1 cut(s) 522
Eam1104I CTCTTC 2 cut(s) 399, 463
EarI CTCTTC 2 cut(s) 399, 463
Eco130I CCWWGG 3 cut(s) 9, 75, 162
Eco47I GGWCC 2 cut(s) 166, 752
Eco57I CTGAAG 2 cut(s) 237, 584
Eco72I CACGTG 1 cut(s) 242
EcoNI CCTNNNNNAGG 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 752
EcoRII CCWGG 3 cut(s) 316, 664, 754
EcoT14I CCWWGG 3 cut(s) 9, 75, 162
ErhI CCWWGG 3 cut(s) 9, 75, 162
FaeI CATG 2 cut(s) 166, 253
FaiI YATR 5 cut(s) 164, 251, 329, 446, 618
FalI AAGNNNNNCTT 1 cut(s) 34
FaqI GGGAC 1 cut(s) 765
FatI CATG 2 cut(s) 162, 249
FbaI TGATCA 1 cut(s) 441
Fnu4HI GCNGC 1 cut(s) 450
FokI GGATG 2 cut(s) 17, 27
Fsp4HI GCNGC 1 cut(s) 450
FspBI CTAG 2 cut(s) 267, 386
FspI TGCGCA 1 cut(s) 789
GlaI GCGC 4 cut(s) 89, 146, 746, 789
GluI GCNGC 1 cut(s) 450
HaeIII GGCC 1 cut(s) 802
HhaI GCGC 4 cut(s) 90, 147, 747, 790
Hin1II CATG 2 cut(s) 166, 253
Hin6I GCGC 4 cut(s) 88, 145, 745, 788
HinP1I GCGC 4 cut(s) 88, 145, 745, 788
HinfI GANTC 6 cut(s) 80, 236, 382, 586, 595, 698
HphI GGTGA 4 cut(s) 324, 332, 728, 774
Hpy166II GTNNAC 2 cut(s) 245, 500
Hpy188I TCNGA 5 cut(s) 474, 556, 603, 741, 769
Hpy188III TCNNGA 5 cut(s) 66, 188, 563, 644, 695
Hpy8I GTNNAC 2 cut(s) 245, 500
HpyAV CCTTC 3 cut(s) 366, 670, 786
HpyCH4III ACNGT 4 cut(s) 120, 159, 349, 650
HpyCH4IV ACGT 2 cut(s) 241, 422
HpyCH4V TGCA 6 cut(s) 203, 245, 257, 353, 452, 613
HpyF10VI GCNNNNNNNGC 4 cut(s) 108, 263, 396, 490
HpyF3I CTNAG 2 cut(s) 84, 416
HpySE526I ACGT 2 cut(s) 241, 422
Hsp92II CATG 2 cut(s) 166, 253
HspAI GCGC 4 cut(s) 88, 145, 745, 788
Ksp22I TGATCA 1 cut(s) 441
Kzo9I GATC 4 cut(s) 441, 679, 736, 823
LguI GCTCTTC 1 cut(s) 463
LmnI GCTCC 2 cut(s) 556, 778
Lsp1109I GCAGC 1 cut(s) 436
LweI GCATC 3 cut(s) 49, 190, 568
MabI ACCWGGT 1 cut(s) 754
MaeI CTAG 2 cut(s) 267, 386
MaeII ACGT 2 cut(s) 241, 422
MaeIII GTNAC 4 cut(s) 127, 237, 286, 644
MalI GATC 4 cut(s) 443, 681, 738, 825
MboI GATC 4 cut(s) 441, 679, 736, 823
MboII GAAGA 4 cut(s) 70, 386, 450, 590
MflI RGATCY 1 cut(s) 823
MhlI GDGCHC 2 cut(s) 157, 247
MluCI AATT 2 cut(s) 517, 566
MlyI GAGTC 5 cut(s) 89, 245, 376, 580, 692
MmeI TCCRAC 2 cut(s) 255, 560
MnlI CCTC 5 cut(s) 106, 199, 297, 616, 707
MseI TTAA 5 cut(s) 516, 521, 569, 729, 812
MspR9I CCNGG 3 cut(s) 318, 666, 756
MvaI CCWGG 3 cut(s) 318, 666, 756
MvnI CGCG 2 cut(s) 67, 111
MwoI GCNNNNNNNGC 4 cut(s) 108, 263, 396, 490
NcoI CCATGG 1 cut(s) 162
NdeII GATC 4 cut(s) 441, 679, 736, 823
NlaIII CATG 2 cut(s) 166, 253
NlaIV GGNNCC 2 cut(s) 117, 753
NmeAIII GCCGAG 1 cut(s) 259
NmuCI GTSAC 3 cut(s) 237, 286, 644
NruI TCGCGA 1 cut(s) 67
NsbI TGCGCA 1 cut(s) 789
PaqCI CACCTGC 1 cut(s) 793
PciSI GCTCTTC 1 cut(s) 463
PcsI WCGNNNNNNNCGW 1 cut(s) 403
PfeI GAWTC 1 cut(s) 595
Pfl23II CGTACG 1 cut(s) 423
PkrI GCNGC 1 cut(s) 451
PleI GAGTC 5 cut(s) 88, 244, 376, 580, 692
PmaCI CACGTG 1 cut(s) 242
PmlI CACGTG 1 cut(s) 242
PpsI GAGTC 5 cut(s) 88, 244, 376, 580, 692
Ppu21I YACGTR 1 cut(s) 242
PpuMI RGGWCCY 1 cut(s) 752
Psp5II RGGWCCY 1 cut(s) 752
Psp6I CCWGG 3 cut(s) 316, 664, 754
PspCI CACGTG 1 cut(s) 242
PspGI CCWGG 3 cut(s) 316, 664, 754
PspLI CGTACG 1 cut(s) 423
PspN4I GGNNCC 2 cut(s) 117, 753
PspPI GGNCC 2 cut(s) 166, 752
PspPPI RGGWCCY 1 cut(s) 752
PsuI RGATCY 1 cut(s) 823
RruI TCGCGA 1 cut(s) 67
RsaI GTAC 3 cut(s) 122, 425, 652
RsaNI GTAC 3 cut(s) 121, 424, 651
SapI GCTCTTC 1 cut(s) 463
SaqAI TTAA 5 cut(s) 516, 521, 569, 729, 812
SatI GCNGC 1 cut(s) 450
Sau3AI GATC 4 cut(s) 441, 679, 736, 823
Sau96I GGNCC 2 cut(s) 166, 752
ScaI AGTACT 1 cut(s) 652
SchI GAGTC 5 cut(s) 89, 245, 376, 580, 692
ScrFI CCNGG 3 cut(s) 318, 666, 756
SduI GDGCHC 2 cut(s) 157, 247
SexAI ACCWGGT 1 cut(s) 754
SfaNI GCATC 3 cut(s) 49, 190, 568
SinI GGWCC 2 cut(s) 166, 752
Sse9I AATT 2 cut(s) 517, 566
SspMI CTAG 2 cut(s) 267, 386
StyD4I CCNGG 3 cut(s) 316, 664, 754
StyI CCWWGG 3 cut(s) 9, 75, 162
TaaI ACNGT 4 cut(s) 120, 159, 349, 650
TaiI ACGT 2 cut(s) 244, 425
TaqI TCGA 4 cut(s) 365, 380, 406, 489
TasI AATT 2 cut(s) 517, 566
TatI WGTACW 1 cut(s) 650
TfiI GAWTC 1 cut(s) 595
Tru1I TTAA 5 cut(s) 516, 521, 569, 729, 812
Tru9I TTAA 5 cut(s) 516, 521, 569, 729, 812
TscAI CASTG 2 cut(s) 162, 352
TseFI GTSAC 3 cut(s) 237, 286, 644
TseI GCWGC 1 cut(s) 449
Tsp45I GTSAC 3 cut(s) 237, 286, 644
TspDTI ATGAA 2 cut(s) 624, 768
TspRI CASTG 2 cut(s) 162, 352
VneI GTGCAC 1 cut(s) 243
VpaK11BI GGWCC 2 cut(s) 166, 752
XagI CCTNNNNNAGG 1 cut(s) 50
XcmI CCANNNNNNNNNTGG 1 cut(s) 16
XspI CTAG 2 cut(s) 267, 386
ZrmI AGTACT 1 cut(s) 652
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.